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September 30, 2024 20:58
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(partial) EasyBuild log for failed build of /tmp/vsc40023/easybuild-easyconfigs/easybuild/easyconfigs/o/OpenBabel/OpenBabel-3.1.1-gompi-2023a.eb (easyblock PR(s) #3343)
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| *** Open Babel Warning in IsValid | |
| The molecule contains a connected component that contains atoms with different reaction roles. All atoms in a particular connected component should have the same role. | |
| ...........============================== | |
| *** Open Babel Warning in ReadMolecule | |
| WARNING: Problem interpreting the valence field of an atom | |
| The valence field specifies a valence 0 that is | |
| less than the observed explicit valence 1. | |
| .============================== | |
| *** Open Babel Warning in WriteMolecule | |
| No 2D or 3D coordinates exist. Stereochemical information will be stored using an Open Babel extension. To generate 2D or 3D coordinates instead use --gen2D or --gen3D. | |
| ..........============================== | |
| *** Open Babel Error in ParseComplex | |
| SMILES string contains a character '#' which is invalid | |
| ============================== | |
| *** Open Babel Error in ParseComplex | |
| Element number must be <= 255) | |
| ============================== | |
| *** Open Babel Error in ParseComplex | |
| SMILES string contains a character '#' which is invalid | |
| ..============================== | |
| *** Open Babel Warning in ParseRingBond | |
| Warning: Tetrahedral stereo specified for atom with more than 4 connections. | |
| ============================== | |
| *** Open Babel Warning in ParseSmiles | |
| Failed to kekulize aromatic SMILES | |
| ....============================== | |
| *** Open Babel Error in ParseSimple | |
| SMILES string contains a character ',' which is invalid | |
| ============================== | |
| *** Open Babel Error in ParseSimple | |
| SMILES string contains a character ',' which is invalid | |
| ============================== | |
| *** Open Babel Error in ParseComplex | |
| SMILES string contains a character ',' which is invalid | |
| ============================== | |
| *** Open Babel Error in ParseComplex | |
| SMILES string contains a character ',' which is invalid | |
| ============================== | |
| *** Open Babel Warning in ParseComplex | |
| The atom class following : must be a number | |
| ============================== | |
| *** Open Babel Error in ParseSimple | |
| SMILES string contains a character ',' which is invalid | |
| ============================== | |
| *** Open Babel Warning in ParseRingBond | |
| Two digits expected after % | |
| ============================== | |
| *** Open Babel Warning in ParseRingBond | |
| Matching close parenthesis not found for ring closure number | |
| ============================== | |
| *** Open Babel Error in ParseSimple | |
| SMILES string contains a character ',' which is invalid | |
| ..........============================== | |
| *** Open Babel Warning in ParseComplex | |
| Charge can only be specified once | |
| ============================== | |
| *** Open Babel Warning in ParseComplex | |
| Charge can only be specified once | |
| ============================== | |
| *** Open Babel Warning in ParseComplex | |
| Charge can only be specified once | |
| ============================== | |
| *** Open Babel Warning in ParseComplex | |
| Charge can only be specified once | |
| ...============================== | |
| *** Open Babel Warning in ReadMolecule | |
| Ignoring mass difference field for explicit hydrogen isotope. | |
