Created
September 8, 2021 23:22
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Logfiles for GitLab pipeline https://bbpgitlab.epfl.ch/hpc/coreneuron/-/pipelines/16159 (:white_check_mark:) running on GitHub PR BlueBrain/CoreNeuron#634.
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| [0KRunning with gitlab-runner 13.12.0 (7a6612da) | |
| [0;m[0K on BB5 map runner pnPo3yJy | |
| [0;msection_start:1631138850:resolve_secrets [0K[0K[36;1mResolving secrets[0;m | |
| [0;msection_end:1631138850:resolve_secrets [0Ksection_start:1631138850:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m | |
| [0;m[0KUsing Custom executor with driver BB5 PROD runner v0.0.3... | |
| [0;mBB5 PROD runner running on bbpv1.epfl.ch, version 13.12.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor896877603, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 16159, build ref fca92bfe02a7964cdd27baaaf5dee2c6abcbcbba, job ID 56370 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P16159 | |
| A slurm job will be created with name GL_J56370_PROD_P112_CP3_C3 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job eligible for phase1 and phase2, setting partition=prod_p2,prod_p1 | |
| Submitted batch job 2541235 | |
| job state: PD | |
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| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| section_end:1631139036:prepare_executor [0Ksection_start:1631139036:prepare_script [0K[0K[36;1mPreparing environment[0;m | |
| [0;mRunning on r4i3n0 via bbpv1.epfl.ch... | |
| section_end:1631139040:prepare_script [0Ksection_start:1631139040:get_sources [0K[0K[36;1mGetting source from Git repository[0;m | |
| [0;m[32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1631139044:get_sources [0Ksection_start:1631139044:restore_cache [0K[0K[36;1mRestoring cache[0;m | |
| [0;m[32;1mChecking cache for coreneuron-nvhpc-4...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=88523 revision[0;m=7a6612da version[0;m=13.12.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1631139054:restore_cache [0Ksection_start:1631139054:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m | |
| [0;m[32;1mDownloading artifacts for spack_setup (56364)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=88871 revision[0;m=7a6612da version[0;m=13.12.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=56364 responseStatus[0;m=200 OK token[0;m=utnzg6fm | |
| section_end:1631139055:download_artifacts [0Ksection_start:1631139055:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m | |
| [0;m[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426 | |
| [0;m[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_CONFIG}[0;m | |
| [32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56370/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56370/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56370/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:69 - $tempdir/$user/spack-stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 - ~/.spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 # - $spack/var/spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 # Directory in which to run tests and store test results. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 # Tests will be stored in directories named by date/time and package | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56370/spack-config/config.yaml:4 # name/hash. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/config.yaml:2 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56370/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/config.yaml:3 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:20 all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/config.yaml:5 root: $spack/opt/spack | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:33 build_jobs: 36 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:33 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:34 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:38 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:39 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:40 # Locations where different types of modules should be installed. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:76 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:85 tcl: $spack/share/spack/modules | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:91 lmod: $spack/share/spack/lmod | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:96 test_stage: ~/.spack/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:104 misc_cache: ~/.spack/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:110 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:115 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:120 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:128 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:137 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:149 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:163 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:170 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:178 ccache: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:184 concretizer: original | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:189 db_lock_timeout: 300 | |
| _builtin package_lock_timeout: !!null 'None' | |
| [32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = [email protected]:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = [email protected]: | |
| [32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m | |
| [32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m | |
| [32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m | |
| [32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m | |
| [32;1m$ echo New ref for ${SPACK_PACKAGE} is ${PACKAGE_REF}[0;m | |
| New ref for coreneuron is commit="fca92bfe02a7964cdd27baaaf5dee2c6abcbcbba" | |
| [32;1m$ sed -i -e "/^\s*version\s*(\s*\(['\"]\)develop\1/ { s/,\s*\(commit\|tag\|branch\)=\([\"']\)[^\"']\+\2//g; s#)#, ${PACKAGE_REF})#; }" "${SPACK_PACKAGE_FILE}"[0;m | |
| [32;1m$ (cd $(dirname "${SPACK_PACKAGE_FILE}") && git diff "${SPACK_PACKAGE_FILE}")[0;m | |
| diff --git a/var/spack/repos/builtin/packages/coreneuron/package.py b/var/spack/repos/builtin/packages/coreneuron/package.py | |
| index b5718ae..b269d09 100644 | |
| --- a/var/spack/repos/builtin/packages/coreneuron/package.py | |
| +++ b/var/spack/repos/builtin/packages/coreneuron/package.py | |
| @@ -18,7 +18,7 @@ class Coreneuron(CMakePackage): | |
| url = "https://github.com/BlueBrain/CoreNeuron" | |
| git = "https://github.com/BlueBrain/CoreNeuron" | |
| - version('develop', branch='master') | |
| + version('develop', commit="fca92bfe02a7964cdd27baaaf5dee2c6abcbcbba") | |
| # 1.0.1 > 1.0.0.20210519 > 1.0 as far as Spack is concerned | |
| version('1.0.0.20210708', commit='d54a3aa') | |
| version('1.0.0.20210610', commit='b4a25b4') | |
| [32;1m$ fi[0;m | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron@develop%nvhpc+gpu+tests~legacy-unit~report build_type=RelWithDebInfo | |
| [32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be ekzdtgq26p6y5mzmpphbjqbifw32enfk | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable git gcc[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'ekzdtgq26p6y5mzmpphbjqbifw32enfk' | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron@develop%nvhpc+gpu~legacy-unit~report+tests build_type=RelWithDebInfo | |
| Concretized | |
| -------------------------------- | |
| - ekzdtgq coreneuron@develop%[email protected]~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl~openmp~profile~report+shared~sympy~sympyopt+tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| - 2ifshpf ^[email protected]%[email protected] patches=ad81ef1b088459a396d908295afc3809f9a25076efaa459cdd2f21eabd1f4b16 arch=linux-rhel7-x86_64 | |
| [^] qu3qasv ^[email protected]%[email protected]+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556,d56f31f2a3956630e5372b987d39cb79b5d2c71760fa150b8eb4a3f1a07e2658 visibility=hidden arch=linux-rhel7-x86_64 | |
| - gluy7kg ^[email protected]%[email protected]~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64 | |
| [^] 4phgvnp ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - prwvb2t ^[email protected]%[email protected]+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64 | |
| [^] jop6mvp ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - mddtpd5 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] v5gxu5s ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_JOB_CPUS_PER_NODE} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m | |
| ==> [email protected] : has external module in ['bison/3.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-2ifshpf6x23hf7ccztxnrrqdx4mxt3rj) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k (external boost-1.73.0-qu3qasvmolllw4vbcf2maq2dz3hklz2r) | |
| ==> [email protected] : has external module in ['cmake/3.15.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-gluy7kgf2wgh5bfrenva7x4mtnzhr6r4) | |
| ==> [email protected] : has external module in ['cuda/11.0.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cuda-11.0.2-kb4wci (external cuda-11.0.2-4phgvnpeha2grh36f6f6w7ledwlpbcs3) | |
| ==> [email protected] : has external module in ['flex/2.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-prwvb2t3p3bo5eivmcrvx2eyffvcwfqy) | |
| ==> [email protected] : has external module in ['hpe-mpi/2.22.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.22.hmpt-r52ypu (external hpe-mpi-2.22.hmpt-jop6mvp4dll4wazl3uc7ycyupteb34ia) | |
| ==> [email protected] : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-mddtpd5kgds34dklkfm2prewsfy6becf) | |
| ==> [email protected] : has external module in ['python/3.8.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-v5gxu5slpix24wzbfiyzo52rwso5gsaa) | |
| ==> Installing coreneuron-develop-ekzdtgq26p6y5mzmpphbjqbifw32enfk | |
| ==> No binary for coreneuron-develop-ekzdtgq26p6y5mzmpphbjqbifw32enfk found: installing from source | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.2/coreneuron-develop-ekzdtg | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then ccache -s; fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}^/${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.8.3 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-numpy/1.19.4 | |
| Autoloading py-mpi4py/3.0.3 | |
| Autoloading hpe-mpi/2.22.hmpt | |
| Autoloading py-h5py/3.1.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m | |
| Returning the number of failed builds, 0 | |
| [32;1m$ exit ${num_failures}[0;m | |
| section_end:1631139404:step_script [0Ksection_start:1631139404:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m | |
| [0;m[32;1mCreating cache coreneuron-nvhpc-4...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=99617 revision[0;m=7a6612da version[0;m=13.12.0 | |
| ccache/: found 7941 matching files and directories[0;m | |
| Archive is up to date! [0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1631139407:archive_cache [0Ksection_start:1631139407:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m | |
| [0;m[32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=99664 revision[0;m=7a6612da version[0;m=13.12.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=56370 responseStatus[0;m=201 Created token[0;m=ujsQ7_ae | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=99686 revision[0;m=7a6612da version[0;m=13.12.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=56370 responseStatus[0;m=201 Created token[0;m=ujsQ7_ae | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=99710 revision[0;m=7a6612da version[0;m=13.12.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=56370 responseStatus[0;m=201 Created token[0;m=ujsQ7_ae | |
| section_end:1631139409:upload_artifacts_on_success [0Ksection_start:1631139409:cleanup_file_variables [0K[0K[36;1mCleaning up file based variables[0;m | |
| [0;msection_end:1631139409:cleanup_file_variables [0K[32;1mJob succeeded | |
| [0;m |
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| [0KRunning with gitlab-runner 13.12.0 (7a6612da) | |
| [0;m[0K on BB5 map runner pnPo3yJy | |
| [0;msection_start:1631138850:resolve_secrets [0K[0K[36;1mResolving secrets[0;m | |
| [0;msection_end:1631138850:resolve_secrets [0Ksection_start:1631138850:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m | |
| [0;m[0KUsing Custom executor with driver BB5 PROD runner v0.0.3... | |
| [0;mBB5 PROD runner running on bbpv1.epfl.ch, version 13.12.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor822289673, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 16159, build ref fca92bfe02a7964cdd27baaaf5dee2c6abcbcbba, job ID 56368 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P16159 | |
| A slurm job will be created with name GL_J56368_PROD_P112_CP2_C2 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job eligible for phase1 and phase2, setting partition=prod_p2,prod_p1 | |
| Submitted batch job 2541237 | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| section_end:1631139036:prepare_executor [0Ksection_start:1631139036:prepare_script [0K[0K[36;1mPreparing environment[0;m | |
| [0;mRunning on r4i3n0 via bbpv1.epfl.ch... | |
| section_end:1631139040:prepare_script [0Ksection_start:1631139040:get_sources [0K[0K[36;1mGetting source from Git repository[0;m | |
| [0;m[32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1631139044:get_sources [0Ksection_start:1631139044:restore_cache [0K[0K[36;1mRestoring cache[0;m | |