| 0.0000 0.0000 0.0000 D 1 0 0 0 0 0 0 0 0 0 0 0 | |
| ============================== | |
| *** Open Babel Warning in ReadMolecule | |
| Ignoring mass difference field for explicit hydrogen isotope. | |
| 0.0000 0.0000 0.0000 T 1 0 0 0 0 0 0 0 0 0 0 0 | |
| ============================== | |
| *** Open Babel Warning in ReadMolecule | |
| Invalid value for mass difference. It should be between -3 and 4. | |
| 0.0000 0.0000 0.0000 C 5 0 0 0 0 0 0 0 0 0 0 0 | |
| ============================== | |
| *** Open Babel Warning in ReadMolecule | |
| Invalid value for mass difference. It should be between -3 and 4. | |
| 0.0000 0.0000 0.0000 C -4 0 0 0 0 0 0 0 0 0 0 0 | |
| ..============================== | |
| *** Open Babel Warning in WriteMolecule | |
| No 2D or 3D coordinates exist. Stereochemical information will be stored using an Open Babel extension. To generate 2D or 3D coordinates instead use --gen2D or --gen3D. | |
| ...============================== | |
| *** Open Babel Warning in GetSmilesElement | |
| Isotope value larger than 9999. Ignoring value. | |
| ..============================== | |
| *** Open Babel Warning in ParseComplex | |
| Square planar stereochemistry must be one of SP1, SP2 or SP3 | |
| ============================== | |
| *** Open Babel Warning in ParseComplex | |
| Square planar stereochemistry must be one of SP1, SP2 or SP3 | |
| ============================== | |
| *** Open Babel Warning in InsertSquarePlanarRef | |
| Warning: Square planar stereo specified for atom with more than 4 connections. | |
| ============================== | |
| *** Open Babel Warning in InsertSquarePlanarRef | |
| Warning: Square planar stereo specified for atom with more than 4 connections. | |
| ..... | |
| ---------------------------------------------------------------------- | |
| Ran 62 tests in 0.247s | |
| OK | |
| double free or corruption (!prev) | |
| CMake Error at pybindtest_bindings.cmake:20 (MESSAGE): | |
| Subprocess aborted | |
| Start 224: pybindtest__pybel | |
| 224/229 Test #224: pybindtest__pybel ................***Failed 0.76 sec | |
| /tmp/vsc40023/easybuild_build/OpenBabel/3.1.1/gompi-2023a/openbabel-openbabel-3-1-1/scripts/python:/tmp/vsc40023/easybuild_build/OpenBabel/3.1.1/gompi-2023a/easybuild_obj/lib | |
| .........................============================== | |
| *** Open Babel Warning in WriteMolecule | |
| No 2D or 3D coordinates exist. Stereochemical information will be stored using an Open Babel extension. To generate 2D or 3D coordinates instead use --gen2D or --gen3D. | |
| .....============================== | |
| *** Open Babel Error in SMARTSError | |
| SMARTS Error: | |
| [#NOEL][#NOEL] | |
| ^ | |
| .... | |
| ---------------------------------------------------------------------- | |
| Ran 34 tests in 0.437s | |
| OK | |
| double free or corruption (!prev) | |
| CMake Error at pybindtest__pybel.cmake:20 (MESSAGE): | |
| Subprocess aborted | |
| Start 225: pybindtest_example | |
| 225/229 Test #225: pybindtest_example ...............***Failed 0.32 sec | |
| /tmp/vsc40023/easybuild_build/OpenBabel/3.1.1/gompi-2023a/openbabel-openbabel-3-1-1/scripts/python:/tmp/vsc40023/easybuild_build/OpenBabel/3.1.1/gompi-2023a/easybuild_obj/lib | |
| .. | |
| ---------------------------------------------------------------------- | |
| Ran 2 tests in 0.001s | |
| OK | |
| free(): double free detected in tcache 2 | |
| CMake Error at pybindtest_example.cmake:20 (MESSAGE): | |
| Subprocess aborted | |
| Start 226: pybindtest_obconv_writers | |
| 226/229 Test #226: pybindtest_obconv_writers ........***Failed 0.39 sec | |
| /tmp/vsc40023/easybuild_build/OpenBabel/3.1.1/gompi-2023a/openbabel-openbabel-3-1-1/scripts/python:/tmp/vsc40023/easybuild_build/OpenBabel/3.1.1/gompi-2023a/easybuild_obj/lib | |
| ........................................................................................................................................... | |
| ---------------------------------------------------------------------- | |
| Ran 139 tests in 0.056s | |
| OK | |
| double free or corruption (!prev) | |
| CMake Error at pybindtest_obconv_writers.cmake:20 (MESSAGE): | |
| Subprocess aborted | |
| Start 227: pybindtest_cdjsonformat | |
| 227/229 Test #227: pybindtest_cdjsonformat ..........***Failed 0.34 sec | |
| /tmp/vsc40023/easybuild_build/OpenBabel/3.1.1/gompi-2023a/openbabel-openbabel-3-1-1/scripts/python:/tmp/vsc40023/easybuild_build/OpenBabel/3.1.1/gompi-2023a/easybuild_obj/lib | |
| .......... | |
| ---------------------------------------------------------------------- | |
| Ran 10 tests in 0.002s | |
| OK | |
| free(): double free detected in tcache 2 | |
| CMake Error at pybindtest_cdjsonformat.cmake:20 (MESSAGE): | |
| Subprocess aborted | |
| Start 228: pybindtest_pcjsonformat | |
| 228/229 Test #228: pybindtest_pcjsonformat ..........***Failed 0.31 sec | |
| /tmp/vsc40023/easybuild_build/OpenBabel/3.1.1/gompi-2023a/openbabel-openbabel-3-1-1/scripts/python:/tmp/vsc40023/easybuild_build/OpenBabel/3.1.1/gompi-2023a/easybuild_obj/lib | |
| ................. | |
| ---------------------------------------------------------------------- | |
| Ran 17 tests in 0.008s | |
| OK | |
| double free or corruption (!prev) | |
| CMake Error at pybindtest_pcjsonformat.cmake:20 (MESSAGE): | |
| Subprocess aborted | |
| Start 229: pybindtest_roundtrip | |
| 229/229 Test #229: pybindtest_roundtrip .............***Failed 167.05 sec | |
| /tmp/vsc40023/easybuild_build/OpenBabel/3.1.1/gompi-2023a/openbabel-openbabel-3-1-1/scripts/python:/tmp/vsc40023/easybuild_build/OpenBabel/3.1.1/gompi-2023a/easybuild_obj/lib | |
| ============================== | |
| *** Open Babel Error in TetStereoToWedgeHash | |
| Failed to set stereochemistry as unable to find an available bond | |
| ============================== | |
| *** Open Babel Error in TetStereoToWedgeHash | |
| Failed to set stereochemistry as unable to find an available bond | |
| ============================== | |
| *** Open Babel Error in TetStereoToWedgeHash | |
| Failed to set stereochemistry as unable to find an available bond | |
| ============================== | |
| *** Open Babel Error in TetStereoToWedgeHash | |
| Failed to set stereochemistry as unable to find an available bond | |
| ============================== | |
| *** Open Babel Error in TetStereoToWedgeHash | |
| Failed to set stereochemistry as unable to find an available bond | |
| ============================== | |
| *** Open Babel Error in TetStereoToWedgeHash | |
| Failed to set stereochemistry as unable to find an available bond | |
| ============================== | |
| *** Open Babel Error in TetStereoToWedgeHash | |
| Failed to set stereochemistry as unable to find an available bond | |
| ============================== | |
| *** Open Babel Error in TetStereoToWedgeHash | |
| Failed to set stereochemistry as unable to find an available bond | |
| ============================== | |
| *** Open Babel Error in TetStereoToWedgeHash | |
| Failed to set stereochemistry as unable to find an available bond | |
| ============================== | |
| *** Open Babel Error in TetStereoToWedgeHash | |
| Failed to set stereochemistry as unable to find an available bond | |
| ============================== | |