| [0;m[32;1mChecking cache for coreneuron-intel-4...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=88554 revision[0;m=7a6612da version[0;m=13.12.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1631139057:restore_cache [0Ksection_start:1631139057:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m | |
| [0;m[32;1mDownloading artifacts for spack_setup (56364)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=89394 revision[0;m=7a6612da version[0;m=13.12.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=56364 responseStatus[0;m=200 OK token[0;m=utnzg6fm | |
| section_end:1631139059:download_artifacts [0Ksection_start:1631139059:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m | |
| [0;m[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426 | |
| [0;m[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_CONFIG}[0;m | |
| [32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56368/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56368/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56368/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:69 - $tempdir/$user/spack-stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 - ~/.spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 # - $spack/var/spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 # Directory in which to run tests and store test results. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 # Tests will be stored in directories named by date/time and package | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56368/spack-config/config.yaml:4 # name/hash. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/config.yaml:2 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56368/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/config.yaml:3 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:20 all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/config.yaml:5 root: $spack/opt/spack | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:33 build_jobs: 36 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:33 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:34 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:38 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:39 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:40 # Locations where different types of modules should be installed. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:76 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:85 tcl: $spack/share/spack/modules | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:91 lmod: $spack/share/spack/lmod | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:96 test_stage: ~/.spack/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:104 misc_cache: ~/.spack/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:110 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:115 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:120 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:128 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:137 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:149 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:163 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:170 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:178 ccache: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:184 concretizer: original | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:189 db_lock_timeout: 300 | |
| _builtin package_lock_timeout: !!null 'None' | |
| [32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = [email protected]:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = [email protected]: | |
| [32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m | |
| [32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m | |
| [32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m | |
| [32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m | |
| [32;1m$ echo New ref for ${SPACK_PACKAGE} is ${PACKAGE_REF}[0;m | |
| New ref for coreneuron is commit="fca92bfe02a7964cdd27baaaf5dee2c6abcbcbba" | |
| [32;1m$ sed -i -e "/^\s*version\s*(\s*\(['\"]\)develop\1/ { s/,\s*\(commit\|tag\|branch\)=\([\"']\)[^\"']\+\2//g; s#)#, ${PACKAGE_REF})#; }" "${SPACK_PACKAGE_FILE}"[0;m | |
| [32;1m$ (cd $(dirname "${SPACK_PACKAGE_FILE}") && git diff "${SPACK_PACKAGE_FILE}")[0;m | |
| diff --git a/var/spack/repos/builtin/packages/coreneuron/package.py b/var/spack/repos/builtin/packages/coreneuron/package.py | |
| index b5718ae..b269d09 100644 | |
| --- a/var/spack/repos/builtin/packages/coreneuron/package.py | |
| +++ b/var/spack/repos/builtin/packages/coreneuron/package.py | |
| @@ -18,7 +18,7 @@ class Coreneuron(CMakePackage): | |
| url = "https://github.com/BlueBrain/CoreNeuron" | |
| git = "https://github.com/BlueBrain/CoreNeuron" | |
| - version('develop', branch='master') | |
| + version('develop', commit="fca92bfe02a7964cdd27baaaf5dee2c6abcbcbba") | |
| # 1.0.1 > 1.0.0.20210519 > 1.0 as far as Spack is concerned | |
| version('1.0.0.20210708', commit='d54a3aa') | |
| version('1.0.0.20210610', commit='b4a25b4') | |
| [32;1m$ fi[0;m | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron@develop%intel+tests~legacy-unit build_type=Debug | |
| [32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be slnpueymehi7yjdqxbf2l4uajdb5navc | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable git gcc[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'slnpueymehi7yjdqxbf2l4uajdb5navc' | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron@develop%intel~legacy-unit+tests build_type=Debug | |
| Concretized | |
| -------------------------------- | |
| - slnpuey coreneuron@develop%[email protected]~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl~openmp~profile+report+shared~sympy~sympyopt+tests build_type=Debug arch=linux-rhel7-x86_64 | |
| - ymcya3l ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] pvpzjkl ^[email protected]%[email protected]+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556 visibility=hidden arch=linux-rhel7-x86_64 | |
| - mxqypex ^[email protected]%[email protected]~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64 | |
| - 5mabxtb ^[email protected]%[email protected]+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64 | |
| [^] qagbv7u ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] x5el37s ^[email protected]%[email protected]~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] 2yojmmk ^[email protected]%[email protected]+cxx~debug~fortran+hl~java+mpi+pic+shared~szip~threadsafe api=none arch=linux-rhel7-x86_64 | |
| [^] wjshhip ^[email protected]%[email protected]+optimize+pic+shared arch=linux-rhel7-x86_64 | |
| [^] gwht6mm ^[email protected]%[email protected]~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| - nayogh4 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] icfhbit ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] zas5d2a ^[email protected]%[email protected]~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_JOB_CPUS_PER_NODE} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m | |
| ==> [email protected] : has external module in ['bison/3.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-ymcya3lbfxylkvsbomj2rbzbvecsldu2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k (external boost-1.73.0-pvpzjklfqyl55rerdxp63j32kpqkfr4z) | |
| ==> [email protected] : has external module in ['cmake/3.15.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-mxqypexiy6wmh4hpnmf4lbwwwqhxzscg) | |
| ==> [email protected] : has external module in ['flex/2.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-5mabxtbvp5xw7gfjcac32iffw27sdssk) | |
| ==> [email protected] : has external module in ['hpe-mpi/2.22.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.22.hmpt-r52ypu (external hpe-mpi-2.22.hmpt-qagbv7uwlmxlmpab4m3ullbu7fxvkkpa) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/zlib-1.2.11-uubmvo (external zlib-1.2.11-wjshhipoj5m66agnke3p2dsjf32qntuf) | |
| ==> [email protected] : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-nayogh4gvnag7ybxc2ud5dt4ckxod3cc) | |
| ==> [email protected] : has external module in ['python/3.8.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-icfhbitmltpoj6w6vghr23ac5erldiic) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/spdlog-1.8.1-gwht6m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/reportinglib-2.5.6-zas5d2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/hdf5-1.10.7-2yojmm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libsonata-report-1.0.0.20210610-x5el37 | |
| ==> Installing coreneuron-develop-slnpueymehi7yjdqxbf2l4uajdb5navc | |
| ==> No binary for coreneuron-develop-slnpueymehi7yjdqxbf2l4uajdb5navc found: installing from source | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/coreneuron-develop-slnpue | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then ccache -s; fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}^/${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.8.3 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-numpy/1.19.4 | |
| Autoloading py-mpi4py/3.0.3 | |
| Autoloading hpe-mpi/2.22.hmpt | |
| Autoloading py-h5py/3.1.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m | |
| Returning the number of failed builds, 0 | |
| [32;1m$ exit ${num_failures}[0;m | |
| section_end:1631139216:step_script [0Ksection_start:1631139216:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m | |
| [0;m[32;1mCreating cache coreneuron-intel-4...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=95938 revision[0;m=7a6612da version[0;m=13.12.0 | |
| ccache/: found 11677 matching files and directories[0;m | |
| Archive is up to date! [0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1631139218:archive_cache [0Ksection_start:1631139218:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m | |
| [0;m[32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=96013 revision[0;m=7a6612da version[0;m=13.12.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=56368 responseStatus[0;m=201 Created token[0;m=dhU-WAzV | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=96036 revision[0;m=7a6612da version[0;m=13.12.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=56368 responseStatus[0;m=201 Created token[0;m=dhU-WAzV | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=96062 revision[0;m=7a6612da version[0;m=13.12.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=56368 responseStatus[0;m=201 Created token[0;m=dhU-WAzV | |
| section_end:1631139220:upload_artifacts_on_success [0Ksection_start:1631139220:cleanup_file_variables [0K[0K[36;1mCleaning up file based variables[0;m | |
| [0;msection_end:1631139221:cleanup_file_variables [0K[32;1mJob succeeded | |
| [0;m |
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| [0KRunning with gitlab-runner 13.12.0 (7a6612da) | |
| [0;m[0K on BB5 map runner pnPo3yJy | |
| [0;msection_start:1631141570:resolve_secrets [0K[0K[36;1mResolving secrets[0;m | |
| [0;msection_end:1631141570:resolve_secrets [0Ksection_start:1631141570:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m | |
| [0;m[0KUsing Custom executor with driver BB5 PROD runner v0.0.3... | |
| [0;mBB5 PROD runner running on bbpv1.epfl.ch, version 13.12.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor727907973, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 16159, build ref fca92bfe02a7964cdd27baaaf5dee2c6abcbcbba, job ID 56369 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P16159 | |
| A slurm job will be created with name GL_J56369_PROD_P112_CP0_C0 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job eligible for phase1 and phase2, setting partition=prod_p2,prod_p1 | |
| Submitted batch job 2544318 | |
| job state: R | |
| section_end:1631141709:prepare_executor [0Ksection_start:1631141709:prepare_script [0K[0K[36;1mPreparing environment[0;m | |
| [0;mRunning on r5i1n2 via bbpv1.epfl.ch... | |
| section_end:1631141711:prepare_script [0Ksection_start:1631141711:get_sources [0K[0K[36;1mGetting source from Git repository[0;m | |
| [0;m[32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1631141715:get_sources [0Ksection_start:1631141715:restore_cache [0K[0K[36;1mRestoring cache[0;m | |
| [0;m[32;1mChecking cache for coreneuron-nvhpc-4...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=97687 revision[0;m=7a6612da version[0;m=13.12.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1631141725:restore_cache [0Ksection_start:1631141725:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m | |
| [0;m[32;1mDownloading artifacts for build:nmodl:gpu (56366)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=97737 revision[0;m=7a6612da version[0;m=13.12.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=56366 responseStatus[0;m=200 OK token[0;m=x6ZrZman | |
| section_end:1631141726:download_artifacts [0Ksection_start:1631141726:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m | |
| [0;m[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426 | |
| [0;m[32;1m$ SPACK_PACKAGE_DEPENDENCIES="${SPACK_PACKAGE_DEPENDENCIES}^eigen%gcc"[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_CONFIG}[0;m | |