| *** Open Babel Error in TetStereoToWedgeHash | |
| Failed to set stereochemistry as unable to find an available bond | |
| ============================== | |
| *** Open Babel Error in TetStereoToWedgeHash | |
| Failed to set stereochemistry as unable to find an available bond | |
| ============================== | |
| *** Open Babel Error in TetStereoToWedgeHash | |
| Failed to set stereochemistry as unable to find an available bond | |
| ============================== | |
| *** Open Babel Error in TetStereoToWedgeHash | |
| Failed to set stereochemistry as unable to find an available bond | |
| ============================== | |
| *** Open Babel Error in TetStereoToWedgeHash | |
| Failed to set stereochemistry as unable to find an available bond | |
| ============================== | |
| *** Open Babel Error in TetStereoToWedgeHash | |
| Failed to set stereochemistry as unable to find an available bond | |
| ============================== | |
| *** Open Babel Error in TetStereoToWedgeHash | |
| Failed to set stereochemistry as unable to find an available bond | |
| ============================== | |
| *** Open Babel Error in TetStereoToWedgeHash | |
| Failed to set stereochemistry as unable to find an available bond | |
| ============================== | |
| *** Open Babel Error in TetStereoToWedgeHash | |
| Failed to set stereochemistry as unable to find an available bond | |
| ============================== | |
| *** Open Babel Error in TetStereoToWedgeHash | |
| Failed to set stereochemistry as unable to find an available bond | |
| ============================== | |
| *** Open Babel Error in TetStereoToWedgeHash | |
| Failed to set stereochemistry as unable to find an available bond | |
| ============================== | |
| *** Open Babel Error in TetStereoToWedgeHash | |
| Failed to set stereochemistry as unable to find an available bond | |
| ============================== | |
| *** Open Babel Error in TetStereoToWedgeHash | |
| Failed to set stereochemistry as unable to find an available bond | |
| ============================== | |
| *** Open Babel Error in TetStereoToWedgeHash | |
| Failed to set stereochemistry as unable to find an available bond | |
| ============================== | |
| *** Open Babel Error in TetStereoToWedgeHash | |
| Failed to set stereochemistry as unable to find an available bond | |
| ============================== | |
| *** Open Babel Error in TetStereoToWedgeHash | |
| Failed to set stereochemistry as unable to find an available bond | |
| ============================== | |
| *** Open Babel Error in TetStereoToWedgeHash | |
| Failed to set stereochemistry as unable to find an available bond | |
| ============================== | |
| *** Open Babel Error in TetStereoToWedgeHash | |
| Failed to set stereochemistry as unable to find an available bond | |
| ============================== | |
| *** Open Babel Error in TetStereoToWedgeHash | |
| Failed to set stereochemistry as unable to find an available bond | |
| ============================== | |
| *** Open Babel Error in TetStereoToWedgeHash | |
| Failed to set stereochemistry as unable to find an available bond | |
| ============================== | |
| *** Open Babel Error in TetStereoToWedgeHash | |
| Failed to set stereochemistry as unable to find an available bond | |
| ============================== | |
| *** Open Babel Error in TetStereoToWedgeHash | |
| Failed to set stereochemistry as unable to find an available bond | |
| /user/gent/400/vsc40023/eb_arcaninescratch/RHEL8-eb5dev-rpath/zen2-ib/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/multiprocessing/pool.py:268: ResourceWarning: unclosed running multiprocessing pool <multiprocessing.pool.Pool state=RUN pool_size=1> | |
| _warn(f"unclosed running multiprocessing pool {self!r}", | |
| ResourceWarning: Enable tracemalloc to get the object allocation traceback | |
| . | |
| ---------------------------------------------------------------------- | |
| Ran 1 test in 166.704s | |
| OK | |
| double free or corruption (!prev) | |
| CMake Error at pybindtest_roundtrip.cmake:20 (MESSAGE): | |
| Subprocess aborted | |
| 25% tests passed, 172 tests failed out of 229 | |
| Total Test time (real) = 329.42 sec | |
| The following tests FAILED: | |
| 4 - test_align_4 (Subprocess aborted) | |
| 5 - test_align_5 (Subprocess aborted) | |
| 6 - test_alias_1 (Subprocess aborted) | |
| 7 - test_automorphism_1 (Subprocess aborted) | |
| 8 - test_automorphism_2 (Subprocess aborted) | |
| 9 - test_automorphism_3 (Subprocess aborted) | |
| 10 - test_automorphism_4 (Subprocess aborted) | |
| 11 - test_automorphism_5 (Subprocess aborted) | |
| 12 - test_automorphism_6 (Subprocess aborted) | |
| 13 - test_automorphism_7 (Subprocess aborted) | |
| 14 - test_automorphism_8 (Subprocess aborted) | |
| 15 - test_automorphism_9 (Subprocess aborted) | |
| 16 - test_automorphism_10 (Subprocess aborted) | |
| 17 - test_builder_1 (Subprocess aborted) | |
| 18 - test_builder_2 (Subprocess aborted) | |
| 19 - test_builder_3 (Subprocess aborted) | |
| 20 - test_builder_4 (Subprocess aborted) | |
| 21 - test_builder_5 (Subprocess aborted) | |
| 22 - test_builder_6 (Subprocess aborted) | |
| 23 - test_canonconsistent_1 (Subprocess aborted) | |
| 24 - test_canonconsistent_2 (Subprocess aborted) | |
| 25 - test_canonconsistent_3 (Subprocess aborted) | |
| 26 - test_canonfragment_1 (Subprocess aborted) | |
| 27 - test_canonstable_1 (Subprocess aborted) | |
| 28 - test_carspacegroup_1 (Subprocess aborted) | |
| 29 - test_carspacegroup_2 (Subprocess aborted) | |
| 30 - test_carspacegroup_3 (Subprocess aborted) | |
| 31 - test_carspacegroup_4 (Subprocess aborted) | |
| 32 - test_cifspacegroup_1 (Subprocess aborted) | |
| 33 - test_cifspacegroup_2 (Subprocess aborted) | |
| 35 - test_cifspacegroup_4 (Subprocess aborted) | |
| 36 - test_cifspacegroup_5 (Subprocess aborted) | |
| 37 - test_cifspacegroup_6 (Subprocess aborted) | |
| 38 - test_cifspacegroup_7 (Subprocess aborted) | |
| 39 - test_cifspacegroup_8 (Subprocess aborted) | |
| 40 - test_cifspacegroup_9 (Subprocess aborted) | |
| 41 - test_cifspacegroup_10 (Subprocess aborted) | |
| 42 - test_cifspacegroup_11 (Subprocess aborted) | |
| 43 - test_cifspacegroup_12 (Subprocess aborted) | |
| 44 - test_cifspacegroup_13 (Subprocess aborted) | |
| 50 - test_cistrans_6 (Subprocess aborted) | |
| 51 - test_cistrans_7 (Subprocess aborted) | |
| 52 - test_cistrans_8 (Subprocess aborted) | |
| 53 - test_cistrans_9 (Subprocess aborted) | |
| 54 - test_conversion_1 (Subprocess aborted) | |
| 55 - test_graphsym_1 (Subprocess aborted) | |
| 56 - test_graphsym_2 (Subprocess aborted) | |
| 57 - test_graphsym_3 (Subprocess aborted) | |
| 58 - test_graphsym_4 (Subprocess aborted) | |
| 59 - test_graphsym_5 (Subprocess aborted) | |
| 60 - test_gzip_1 (Subprocess aborted) | |
| 61 - test_addh_1 (Subprocess aborted) | |
| 62 - test_implicitH_1 (Subprocess aborted) | |
| 63 - test_lssr_1 (Subprocess aborted) | |
| 64 - test_lssr_2 (Subprocess aborted) | |
| 65 - test_lssr_3 (Subprocess aborted) | |
| 66 - test_lssr_4 (Subprocess aborted) | |
| 67 - test_lssr_5 (Subprocess aborted) | |
| 68 - test_isomorphism_1 (Subprocess aborted) | |
| 69 - test_isomorphism_2 (Subprocess aborted) | |
| 70 - test_isomorphism_3 (Subprocess aborted) | |