| [32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56369/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56369/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56369/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:69 - $tempdir/$user/spack-stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 - ~/.spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 # - $spack/var/spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 # Directory in which to run tests and store test results. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 # Tests will be stored in directories named by date/time and package | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56369/spack-config/config.yaml:4 # name/hash. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/config.yaml:2 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56369/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/config.yaml:3 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:20 all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/config.yaml:5 root: $spack/opt/spack | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:33 build_jobs: 36 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:33 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:34 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:38 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:39 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:40 # Locations where different types of modules should be installed. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:76 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:85 tcl: $spack/share/spack/modules | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:91 lmod: $spack/share/spack/lmod | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:96 test_stage: ~/.spack/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:104 misc_cache: ~/.spack/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:110 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:115 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:120 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:128 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:137 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:149 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:163 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:170 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:178 ccache: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:184 concretizer: original | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:189 db_lock_timeout: 300 | |
| _builtin package_lock_timeout: !!null 'None' | |
| [32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = [email protected]:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = [email protected]: | |
| [32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m | |
| [32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m | |
| [32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m | |
| [32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m | |
| [32;1m$ echo New ref for ${SPACK_PACKAGE} is ${PACKAGE_REF}[0;m | |
| New ref for coreneuron is commit="fca92bfe02a7964cdd27baaaf5dee2c6abcbcbba" | |
| [32;1m$ sed -i -e "/^\s*version\s*(\s*\(['\"]\)develop\1/ { s/,\s*\(commit\|tag\|branch\)=\([\"']\)[^\"']\+\2//g; s#)#, ${PACKAGE_REF})#; }" "${SPACK_PACKAGE_FILE}"[0;m | |
| [32;1m$ (cd $(dirname "${SPACK_PACKAGE_FILE}") && git diff "${SPACK_PACKAGE_FILE}")[0;m | |
| diff --git a/var/spack/repos/builtin/packages/coreneuron/package.py b/var/spack/repos/builtin/packages/coreneuron/package.py | |
| index b5718ae..b269d09 100644 | |
| --- a/var/spack/repos/builtin/packages/coreneuron/package.py | |
| +++ b/var/spack/repos/builtin/packages/coreneuron/package.py | |
| @@ -18,7 +18,7 @@ class Coreneuron(CMakePackage): | |
| url = "https://github.com/BlueBrain/CoreNeuron" | |
| git = "https://github.com/BlueBrain/CoreNeuron" | |
| - version('develop', branch='master') | |
| + version('develop', commit="fca92bfe02a7964cdd27baaaf5dee2c6abcbcbba") | |
| # 1.0.1 > 1.0.0.20210519 > 1.0 as far as Spack is concerned | |
| version('1.0.0.20210708', commit='d54a3aa') | |
| version('1.0.0.20210610', commit='b4a25b4') | |
| [32;1m$ fi[0;m | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron@develop%nvhpc+nmodl+gpu+tests~legacy-unit~report build_type=RelWithDebInfo ^bison%gcc^flex%gcc^py-jinja2%gcc^py-sympy%gcc^py-pyyaml%gcc^/awi7vrm4eaiuzdafhedebwthgzxznx4j^eigen%gcc | |
| [32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m | |
| ==> Warning: Missing a source id for nmodl@develop | |
| [32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be 447fm7nvebzkjisj63ewsjnojxwte6nl | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable git gcc[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: '447fm7nvebzkjisj63ewsjnojxwte6nl' | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron@develop%nvhpc+gpu~legacy-unit+nmodl~report+tests build_type=RelWithDebInfo | |
| - ^bison%gcc | |
| - ^eigen%gcc | |
| - ^flex%gcc | |
| [+] ^nmodl@develop%[email protected]~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected]+libyaml arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - ^py-jinja2%gcc | |
| - ^py-pyyaml%gcc | |
| - ^py-sympy%gcc | |
| Concretized | |
| -------------------------------- | |
| - 447fm7n coreneuron@develop%[email protected]~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile~report+shared~sympy~sympyopt+tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| - 2ifshpf ^[email protected]%[email protected] patches=ad81ef1b088459a396d908295afc3809f9a25076efaa459cdd2f21eabd1f4b16 arch=linux-rhel7-x86_64 | |
| [^] qu3qasv ^[email protected]%[email protected]+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556,d56f31f2a3956630e5372b987d39cb79b5d2c71760fa150b8eb4a3f1a07e2658 visibility=hidden arch=linux-rhel7-x86_64 | |
| - gluy7kg ^[email protected]%[email protected]~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64 | |
| [^] 4phgvnp ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - l2c676j ^[email protected]%[email protected]~ipo build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| - prwvb2t ^[email protected]%[email protected]+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64 | |
| [^] jop6mvp ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - mddtpd5 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] awi7vrm ^nmodl@develop%[email protected]~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] afnqqnp ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] xpep3yw ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ujf2qes ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] v5gxu5s ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] rsay7hd ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] 5pew2nu ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] 6leiazm ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] 373m5vr ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] hgzmzzz ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] 2p3niph ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] 444mrrp ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ux4mwzh ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] tbbefeg ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] qywkw4y ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] rdab26o ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] dszppxf ^[email protected]%[email protected]+libyaml arch=linux-rhel7-x86_64 | |
| [^] ggibzjm ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] lhwntcl ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] l3syz4z ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_JOB_CPUS_PER_NODE} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m | |
| ==> [email protected] : has external module in ['bison/3.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-2ifshpf6x23hf7ccztxnrrqdx4mxt3rj) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k (external boost-1.73.0-qu3qasvmolllw4vbcf2maq2dz3hklz2r) | |
| ==> [email protected] : has external module in ['cmake/3.15.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-gluy7kgf2wgh5bfrenva7x4mtnzhr6r4) | |
| ==> [email protected] : has external module in ['cuda/11.0.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cuda-11.0.2-kb4wci (external cuda-11.0.2-4phgvnpeha2grh36f6f6w7ledwlpbcs3) | |
| ==> [email protected] : has external module in ['flex/2.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-prwvb2t3p3bo5eivmcrvx2eyffvcwfqy) | |
| ==> [email protected] : has external module in ['hpe-mpi/2.22.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.22.hmpt-r52ypu (external hpe-mpi-2.22.hmpt-jop6mvp4dll4wazl3uc7ycyupteb34ia) | |
| ==> [email protected] : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-mddtpd5kgds34dklkfm2prewsfy6becf) | |
| ==> [email protected] : has external module in ['python/3.8.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-v5gxu5slpix24wzbfiyzo52rwso5gsaa) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/libyaml-0.2.4-ggibzj | |
| ==> Installing eigen-3.5a1-l2c676jxvksj5cx5i4tcek7ek5ba4q73 | |
| ==> No binary for eigen-3.5a1-l2c676jxvksj5cx5i4tcek7ek5ba4q73 found: installing from source | |
| ==> Warning: Missing a source id for nmodl@develop | |
| ==> Fetching https://github.com/BlueBrain/eigen/archive/refs/tags/v3.5-alpha.1.tar.gz | |
| ==> eigen: Executing phase: 'cmake' | |
| ==> eigen: Executing phase: 'build' | |
| ==> eigen: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/eigen-3.5a1-l2c676 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-six-1.16.0-ux4mwz | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-pytz-2020.1-ujf2qe | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-more-itertools-8.7.0-hgzmzz | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-mpmath-1.1.0-l3syz4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-attrs-20.3.0-373m5v | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-wcwidth-0.1.7-rdab26 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-py-1.8.0-qywkw4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-pyparsing-2.4.2-444mrr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-pluggy-0.13.0-tbbefe | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-markupsafe-1.1.1-5pew2n | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-setuptools-50.3.2-rsay7h | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-pyyaml-5.3.1-dszppx | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-sympy-1.4-lhwntc | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-babel-2.7.0-xpep3y | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-packaging-19.2-2p3nip | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-jinja2-2.10.3-afnqqn | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-pytest-5.3.4-6leiaz | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.2/nmodl-develop-awi7vr | |
| ==> Installing coreneuron-develop-447fm7nvebzkjisj63ewsjnojxwte6nl | |
| ==> No binary for coreneuron-develop-447fm7nvebzkjisj63ewsjnojxwte6nl found: installing from source | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.2/coreneuron-develop-447fm7 | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then ccache -s; fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}^/${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.8.3 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-numpy/1.19.4 | |
| Autoloading py-mpi4py/3.0.3 | |
| Autoloading hpe-mpi/2.22.hmpt | |
| Autoloading py-h5py/3.1.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m | |
| Returning the number of failed builds, 0 | |
| [32;1m$ exit ${num_failures}[0;m | |
| section_end:1631142124:step_script [0Ksection_start:1631142124:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m | |
| [0;m[32;1mCreating cache coreneuron-nvhpc-4...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=102062 revision[0;m=7a6612da version[0;m=13.12.0 | |
| ccache/: found 7941 matching files and directories[0;m | |
| Archive is up to date! [0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1631142127:archive_cache [0Ksection_start:1631142127:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m | |
| [0;m[32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=102103 revision[0;m=7a6612da version[0;m=13.12.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=56369 responseStatus[0;m=201 Created token[0;m=Rm46jq3x | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=102135 revision[0;m=7a6612da version[0;m=13.12.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=56369 responseStatus[0;m=201 Created token[0;m=Rm46jq3x | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=102157 revision[0;m=7a6612da version[0;m=13.12.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=56369 responseStatus[0;m=201 Created token[0;m=Rm46jq3x | |
| section_end:1631142130:upload_artifacts_on_success [0Ksection_start:1631142130:cleanup_file_variables [0K[0K[36;1mCleaning up file based variables[0;m | |
| [0;msection_end:1631142135:cleanup_file_variables [0K[32;1mJob succeeded | |
| [0;m |
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| [0KRunning with gitlab-runner 13.12.0 (7a6612da) | |
| [0;m[0K on BB5 map runner pnPo3yJy | |
| [0;msection_start:1631140199:resolve_secrets [0K[0K[36;1mResolving secrets[0;m | |
| [0;msection_end:1631140199:resolve_secrets [0Ksection_start:1631140199:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m | |
| [0;m[0KUsing Custom executor with driver BB5 PROD runner v0.0.3... | |
| [0;mBB5 PROD runner running on bbpv1.epfl.ch, version 13.12.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor359224374, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 16159, build ref fca92bfe02a7964cdd27baaaf5dee2c6abcbcbba, job ID 56367 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P16159 | |
| A slurm job will be created with name GL_J56367_PROD_P112_CP0_C0 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job eligible for phase1 and phase2, setting partition=prod_p2,prod_p1 | |
| Submitted batch job 2542314 | |
| job state: R | |
| section_end:1631140260:prepare_executor [0Ksection_start:1631140260:prepare_script [0K[0K[36;1mPreparing environment[0;m | |
| [0;mRunning on r4i3n18 via bbpv1.epfl.ch... | |