| 71 - test_isomorphism_4 (Subprocess aborted) | |
| 72 - test_isomorphism_5 (Subprocess aborted) | |
| 73 - test_isomorphism_6 (Subprocess aborted) | |
| 74 - test_isomorphism_7 (Subprocess aborted) | |
| 75 - test_isomorphism_8 (Subprocess aborted) | |
| 76 - test_isomorphism_9 (Subprocess aborted) | |
| 77 - test_multicml_1 (Subprocess aborted) | |
| 80 - test_periodic_3 (Subprocess aborted) | |
| 82 - test_regressions_1 (Subprocess aborted) | |
| 83 - test_regressions_221 (Subprocess aborted) | |
| 84 - test_regressions_222 (Subprocess aborted) | |
| 85 - test_regressions_223 (Subprocess aborted) | |
| 86 - test_regressions_224 (Subprocess aborted) | |
| 87 - test_regressions_225 (Subprocess aborted) | |
| 88 - test_regressions_226 (Subprocess aborted) | |
| 89 - test_regressions_227 (Subprocess aborted) | |
| 90 - test_regressions_228 (Subprocess aborted) | |
| 91 - test_regressions_240 (Subprocess aborted) | |
| 92 - test_regressions_241 (Subprocess aborted) | |
| 93 - test_regressions_242 (Subprocess aborted) | |
| 94 - test_regressions_1794 (Subprocess aborted) | |
| 95 - test_regressions_2111 (Subprocess aborted) | |
| 97 - test_rotor_2 (Subprocess aborted) | |
| 98 - test_rotor_3 (Subprocess aborted) | |
| 99 - test_rotor_4 (Subprocess aborted) | |
| 100 - test_shuffle_1 (Subprocess aborted) | |
| 101 - test_shuffle_2 (Subprocess aborted) | |
| 102 - test_shuffle_3 (Subprocess aborted) | |
| 103 - test_shuffle_4 (Subprocess aborted) | |
| 104 - test_shuffle_5 (Subprocess aborted) | |
| 105 - test_smiles_1 (Subprocess aborted) | |
| 106 - test_smiles_2 (Subprocess aborted) | |
| 107 - test_smiles_3 (Subprocess aborted) | |
| 123 - test_stereo_6 (Subprocess aborted) | |
| 124 - test_stereoperception_1 (Subprocess aborted) | |
| 125 - test_stereoperception_2 (Subprocess aborted) | |
| 126 - test_stereoperception_3 (Subprocess aborted) | |
| 127 - test_stereoperception_4 (Subprocess aborted) | |
| 128 - test_tautomer_1 (Subprocess aborted) | |
| 129 - test_tautomer_2 (Subprocess aborted) | |
| 130 - test_tautomer_3 (Subprocess aborted) | |
| 131 - test_tautomer_4 (Subprocess aborted) | |
| 132 - test_tautomer_5 (Subprocess aborted) | |
| 133 - test_tautomer_6 (Subprocess aborted) | |
| 134 - test_tautomer_7 (Subprocess aborted) | |
| 135 - test_tautomer_8 (Subprocess aborted) | |
| 136 - test_tautomer_9 (Subprocess aborted) | |
| 137 - test_tautomer_10 (Subprocess aborted) | |
| 138 - test_tautomer_11 (Subprocess aborted) | |
| 139 - test_tautomer_12 (Subprocess aborted) | |
| 140 - test_tautomer_13 (Subprocess aborted) | |
| 141 - test_tautomer_14 (Subprocess aborted) | |
| 142 - test_tautomer_15 (Subprocess aborted) | |
| 143 - test_tautomer_16 (Subprocess aborted) | |
| 144 - test_tautomer_17 (Subprocess aborted) | |
| 145 - test_tautomer_18 (Subprocess aborted) | |
| 146 - test_tautomer_19 (Subprocess aborted) | |
| 147 - test_tautomer_20 (Subprocess aborted) | |
| 148 - test_tautomer_21 (Subprocess aborted) | |
| 149 - test_tautomer_22 (Subprocess aborted) | |
| 150 - test_tautomer_23 (Subprocess aborted) | |
| 151 - test_tautomer_24 (Subprocess aborted) | |
| 152 - test_tautomer_25 (Subprocess aborted) | |
| 153 - test_tautomer_26 (Subprocess aborted) | |
| 154 - test_tautomer_27 (Subprocess aborted) | |
| 155 - test_tautomer_28 (Subprocess aborted) | |
| 165 - test_maereader_1 (Subprocess aborted) | |
| 166 - test_maereader_2 (Subprocess aborted) | |
| 167 - test_aromatest_1 (Subprocess aborted) | |
| 173 - test_cansmi_1 (Subprocess aborted) | |
| 174 - test_charge_mmff94_1 (Subprocess aborted) | |
| 175 - test_charge_gasteiger_1 (Subprocess aborted) | |
| 177 - test_ffgaff_1 (Subprocess aborted) | |
| 178 - test_ffghemical_1 (Subprocess aborted) | |
| 179 - test_ffmmff94_1 (Subprocess aborted) | |
| 180 - test_ffmmff94_2 (Subprocess aborted) | |
| 181 - test_ffmmff94_3 (Subprocess aborted) | |
| 182 - test_ffmmff94_4 (Subprocess aborted) | |
| 183 - test_ffmmff94_5 (Subprocess aborted) | |
| 185 - test_ffuff_1 (Subprocess aborted) | |
| 186 - test_formalcharge_1 (Subprocess aborted) | |
| 187 - test_format_1 (Subprocess aborted) | |
| 188 - test_formula_1 (Subprocess aborted) | |
| 192 - test_iterators_1 (Subprocess aborted) | |
| 193 - test_logp_psa_1 (Subprocess aborted) | |
| 198 - test_mol_1 (Subprocess aborted) | |
| 199 - test_pdbreadfile_1 (Subprocess aborted) | |
| 200 - test_pdbreadfile_2 (Subprocess aborted) | |
| 201 - test_pdbreadfile_3 (Subprocess aborted) | |
| 202 - test_pdbreadfile_4 (Subprocess aborted) | |
| 203 - test_phmodel_1 (Subprocess aborted) | |
| 204 - test_residue_1 (Subprocess aborted) | |
| 205 - test_ringtest_1 (Subprocess aborted) | |
| 206 - test_smartstest_1 (Subprocess aborted) | |
| 208 - test_smilesmatch_1 (Subprocess aborted) | |
| 210 - test_cmlreadfile_1 (Subprocess aborted) | |
| 211 - inchiSamples.sdf_Test (Subprocess aborted) | |
| 212 - inchiSamplesTechMan.sdf_Test (Subprocess aborted) | |
| 213 - inchiSteffen_PubChem.smi_Test (Subprocess aborted) | |
| 214 - pytest_babel (Failed) | |
| 215 - pytest_sym (Failed) | |
| 216 - pytest_smartssym (Failed) | |
| 220 - pytest_kekule (Failed) | |
| 222 - pytest_RInChI (Failed) | |
| 223 - pybindtest_bindings (Failed) | |
| 224 - pybindtest__pybel (Failed) | |
| 225 - pybindtest_example (Failed) | |
| 226 - pybindtest_obconv_writers (Failed) | |
| 227 - pybindtest_cdjsonformat (Failed) | |
| 228 - pybindtest_pcjsonformat (Failed) | |
| 229 - pybindtest_roundtrip (Failed) | |
| Errors while running CTest | |
| make: *** [Makefile:74: test] Error 8 | |
| == 2024-09-30 22:10:33,052 run.py:581 WARNING Shell command FAILED (exit code 2, see output above): cp lib/_openbabel.so /tmp/vsc40023/easybuild_build/OpenBabel/3.1.1/gompi-2023a/openbabel-*/scripts/python/openbabel/ && make test | |
| == 2024-09-30 22:10:33,176 build_log.py:226 ERROR EasyBuild encountered an error (at easybuild/base/exceptions.py:126 in __init__): shell command 'cp ...' failed in test step for OpenBabel-3.1.1-gompi-2023a.eb (at easybuild/framework/easyblock.py:2355 in report_test_failure) | |
| == 2024-09-30 22:10:33,176 build_log.py:322 INFO ... (took 5 mins 29 secs) | |
| == 2024-09-30 22:10:33,179 config.py:716 DEBUG software install path as specified by 'installpath' and 'subdir_software': /user/gent/400/vsc40023/eb_arcaninescratch/RHEL8-eb5dev-rpath/zen2-ib/software | |
| == 2024-09-30 22:10:33,179 filetools.py:2045 INFO Removing lock /user/gent/400/vsc40023/eb_arcaninescratch/RHEL8-eb5dev-rpath/zen2-ib/software/.locks/_user_gent_400_vsc40023_eb_arcaninescratch_RHEL8-eb5dev-rpath_zen2-ib_software_OpenBabel_3.1.1-gompi-2023a.lock... | |
| == 2024-09-30 22:10:33,180 filetools.py:400 INFO Path /user/gent/400/vsc40023/eb_arcaninescratch/RHEL8-eb5dev-rpath/zen2-ib/software/.locks/_user_gent_400_vsc40023_eb_arcaninescratch_RHEL8-eb5dev-rpath_zen2-ib_software_OpenBabel_3.1.1-gompi-2023a.lock successfully removed. | |
| == 2024-09-30 22:10:33,180 filetools.py:2049 INFO Lock removed: /user/gent/400/vsc40023/eb_arcaninescratch/RHEL8-eb5dev-rpath/zen2-ib/software/.locks/_user_gent_400_vsc40023_eb_arcaninescratch_RHEL8-eb5dev-rpath_zen2-ib_software_OpenBabel_3.1.1-gompi-2023a.lock | |
| == 2024-09-30 22:10:33,180 easyblock.py:327 INFO Closing log for application name OpenBabel version 3.1.1 |
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