| section_end:1631140260:prepare_script [0Ksection_start:1631140260:get_sources [0K[0K[36;1mGetting source from Git repository[0;m | |
| [0;m[32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1631140261:get_sources [0Ksection_start:1631140261:restore_cache [0K[0K[36;1mRestoring cache[0;m | |
| [0;m[32;1mChecking cache for coreneuron-intel-4...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=164666 revision[0;m=7a6612da version[0;m=13.12.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1631140270:restore_cache [0Ksection_start:1631140270:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m | |
| [0;m[32;1mDownloading artifacts for build:nmodl:intel (56365)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=164719 revision[0;m=7a6612da version[0;m=13.12.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=56365 responseStatus[0;m=200 OK token[0;m=ixWEWDxB | |
| section_end:1631140271:download_artifacts [0Ksection_start:1631140271:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m | |
| [0;m[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426 | |
| [0;m[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_CONFIG}[0;m | |
| [32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56367/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56367/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56367/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:69 - $tempdir/$user/spack-stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 - ~/.spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 # - $spack/var/spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 # Directory in which to run tests and store test results. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 # Tests will be stored in directories named by date/time and package | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56367/spack-config/config.yaml:4 # name/hash. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/config.yaml:2 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56367/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/config.yaml:3 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:20 all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/config.yaml:5 root: $spack/opt/spack | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:33 build_jobs: 36 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:33 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:34 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:38 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:39 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:40 # Locations where different types of modules should be installed. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:76 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:85 tcl: $spack/share/spack/modules | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:91 lmod: $spack/share/spack/lmod | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:96 test_stage: ~/.spack/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:104 misc_cache: ~/.spack/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:110 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:115 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:120 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:128 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:137 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:149 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:163 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:170 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:178 ccache: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:184 concretizer: original | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:189 db_lock_timeout: 300 | |
| _builtin package_lock_timeout: !!null 'None' | |
| [32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = [email protected]:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = [email protected]: | |
| [32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m | |
| [32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m | |
| [32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m | |
| [32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m | |
| [32;1m$ echo New ref for ${SPACK_PACKAGE} is ${PACKAGE_REF}[0;m | |
| New ref for coreneuron is commit="fca92bfe02a7964cdd27baaaf5dee2c6abcbcbba" | |
| [32;1m$ sed -i -e "/^\s*version\s*(\s*\(['\"]\)develop\1/ { s/,\s*\(commit\|tag\|branch\)=\([\"']\)[^\"']\+\2//g; s#)#, ${PACKAGE_REF})#; }" "${SPACK_PACKAGE_FILE}"[0;m | |
| [32;1m$ (cd $(dirname "${SPACK_PACKAGE_FILE}") && git diff "${SPACK_PACKAGE_FILE}")[0;m | |
| diff --git a/var/spack/repos/builtin/packages/coreneuron/package.py b/var/spack/repos/builtin/packages/coreneuron/package.py | |
| index b5718ae..b269d09 100644 | |
| --- a/var/spack/repos/builtin/packages/coreneuron/package.py | |
| +++ b/var/spack/repos/builtin/packages/coreneuron/package.py | |
| @@ -18,7 +18,7 @@ class Coreneuron(CMakePackage): | |
| url = "https://github.com/BlueBrain/CoreNeuron" | |
| git = "https://github.com/BlueBrain/CoreNeuron" | |
| - version('develop', branch='master') | |
| + version('develop', commit="fca92bfe02a7964cdd27baaaf5dee2c6abcbcbba") | |
| # 1.0.1 > 1.0.0.20210519 > 1.0 as far as Spack is concerned | |
| version('1.0.0.20210708', commit='d54a3aa') | |
| version('1.0.0.20210610', commit='b4a25b4') | |
| [32;1m$ fi[0;m | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron@develop%intel+nmodl+tests~legacy-unit build_type=Debug ^/lqyttqytclxdwwickak7uvjmb6a3au3g | |
| [32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m | |
| ==> Warning: Missing a source id for nmodl@develop | |
| [32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be qbq5kwhq7demfuzvegvqnmeu4bhs4fvj | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable git gcc[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'qbq5kwhq7demfuzvegvqnmeu4bhs4fvj' | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron@develop%intel~legacy-unit+nmodl+tests build_type=Debug | |
| [+] ^nmodl@develop%[email protected]~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected]+libyaml arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| Concretized | |
| -------------------------------- | |
| - qbq5kwh coreneuron@develop%[email protected]~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared~sympy~sympyopt+tests build_type=Debug arch=linux-rhel7-x86_64 | |
| - ymcya3l ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] pvpzjkl ^[email protected]%[email protected]+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556 visibility=hidden arch=linux-rhel7-x86_64 | |
| - mxqypex ^[email protected]%[email protected]~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64 | |
| - fent2eu ^[email protected]%[email protected]~ipo build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| - 5mabxtb ^[email protected]%[email protected]+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64 | |
| [^] qagbv7u ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] x5el37s ^[email protected]%[email protected]~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] 2yojmmk ^[email protected]%[email protected]+cxx~debug~fortran+hl~java+mpi+pic+shared~szip~threadsafe api=none arch=linux-rhel7-x86_64 | |
| [^] wjshhip ^[email protected]%[email protected]+optimize+pic+shared arch=linux-rhel7-x86_64 | |
| [^] gwht6mm ^[email protected]%[email protected]~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| - nayogh4 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] lqyttqy ^nmodl@develop%[email protected]~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] ubiktsv ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] yrbfda2 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] oe2c27i ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] icfhbit ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] xfgkmkd ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] oe2hrft ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] jo63uk3 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] kcyedyh ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] mikhjgq ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] hziuwhj ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] vpsqgcg ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] xgnwei3 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] gc3zsis ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] 557icag ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] za7jmvs ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] chpzzlm ^[email protected]%[email protected]+libyaml arch=linux-rhel7-x86_64 | |
| [^] 4237mpr ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] runxrmn ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] d6t5uhn ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] zas5d2a ^[email protected]%[email protected]~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_JOB_CPUS_PER_NODE} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m | |
| ==> [email protected] : has external module in ['bison/3.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-ymcya3lbfxylkvsbomj2rbzbvecsldu2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k (external boost-1.73.0-pvpzjklfqyl55rerdxp63j32kpqkfr4z) | |
| ==> [email protected] : has external module in ['cmake/3.15.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-mxqypexiy6wmh4hpnmf4lbwwwqhxzscg) | |
| ==> [email protected] : has external module in ['flex/2.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-5mabxtbvp5xw7gfjcac32iffw27sdssk) | |
| ==> [email protected] : has external module in ['hpe-mpi/2.22.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.22.hmpt-r52ypu (external hpe-mpi-2.22.hmpt-qagbv7uwlmxlmpab4m3ullbu7fxvkkpa) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/zlib-1.2.11-uubmvo (external zlib-1.2.11-wjshhipoj5m66agnke3p2dsjf32qntuf) | |
| ==> [email protected] : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-nayogh4gvnag7ybxc2ud5dt4ckxod3cc) | |
| ==> [email protected] : has external module in ['python/3.8.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-icfhbitmltpoj6w6vghr23ac5erldiic) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libyaml-0.2.4-4237mp | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/spdlog-1.8.1-gwht6m | |
| ==> Installing eigen-3.5a1-fent2eurqlmdrnxy5dbnl73ruub5qsdz | |
| ==> No binary for eigen-3.5a1-fent2eurqlmdrnxy5dbnl73ruub5qsdz found: installing from source | |
| ==> Warning: Missing a source id for nmodl@develop | |
| ==> Fetching https://github.com/BlueBrain/eigen/archive/refs/tags/v3.5-alpha.1.tar.gz | |
| ==> eigen: Executing phase: 'cmake' | |
| ==> eigen: Executing phase: 'build' | |
| ==> eigen: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/eigen-3.5a1-fent2e | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/reportinglib-2.5.6-zas5d2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/hdf5-1.10.7-2yojmm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-setuptools-50.3.2-xfgkmk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pytz-2020.1-oe2c27 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-mpmath-1.1.0-d6t5uh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-attrs-20.3.0-kcyedy | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-more-itertools-8.7.0-mikhjg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pyparsing-2.4.2-vpsqgc | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pluggy-0.13.0-gc3zsi | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-markupsafe-1.1.1-oe2hrf | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-py-1.8.0-557ica | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-six-1.16.0-xgnwei | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-wcwidth-0.1.7-za7jmv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pyyaml-5.3.1-chpzzl | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libsonata-report-1.0.0.20210610-x5el37 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-babel-2.7.0-yrbfda | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-sympy-1.4-runxrm | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-packaging-19.2-hziuwh | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-jinja2-2.10.3-ubikts | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pytest-5.3.4-jo63uk | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/nmodl-develop-lqyttq | |
| ==> Installing coreneuron-develop-qbq5kwhq7demfuzvegvqnmeu4bhs4fvj | |
| ==> No binary for coreneuron-develop-qbq5kwhq7demfuzvegvqnmeu4bhs4fvj found: installing from source | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/coreneuron-develop-qbq5kw | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then ccache -s; fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}^/${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.8.3 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-numpy/1.19.4 | |
| Autoloading py-mpi4py/3.0.3 | |
| Autoloading hpe-mpi/2.22.hmpt | |
| Autoloading py-h5py/3.1.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m | |
| Returning the number of failed builds, 0 | |
| [32;1m$ exit ${num_failures}[0;m | |
| section_end:1631140433:step_script [0Ksection_start:1631140433:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m | |
| [0;m[32;1mCreating cache coreneuron-intel-4...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=168302 revision[0;m=7a6612da version[0;m=13.12.0 | |
| ccache/: found 11677 matching files and directories[0;m | |
| Archive is up to date! [0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1631140434:archive_cache [0Ksection_start:1631140434:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m | |
| [0;m[32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=168344 revision[0;m=7a6612da version[0;m=13.12.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=56367 responseStatus[0;m=201 Created token[0;m=QZ42kBCj | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=168366 revision[0;m=7a6612da version[0;m=13.12.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=56367 responseStatus[0;m=201 Created token[0;m=QZ42kBCj | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=168390 revision[0;m=7a6612da version[0;m=13.12.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=56367 responseStatus[0;m=201 Created token[0;m=QZ42kBCj | |
| section_end:1631140435:upload_artifacts_on_success [0Ksection_start:1631140435:cleanup_file_variables [0K[0K[36;1mCleaning up file based variables[0;m | |
| [0;msection_end:1631140435:cleanup_file_variables [0K[32;1mJob succeeded | |
| [0;m |
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| [0KRunning with gitlab-runner 13.12.0 (7a6612da) | |
| [0;m[0K on BB5 map runner pnPo3yJy | |
| [0;msection_start:1631139417:resolve_secrets [0K[0K[36;1mResolving secrets[0;m | |
| [0;msection_end:1631139417:resolve_secrets [0Ksection_start:1631139417:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m | |
| [0;m[0KUsing Custom executor with driver BB5 PROD runner v0.0.3... | |
| [0;mBB5 PROD runner running on bbpv1.epfl.ch, version 13.12.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor988693058, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 16159, build ref fca92bfe02a7964cdd27baaaf5dee2c6abcbcbba, job ID 56378 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P16159 | |
| A slurm job will be created with name GL_J56378_PROD_P112_CP3_C3 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job eligible for phase1 and phase2, setting partition=prod_p2,prod_p1 | |
| Submitted batch job 2542175 | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| section_end:1631139486:prepare_executor [0Ksection_start:1631139486:prepare_script [0K[0K[36;1mPreparing environment[0;m | |
| [0;mRunning on r5i1n20 via bbpv1.epfl.ch... | |
| section_end:1631139489:prepare_script [0Ksection_start:1631139489:get_sources [0K[0K[36;1mGetting source from Git repository[0;m | |
| [0;m[32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1631139489:get_sources [0Ksection_start:1631139489:restore_cache [0K[0K[36;1mRestoring cache[0;m | |
| [0;m[32;1mChecking cache for neuron-nvhpc-4...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=329943 revision[0;m=7a6612da version[0;m=13.12.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1631139531:restore_cache [0Ksection_start:1631139531:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m | |
| [0;m[32;1mDownloading artifacts for build:coreneuron:gpu (56370)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=330037 revision[0;m=7a6612da version[0;m=13.12.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=56370 responseStatus[0;m=200 OK token[0;m=ujsQ7_ae | |
| section_end:1631139532:download_artifacts [0Ksection_start:1631139532:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m | |
| [0;m[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426 | |
| [0;m[32;1m$ SPACK_PACKAGE_DEPENDENCIES="${SPACK_PACKAGE_DEPENDENCIES}^py-cython%gcc^py-numpy%gcc"[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_CONFIG}[0;m | |
| [32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56378/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56378/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56378/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:69 - $tempdir/$user/spack-stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 - ~/.spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 # - $spack/var/spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 # Directory in which to run tests and store test results. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 # Tests will be stored in directories named by date/time and package | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56378/spack-config/config.yaml:4 # name/hash. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/config.yaml:2 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56378/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/config.yaml:3 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:20 all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/config.yaml:5 root: $spack/opt/spack | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:33 build_jobs: 36 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:33 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:34 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:38 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:39 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:40 # Locations where different types of modules should be installed. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:76 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:85 tcl: $spack/share/spack/modules | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:91 lmod: $spack/share/spack/lmod | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:96 test_stage: ~/.spack/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:104 misc_cache: ~/.spack/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:110 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:115 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:120 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:128 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:137 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:149 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:163 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:170 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:178 ccache: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:184 concretizer: original | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:189 db_lock_timeout: 300 | |
| _builtin package_lock_timeout: !!null 'None' | |
| [32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = [email protected]:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = [email protected]: | |
| [32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m | |
| [32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m | |
| [32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m | |
| [32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m | |
| [32;1m$ echo New ref for ${SPACK_PACKAGE} is ${PACKAGE_REF}[0;m | |
| New ref for neuron is branch="master" | |
| [32;1m$ sed -i -e "/^\s*version\s*(\s*\(['\"]\)develop\1/ { s/,\s*\(commit\|tag\|branch\)=\([\"']\)[^\"']\+\2//g; s#)#, ${PACKAGE_REF})#; }" "${SPACK_PACKAGE_FILE}"[0;m | |
| [32;1m$ (cd $(dirname "${SPACK_PACKAGE_FILE}") && git diff "${SPACK_PACKAGE_FILE}")[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron@develop%nvhpc+coreneuron+debug+tests~legacy-unit ^/ekzdtgq26p6y5mzmpphbjqbifw32enfk^py-cython%gcc^py-numpy%gcc | |
| [32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m | |
| ==> Warning: Missing a source id for neuron@develop | |
| [32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be qdta367h6ly225azfnup34o2tpbkhbcb | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable git gcc[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'qdta367h6ly225azfnup34o2tpbkhbcb' | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron@develop%nvhpc+coreneuron+debug~legacy-unit+tests | |
| [+] ^coreneuron@develop%[email protected]~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl~openmp~profile~report+shared~sympy~sympyopt+tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected]+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556,d56f31f2a3956630e5372b987d39cb79b5d2c71760fa150b8eb4a3f1a07e2658 visibility=hidden arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - ^py-cython%gcc | |
| - ^py-numpy%gcc | |
| Concretized | |
| -------------------------------- | |
| - qdta367 neuron@develop%[email protected]+binary+cmake~codechecks+coreneuron~cross-compile+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+multisend~profile+pysetup+python+rx3d+shared+tests build_type=RelWithDebInfo patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c arch=linux-rhel7-x86_64 | |
| - 2ifshpf ^[email protected]%[email protected] patches=ad81ef1b088459a396d908295afc3809f9a25076efaa459cdd2f21eabd1f4b16 arch=linux-rhel7-x86_64 | |
| - gluy7kg ^[email protected]%[email protected]~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64 | |
| [+] ekzdtgq ^coreneuron@develop%[email protected]~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl~openmp~profile~report+shared~sympy~sympyopt+tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] qu3qasv ^[email protected]%[email protected]+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556,d56f31f2a3956630e5372b987d39cb79b5d2c71760fa150b8eb4a3f1a07e2658 visibility=hidden arch=linux-rhel7-x86_64 | |
| [^] 4phgvnp ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] jop6mvp ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - prwvb2t ^[email protected]%[email protected]+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64 | |
| [^] 5lqiecm ^[email protected]%[email protected]+bzip2+curses+git~libunistring+libxml2+tar+xz patches=6e530daaae14725d578d6cafbf7d523accc9ed29fd817bd421cf98a5f51e9e1b,bbe9f0539aa504966ac104224d25a9260faa1015ed3adda936467be9c7de4eae,fb27a3fb5e414bdc50ffebbbe2da986473df70a493caa4396226f51a67c55424 arch=linux-rhel7-x86_64 | |
| [^] id52ywi ^[email protected]%[email protected]+shared arch=linux-rhel7-x86_64 | |
| [^] o2ibs4c ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] hbvd5d6 ^[email protected]%[email protected]~python patches=05ff238cf435825ef835c7ae39376b52dc83d8caf19e962f0766c841386a305a,10a88ad47f9797cf7cf2d7d07241f665a3b6d1f31fa026728c8c2ae93e1664e9 arch=linux-rhel7-x86_64 | |
| [^] nfl4mod ^[email protected]%[email protected] patches=6e94c68d45d4cb8148c8c53699921d10b13784f758f0563ce64c838e0ca48ceb arch=linux-rhel7-x86_64 | |
| [^] qd22znx ^[email protected]%[email protected]~pic arch=linux-rhel7-x86_64 | |
| [^] riwuxjc ^[email protected]%[email protected]+optimize+pic+shared arch=linux-rhel7-x86_64 | |
| [^] ijdcmaa ^[email protected]%[email protected]~symlinks+termlib arch=linux-rhel7-x86_64 | |
| [^] tvukhb5 ^[email protected]%[email protected] patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,4e8cdf69294c376c45c39d059f11769c5c996c2d84cdfb56eb69890e0aa4e991,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-x86_64 | |
| - mddtpd5 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] eg6a4hu ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] rsay7hd ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] v5gxu5s ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] i4mwhdw ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ottdmb2 ^[email protected]%[email protected]+blas+lapack arch=linux-rhel7-x86_64 | |
| [^] syahjjg ^[email protected]%[email protected]~ilp64+shared threads=none arch=linux-rhel7-x86_64 | |
| [^] 6leiazm ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] 373m5vr ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] hgzmzzz ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] 2p3niph ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] 444mrrp ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ux4mwzh ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] tbbefeg ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] zbwtznm ^[email protected]%[email protected]+toml arch=linux-rhel7-x86_64 | |
| [^] k3yba4y ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] qywkw4y ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] rdab26o ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] d32wle3 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] 2j2zh6h ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] pmg6zft ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_JOB_CPUS_PER_NODE} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m | |
| ==> [email protected] : has external module in ['bison/3.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-2ifshpf6x23hf7ccztxnrrqdx4mxt3rj) | |
| ==> [email protected] : has external module in ['cmake/3.15.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-gluy7kgf2wgh5bfrenva7x4mtnzhr6r4) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k (external boost-1.73.0-qu3qasvmolllw4vbcf2maq2dz3hklz2r) | |
| ==> [email protected] : has external module in ['cuda/11.0.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cuda-11.0.2-kb4wci (external cuda-11.0.2-4phgvnpeha2grh36f6f6w7ledwlpbcs3) | |
| ==> [email protected] : has external module in ['hpe-mpi/2.22.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.22.hmpt-r52ypu (external hpe-mpi-2.22.hmpt-jop6mvp4dll4wazl3uc7ycyupteb34ia) | |
| ==> [email protected] : has external module in ['flex/2.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-prwvb2t3p3bo5eivmcrvx2eyffvcwfqy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bzip2-1.0.8-vatuhz (external bzip2-1.0.8-id52ywihy7al2fabuv3lgb4rhoz2znfn) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/libiconv-1.16-o2ibs4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/pkgconf-1.7.3-nfl4mo | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/xz-5.2.5-qd22zn | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/zlib-1.2.11-uubmvo (external zlib-1.2.11-riwuxjcya5j363kxy7tgaac4r5qbijy7) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ncurses-6.2-xvsnay (external ncurses-6.2-ijdcmaauxxu3dblhx4qrqxsr5tmagbad) | |
| [+] /usr (external tar-1.28-tvukhb5y7rnjiw2clctp4ds3uyk4stlp) | |
| ==> [email protected] : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-mddtpd5kgds34dklkfm2prewsfy6becf) | |
| ==> [email protected] : has external module in ['python/3.8.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-v5gxu5slpix24wzbfiyzo52rwso5gsaa) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/intel-mkl-2018.3.222-xjuqsf (external intel-mkl-2018.3.222-syahjjgpawq4c4jicb753yciaowfyr75) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/readline-8.0-f2v4sr (external readline-8.0-pmg6zftwkbtasfhlfscbmkdurshjk773) | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.2/coreneuron-develop-ekzdtg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/libxml2-2.9.10-hbvd5d | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-six-1.16.0-ux4mwz | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-setuptools-50.3.2-rsay7h | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/gettext-0.21-5lqiec | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-coverage-5.3-2j2zh6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-pyparsing-2.4.2-444mrr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-wcwidth-0.1.7-rdab26 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-mpi4py-3.0.3-i4mwhd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-more-itertools-8.7.0-hgzmzz | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-toml-0.10.0-k3yba4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-attrs-20.3.0-373m5v | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/py-cython-0.29.21-eg6a4h | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-packaging-19.2-2p3nip | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-setuptools-scm-4.1.2-zbwtzn | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/py-numpy-1.19.4-ottdmb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-pluggy-0.13.0-tbbefe | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-py-1.8.0-qywkw4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-pytest-5.3.4-6leiaz | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-pytest-cov-2.8.1-d32wle | |
| ==> Installing neuron-develop-qdta367h6ly225azfnup34o2tpbkhbcb | |
| ==> No binary for neuron-develop-qdta367h6ly225azfnup34o2tpbkhbcb found: installing from source | |
| ==> Warning: Missing a source id for neuron@develop | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.2/neuron-develop-qdta36 | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then ccache -s; fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}^/${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.8.3 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-numpy/1.19.4 | |
| Autoloading py-mpi4py/3.0.3 | |
| Autoloading hpe-mpi/2.22.hmpt | |
| Autoloading py-h5py/3.1.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m | |
| Returning the number of failed builds, 0 | |
| [32;1m$ exit ${num_failures}[0;m | |
| section_end:1631140011:step_script [0Ksection_start:1631140011:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m | |
| [0;m[32;1mCreating cache neuron-nvhpc-4...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=340731 revision[0;m=7a6612da version[0;m=13.12.0 | |
| ccache/: found 56261 matching files and directories[0;m | |
| Archive is up to date! [0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1631140023:archive_cache [0Ksection_start:1631140023:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m | |
| [0;m[32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=340826 revision[0;m=7a6612da version[0;m=13.12.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=56378 responseStatus[0;m=201 Created token[0;m=ticrhi2x | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=340850 revision[0;m=7a6612da version[0;m=13.12.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=56378 responseStatus[0;m=201 Created token[0;m=ticrhi2x | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=340872 revision[0;m=7a6612da version[0;m=13.12.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=56378 responseStatus[0;m=201 Created token[0;m=ticrhi2x | |
| section_end:1631140032:upload_artifacts_on_success [0Ksection_start:1631140032:cleanup_file_variables [0K[0K[36;1mCleaning up file based variables[0;m | |
| [0;msection_end:1631140035:cleanup_file_variables [0K[32;1mJob succeeded | |
| [0;m |
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| [0KRunning with gitlab-runner 13.12.0 (7a6612da) | |
| [0;m[0K on BB5 map runner pnPo3yJy | |
| [0;msection_start:1631139230:resolve_secrets [0K[0K[36;1mResolving secrets[0;m | |
| [0;msection_end:1631139230:resolve_secrets [0Ksection_start:1631139230:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m | |
| [0;m[0KUsing Custom executor with driver BB5 PROD runner v0.0.3... | |
| [0;mBB5 PROD runner running on bbpv1.epfl.ch, version 13.12.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor995572800, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 16159, build ref fca92bfe02a7964cdd27baaaf5dee2c6abcbcbba, job ID 56376 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P16159 | |
| A slurm job will be created with name GL_J56376_PROD_P112_CP4_C4 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job eligible for phase1 and phase2, setting partition=prod_p2,prod_p1 | |
| Submitted batch job 2541239 | |
| job state: R | |
| section_end:1631139292:prepare_executor [0Ksection_start:1631139292:prepare_script [0K[0K[36;1mPreparing environment[0;m | |
| [0;mRunning on r4i3n18 via bbpv1.epfl.ch... | |
| section_end:1631139294:prepare_script [0Ksection_start:1631139294:get_sources [0K[0K[36;1mGetting source from Git repository[0;m | |
| [0;m[32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1631139294:get_sources [0Ksection_start:1631139294:restore_cache [0K[0K[36;1mRestoring cache[0;m | |
| [0;m[32;1mChecking cache for neuron-intel-4...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=151167 revision[0;m=7a6612da version[0;m=13.12.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1631139348:restore_cache [0Ksection_start:1631139348:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m | |
| [0;m[32;1mDownloading artifacts for build:coreneuron:intel (56368)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=152968 revision[0;m=7a6612da version[0;m=13.12.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=56368 responseStatus[0;m=200 OK token[0;m=dhU-WAzV | |
| section_end:1631139349:download_artifacts [0Ksection_start:1631139349:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m | |
| [0;m[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426 | |
| [0;m[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_CONFIG}[0;m | |
| [32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56376/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56376/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56376/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:69 - $tempdir/$user/spack-stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 - ~/.spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 # - $spack/var/spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 # Directory in which to run tests and store test results. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 # Tests will be stored in directories named by date/time and package | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56376/spack-config/config.yaml:4 # name/hash. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/config.yaml:2 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56376/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/config.yaml:3 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:20 all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/config.yaml:5 root: $spack/opt/spack | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:33 build_jobs: 36 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:33 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:34 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:38 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:39 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:40 # Locations where different types of modules should be installed. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:76 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:85 tcl: $spack/share/spack/modules | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:91 lmod: $spack/share/spack/lmod | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:96 test_stage: ~/.spack/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:104 misc_cache: ~/.spack/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:110 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:115 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:120 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:128 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:137 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:149 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:163 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:170 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:178 ccache: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:184 concretizer: original | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:189 db_lock_timeout: 300 | |
| _builtin package_lock_timeout: !!null 'None' | |
| [32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = [email protected]:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = [email protected]: | |
| [32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m | |
| [32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m | |
| [32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m | |
| [32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m | |
| [32;1m$ echo New ref for ${SPACK_PACKAGE} is ${PACKAGE_REF}[0;m | |
| New ref for neuron is branch="master" | |
| [32;1m$ sed -i -e "/^\s*version\s*(\s*\(['\"]\)develop\1/ { s/,\s*\(commit\|tag\|branch\)=\([\"']\)[^\"']\+\2//g; s#)#, ${PACKAGE_REF})#; }" "${SPACK_PACKAGE_FILE}"[0;m | |
| [32;1m$ (cd $(dirname "${SPACK_PACKAGE_FILE}") && git diff "${SPACK_PACKAGE_FILE}")[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron@develop%intel+coreneuron+debug+tests~legacy-unit ^/slnpueymehi7yjdqxbf2l4uajdb5navc | |
| [32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m | |
| ==> Warning: Missing a source id for neuron@develop | |
| [32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be 5kdcka37x3gxke2xyyl4ihllzpls2crx | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable git gcc[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: '5kdcka37x3gxke2xyyl4ihllzpls2crx' | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron@develop%intel+coreneuron+debug~legacy-unit+tests | |
| [+] ^coreneuron@develop%[email protected]~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl~openmp~profile+report+shared~sympy~sympyopt+tests build_type=Debug arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected]+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556 visibility=hidden arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected]~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected]+cxx~debug~fortran+hl~java+mpi+pic+shared~szip~threadsafe api=none arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected]+optimize+pic+shared arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected]~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected]~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| Concretized | |
| -------------------------------- | |
| - 5kdcka3 neuron@develop%[email protected]+binary+cmake~codechecks+coreneuron~cross-compile+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+multisend~profile+pysetup+python+rx3d+shared+tests build_type=RelWithDebInfo patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c arch=linux-rhel7-x86_64 | |
| - ymcya3l ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - mxqypex ^[email protected]%[email protected]~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64 | |
| [+] slnpuey ^coreneuron@develop%[email protected]~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl~openmp~profile+report+shared~sympy~sympyopt+tests build_type=Debug arch=linux-rhel7-x86_64 | |
| [^] pvpzjkl ^[email protected]%[email protected]+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556 visibility=hidden arch=linux-rhel7-x86_64 | |
| [^] qagbv7u ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] x5el37s ^[email protected]%[email protected]~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] 2yojmmk ^[email protected]%[email protected]+cxx~debug~fortran+hl~java+mpi+pic+shared~szip~threadsafe api=none arch=linux-rhel7-x86_64 | |
| [^] wjshhip ^[email protected]%[email protected]+optimize+pic+shared arch=linux-rhel7-x86_64 | |
| [^] gwht6mm ^[email protected]%[email protected]~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] zas5d2a ^[email protected]%[email protected]~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| - 5mabxtb ^[email protected]%[email protected]+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64 | |
| [^] 6vrzcuv ^[email protected]%[email protected]+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel7-x86_64 | |
| [^] 6zbb66a ^[email protected]%[email protected]+shared arch=linux-rhel7-x86_64 | |
| [^] qlmq4dv ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] 6lr2umn ^[email protected]%[email protected]~python arch=linux-rhel7-x86_64 | |
| [^] 2qyzkdl ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] wzx3yy4 ^[email protected]%[email protected]~pic arch=linux-rhel7-x86_64 | |
| [^] nedfnju ^[email protected]%[email protected]~symlinks+termlib arch=linux-rhel7-x86_64 | |
| [^] d4pg4b2 ^[email protected]%[email protected] patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-x86_64 | |
| - nayogh4 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] i3t5fut ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] xfgkmkd ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] icfhbit ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] yg3vxts ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] l643i7a ^[email protected]%[email protected]+blas+lapack arch=linux-rhel7-x86_64 | |
| [^] nnxc4wm ^[email protected]%[email protected]~ilp64+shared threads=none arch=linux-rhel7-x86_64 | |
| [+] jo63uk3 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] kcyedyh ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] mikhjgq ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] hziuwhj ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] vpsqgcg ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] xgnwei3 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] gc3zsis ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ze65gmo ^[email protected]%[email protected]+toml arch=linux-rhel7-x86_64 | |
| [^] p553wsa ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] 557icag ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] za7jmvs ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - zniig3b ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - 2v5wfwa ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] kej56sd ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_JOB_CPUS_PER_NODE} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m | |
| ==> [email protected] : has external module in ['bison/3.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-ymcya3lbfxylkvsbomj2rbzbvecsldu2) | |
| ==> [email protected] : has external module in ['cmake/3.15.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-mxqypexiy6wmh4hpnmf4lbwwwqhxzscg) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k (external boost-1.73.0-pvpzjklfqyl55rerdxp63j32kpqkfr4z) | |
| ==> [email protected] : has external module in ['hpe-mpi/2.22.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.22.hmpt-r52ypu (external hpe-mpi-2.22.hmpt-qagbv7uwlmxlmpab4m3ullbu7fxvkkpa) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/zlib-1.2.11-uubmvo (external zlib-1.2.11-wjshhipoj5m66agnke3p2dsjf32qntuf) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/spdlog-1.8.1-gwht6m | |
| ==> [email protected] : has external module in ['flex/2.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-5mabxtbvp5xw7gfjcac32iffw27sdssk) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bzip2-1.0.8-vatuhz (external bzip2-1.0.8-6zbb66a3uunskwyljh6sbgo36hbo7lj4) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libiconv-1.16-qlmq4d | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/pkgconf-1.7.3-2qyzkd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/xz-5.2.5-wzx3yy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ncurses-6.2-xvsnay (external ncurses-6.2-nedfnju3ptngli3lpj3occtiuoe2x6e3) | |
| [+] /usr (external tar-1.28-d4pg4b2ncvxd3p2ptw3j4os6jb5a7yvy) | |
| ==> [email protected] : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-nayogh4gvnag7ybxc2ud5dt4ckxod3cc) | |
| ==> [email protected] : has external module in ['python/3.8.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-icfhbitmltpoj6w6vghr23ac5erldiic) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/intel-mkl-2018.3.222-xjuqsf (external intel-mkl-2018.3.222-nnxc4wmon4s26gfyily3n6tqa43p36rj) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/readline-8.0-f2v4sr (external readline-8.0-kej56sdf2cwo7ximwd5foo34wzwveqxc) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/reportinglib-2.5.6-zas5d2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/hdf5-1.10.7-2yojmm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libxml2-2.9.10-6lr2um | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-six-1.16.0-xgnwei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-setuptools-50.3.2-xfgkmk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libsonata-report-1.0.0.20210610-x5el37 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/gettext-0.21-6vrzcu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-toml-0.10.0-p553ws | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-mpi4py-3.0.3-yg3vxt | |
| ==> Installing py-coverage-5.3-2v5wfwapuwn63xqjymkn5jpew7mdm6uk | |
| ==> No binary for py-coverage-5.3-2v5wfwapuwn63xqjymkn5jpew7mdm6uk found: installing from source | |
| ==> Warning: Missing a source id for neuron@develop | |
| ==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/28/280baa8ec489c4f542f8940f9c4c2181f0306a8ee1a54eceba071a449fb870a0.tar.gz | |
| ==> py-coverage: Executing phase: 'build' | |
| ==> py-coverage: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-coverage-5.3-2v5wfw | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pyparsing-2.4.2-vpsqgc | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-more-itertools-8.7.0-mikhjg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-cython-0.29.21-i3t5fu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-attrs-20.3.0-kcyedy | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-wcwidth-0.1.7-za7jmv | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/coreneuron-develop-slnpue | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-setuptools-scm-4.1.2-ze65gm | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-packaging-19.2-hziuwh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-numpy-1.19.4-l643i7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pluggy-0.13.0-gc3zsi | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-py-1.8.0-557ica | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pytest-5.3.4-jo63uk | |
| ==> Installing py-pytest-cov-2.8.1-zniig3b6klz2ibslrfa3digiozwp46fe | |
| ==> No binary for py-pytest-cov-2.8.1-zniig3b6klz2ibslrfa3digiozwp46fe found: installing from source | |
| ==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/cc/cc6742d8bac45070217169f5f72ceee1e0e55b0221f54bcf24845972d3a47f2b.tar.gz | |
| ==> py-pytest-cov: Executing phase: 'build' | |
| ==> py-pytest-cov: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pytest-cov-2.8.1-zniig3 | |
| ==> Installing neuron-develop-5kdcka37x3gxke2xyyl4ihllzpls2crx | |
| ==> No binary for neuron-develop-5kdcka37x3gxke2xyyl4ihllzpls2crx found: installing from source | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/neuron-develop-5kdcka | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then ccache -s; fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}^/${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.8.3 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-numpy/1.19.4 | |
| Autoloading py-mpi4py/3.0.3 | |
| Autoloading hpe-mpi/2.22.hmpt | |
| Autoloading py-h5py/3.1.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m | |
| Returning the number of failed builds, 0 | |
| [32;1m$ exit ${num_failures}[0;m | |
| section_end:1631139621:step_script [0Ksection_start:1631139621:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m | |
| [0;m[32;1mCreating cache neuron-intel-4...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=163192 revision[0;m=7a6612da version[0;m=13.12.0 | |
| ccache/: found 67405 matching files and directories[0;m | |
| Archive is up to date! [0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1631139630:archive_cache [0Ksection_start:1631139630:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m | |
| [0;m[32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=163251 revision[0;m=7a6612da version[0;m=13.12.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=56376 responseStatus[0;m=201 Created token[0;m=bB7mEacN | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=163273 revision[0;m=7a6612da version[0;m=13.12.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=56376 responseStatus[0;m=201 Created token[0;m=bB7mEacN | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=163297 revision[0;m=7a6612da version[0;m=13.12.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=56376 responseStatus[0;m=201 Created token[0;m=bB7mEacN | |
| section_end:1631139632:upload_artifacts_on_success [0Ksection_start:1631139632:cleanup_file_variables [0K[0K[36;1mCleaning up file based variables[0;m | |
| [0;msection_end:1631139634:cleanup_file_variables [0K[32;1mJob succeeded | |
| [0;m |
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| [0KRunning with gitlab-runner 13.12.0 (7a6612da) | |
| [0;m[0K on BB5 map runner pnPo3yJy | |
| [0;msection_start:1631142140:resolve_secrets [0K[0K[36;1mResolving secrets[0;m | |
| [0;msection_end:1631142140:resolve_secrets [0Ksection_start:1631142140:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m | |
| [0;m[0KUsing Custom executor with driver BB5 PROD runner v0.0.3... | |
| [0;mBB5 PROD runner running on bbpv1.epfl.ch, version 13.12.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor712776785, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 16159, build ref fca92bfe02a7964cdd27baaaf5dee2c6abcbcbba, job ID 56377 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P16159 | |
| A slurm job will be created with name GL_J56377_PROD_P112_CP1_C1 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job eligible for phase1 and phase2, setting partition=prod_p2,prod_p1 | |
| Submitted batch job 2544319 | |
| job state: R | |
| section_end:1631142254:prepare_executor [0Ksection_start:1631142254:prepare_script [0K[0K[36;1mPreparing environment[0;m | |
| [0;mRunning on r4i3n18 via bbpv1.epfl.ch... | |
| section_end:1631142258:prepare_script [0Ksection_start:1631142258:get_sources [0K[0K[36;1mGetting source from Git repository[0;m | |
| [0;m[32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1631142258:get_sources [0Ksection_start:1631142258:restore_cache [0K[0K[36;1mRestoring cache[0;m | |
| [0;m[32;1mChecking cache for neuron-nvhpc-4...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=172452 revision[0;m=7a6612da version[0;m=13.12.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1631142297:restore_cache [0Ksection_start:1631142297:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m | |
| [0;m[32;1mDownloading artifacts for build:coreneuron+nmodl:gpu (56369)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=172541 revision[0;m=7a6612da version[0;m=13.12.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=56369 responseStatus[0;m=200 OK token[0;m=Rm46jq3x | |
| section_end:1631142297:download_artifacts [0Ksection_start:1631142297:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m | |
| [0;m[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426 | |
| [0;m[32;1m$ SPACK_PACKAGE_DEPENDENCIES="${SPACK_PACKAGE_DEPENDENCIES}^py-cython%gcc^py-numpy%gcc"[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_CONFIG}[0;m | |
| [32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56377/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56377/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56377/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:69 - $tempdir/$user/spack-stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 - ~/.spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 # - $spack/var/spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 # Directory in which to run tests and store test results. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 # Tests will be stored in directories named by date/time and package | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56377/spack-config/config.yaml:4 # name/hash. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/config.yaml:2 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56377/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/config.yaml:3 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:20 all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/config.yaml:5 root: $spack/opt/spack | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:33 build_jobs: 36 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:33 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:34 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:38 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:39 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:40 # Locations where different types of modules should be installed. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:76 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:85 tcl: $spack/share/spack/modules | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:91 lmod: $spack/share/spack/lmod | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:96 test_stage: ~/.spack/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:104 misc_cache: ~/.spack/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:110 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:115 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:120 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:128 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:137 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:149 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:163 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:170 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:178 ccache: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:184 concretizer: original | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:189 db_lock_timeout: 300 | |
| _builtin package_lock_timeout: !!null 'None' | |
| [32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = [email protected]:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = [email protected]: | |
| [32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m | |
| [32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m | |
| [32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m | |
| [32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m | |
| [32;1m$ echo New ref for ${SPACK_PACKAGE} is ${PACKAGE_REF}[0;m | |
| New ref for neuron is branch="master" | |
| [32;1m$ sed -i -e "/^\s*version\s*(\s*\(['\"]\)develop\1/ { s/,\s*\(commit\|tag\|branch\)=\([\"']\)[^\"']\+\2//g; s#)#, ${PACKAGE_REF})#; }" "${SPACK_PACKAGE_FILE}"[0;m | |
| [32;1m$ (cd $(dirname "${SPACK_PACKAGE_FILE}") && git diff "${SPACK_PACKAGE_FILE}")[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron@develop%nvhpc+coreneuron+debug+tests~legacy-unit ^bison%gcc^flex%gcc^py-jinja2%gcc^py-sympy%gcc^py-pyyaml%gcc^/awi7vrm4eaiuzdafhedebwthgzxznx4j^eigen%gcc^/447fm7nvebzkjisj63ewsjnojxwte6nl^py-cython%gcc^py-numpy%gcc | |
| [32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m | |
| ==> Warning: Missing a source id for neuron@develop | |
| ==> Warning: Missing a source id for nmodl@develop | |
| [32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be elteezpyv242s6ewz6bmdeq2iphaajw5 | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable git gcc[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'elteezpyv242s6ewz6bmdeq2iphaajw5' | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron@develop%nvhpc+coreneuron+debug~legacy-unit+tests | |
| - ^bison%gcc | |
| [+] ^coreneuron@develop%[email protected]~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile~report+shared~sympy~sympyopt+tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected]+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556,d56f31f2a3956630e5372b987d39cb79b5d2c71760fa150b8eb4a3f1a07e2658 visibility=hidden arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected]~ipo build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^nmodl@develop%[email protected]~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected]+libyaml arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - ^eigen%gcc | |
| - ^flex%gcc | |
| [+] ^nmodl@develop%[email protected]~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected]+libyaml arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - ^py-cython%gcc | |
| - ^py-jinja2%gcc | |
| - ^py-numpy%gcc | |
| - ^py-pyyaml%gcc | |
| - ^py-sympy%gcc | |
| Concretized | |
| -------------------------------- | |
| - elteezp neuron@develop%[email protected]+binary+cmake~codechecks+coreneuron~cross-compile+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+multisend~profile+pysetup+python+rx3d+shared+tests build_type=RelWithDebInfo patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c arch=linux-rhel7-x86_64 | |
| - 2ifshpf ^[email protected]%[email protected] patches=ad81ef1b088459a396d908295afc3809f9a25076efaa459cdd2f21eabd1f4b16 arch=linux-rhel7-x86_64 | |
| - gluy7kg ^[email protected]%[email protected]~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64 | |
| [+] 447fm7n ^coreneuron@develop%[email protected]~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile~report+shared~sympy~sympyopt+tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] qu3qasv ^[email protected]%[email protected]+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556,d56f31f2a3956630e5372b987d39cb79b5d2c71760fa150b8eb4a3f1a07e2658 visibility=hidden arch=linux-rhel7-x86_64 | |
| [^] 4phgvnp ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] l2c676j ^[email protected]%[email protected]~ipo build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] jop6mvp ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] awi7vrm ^nmodl@develop%[email protected]~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] afnqqnp ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] xpep3yw ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ujf2qes ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] v5gxu5s ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] rsay7hd ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] 5pew2nu ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] 6leiazm ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] 373m5vr ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] hgzmzzz ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] 2p3niph ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] 444mrrp ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ux4mwzh ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] tbbefeg ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] qywkw4y ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] rdab26o ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] dszppxf ^[email protected]%[email protected]+libyaml arch=linux-rhel7-x86_64 | |
| [^] ggibzjm ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] lhwntcl ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] l3syz4z ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - prwvb2t ^[email protected]%[email protected]+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64 | |
| [^] 5lqiecm ^[email protected]%[email protected]+bzip2+curses+git~libunistring+libxml2+tar+xz patches=6e530daaae14725d578d6cafbf7d523accc9ed29fd817bd421cf98a5f51e9e1b,bbe9f0539aa504966ac104224d25a9260faa1015ed3adda936467be9c7de4eae,fb27a3fb5e414bdc50ffebbbe2da986473df70a493caa4396226f51a67c55424 arch=linux-rhel7-x86_64 | |
| [^] id52ywi ^[email protected]%[email protected]+shared arch=linux-rhel7-x86_64 | |
| [^] o2ibs4c ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] hbvd5d6 ^[email protected]%[email protected]~python patches=05ff238cf435825ef835c7ae39376b52dc83d8caf19e962f0766c841386a305a,10a88ad47f9797cf7cf2d7d07241f665a3b6d1f31fa026728c8c2ae93e1664e9 arch=linux-rhel7-x86_64 | |
| [^] nfl4mod ^[email protected]%[email protected] patches=6e94c68d45d4cb8148c8c53699921d10b13784f758f0563ce64c838e0ca48ceb arch=linux-rhel7-x86_64 | |
| [^] qd22znx ^[email protected]%[email protected]~pic arch=linux-rhel7-x86_64 | |
| [^] riwuxjc ^[email protected]%[email protected]+optimize+pic+shared arch=linux-rhel7-x86_64 | |
| [^] ijdcmaa ^[email protected]%[email protected]~symlinks+termlib arch=linux-rhel7-x86_64 | |
| [^] tvukhb5 ^[email protected]%[email protected] patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,4e8cdf69294c376c45c39d059f11769c5c996c2d84cdfb56eb69890e0aa4e991,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-x86_64 | |
| - mddtpd5 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] eg6a4hu ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] i4mwhdw ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ottdmb2 ^[email protected]%[email protected]+blas+lapack arch=linux-rhel7-x86_64 | |
| [^] syahjjg ^[email protected]%[email protected]~ilp64+shared threads=none arch=linux-rhel7-x86_64 | |
| [^] d32wle3 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] 2j2zh6h ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] pmg6zft ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_JOB_CPUS_PER_NODE} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m | |
| ==> [email protected] : has external module in ['bison/3.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-2ifshpf6x23hf7ccztxnrrqdx4mxt3rj) | |
| ==> [email protected] : has external module in ['cmake/3.15.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-gluy7kgf2wgh5bfrenva7x4mtnzhr6r4) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k (external boost-1.73.0-qu3qasvmolllw4vbcf2maq2dz3hklz2r) | |
| ==> [email protected] : has external module in ['cuda/11.0.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cuda-11.0.2-kb4wci (external cuda-11.0.2-4phgvnpeha2grh36f6f6w7ledwlpbcs3) | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/eigen-3.5a1-l2c676 | |
| ==> [email protected] : has external module in ['hpe-mpi/2.22.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.22.hmpt-r52ypu (external hpe-mpi-2.22.hmpt-jop6mvp4dll4wazl3uc7ycyupteb34ia) | |
| ==> [email protected] : has external module in ['python/3.8.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-v5gxu5slpix24wzbfiyzo52rwso5gsaa) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/libyaml-0.2.4-ggibzj | |
| ==> [email protected] : has external module in ['flex/2.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-prwvb2t3p3bo5eivmcrvx2eyffvcwfqy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bzip2-1.0.8-vatuhz (external bzip2-1.0.8-id52ywihy7al2fabuv3lgb4rhoz2znfn) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/libiconv-1.16-o2ibs4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/pkgconf-1.7.3-nfl4mo | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/xz-5.2.5-qd22zn | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/zlib-1.2.11-uubmvo (external zlib-1.2.11-riwuxjcya5j363kxy7tgaac4r5qbijy7) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ncurses-6.2-xvsnay (external ncurses-6.2-ijdcmaauxxu3dblhx4qrqxsr5tmagbad) | |
| [+] /usr (external tar-1.28-tvukhb5y7rnjiw2clctp4ds3uyk4stlp) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/intel-mkl-2018.3.222-xjuqsf (external intel-mkl-2018.3.222-syahjjgpawq4c4jicb753yciaowfyr75) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/readline-8.0-f2v4sr (external readline-8.0-pmg6zftwkbtasfhlfscbmkdurshjk773) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-pluggy-0.13.0-tbbefe | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-mpmath-1.1.0-l3syz4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-pytz-2020.1-ujf2qe | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-more-itertools-8.7.0-hgzmzz | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-attrs-20.3.0-373m5v | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-py-1.8.0-qywkw4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-pyparsing-2.4.2-444mrr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-setuptools-50.3.2-rsay7h | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-markupsafe-1.1.1-5pew2n | |
| ==> [email protected] : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-mddtpd5kgds34dklkfm2prewsfy6becf) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-wcwidth-0.1.7-rdab26 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-six-1.16.0-ux4mwz | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-pyyaml-5.3.1-dszppx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/libxml2-2.9.10-hbvd5d | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-sympy-1.4-lhwntc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-mpi4py-3.0.3-i4mwhd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/py-cython-0.29.21-eg6a4h | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-babel-2.7.0-xpep3y | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-coverage-5.3-2j2zh6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-packaging-19.2-2p3nip | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/gettext-0.21-5lqiec | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/py-numpy-1.19.4-ottdmb | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-jinja2-2.10.3-afnqqn | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-pytest-5.3.4-6leiaz | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.2/nmodl-develop-awi7vr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-pytest-cov-2.8.1-d32wle | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.2/coreneuron-develop-447fm7 | |
| ==> Installing neuron-develop-elteezpyv242s6ewz6bmdeq2iphaajw5 | |
| ==> No binary for neuron-develop-elteezpyv242s6ewz6bmdeq2iphaajw5 found: installing from source | |
| ==> Warning: Missing a source id for nmodl@develop | |
| ==> Warning: Missing a source id for neuron@develop | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.2/neuron-develop-elteez | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then ccache -s; fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}^/${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.8.3 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-numpy/1.19.4 | |
| Autoloading py-mpi4py/3.0.3 | |
| Autoloading hpe-mpi/2.22.hmpt | |
| Autoloading py-h5py/3.1.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m | |
| Returning the number of failed builds, 0 | |
| [32;1m$ exit ${num_failures}[0;m | |
| section_end:1631142664:step_script [0Ksection_start:1631142664:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m | |
| [0;m[32;1mCreating cache neuron-nvhpc-4...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=181429 revision[0;m=7a6612da version[0;m=13.12.0 | |
| ccache/: found 56261 matching files and directories[0;m | |
| Archive is up to date! [0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1631142667:archive_cache [0Ksection_start:1631142667:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m | |
| [0;m[32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=181476 revision[0;m=7a6612da version[0;m=13.12.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=56377 responseStatus[0;m=201 Created token[0;m=bYvSaVyN | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=181500 revision[0;m=7a6612da version[0;m=13.12.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=56377 responseStatus[0;m=201 Created token[0;m=bYvSaVyN | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=181524 revision[0;m=7a6612da version[0;m=13.12.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=56377 responseStatus[0;m=201 Created token[0;m=bYvSaVyN | |
| section_end:1631142670:upload_artifacts_on_success [0Ksection_start:1631142670:cleanup_file_variables [0K[0K[36;1mCleaning up file based variables[0;m | |
| [0;msection_end:1631142674:cleanup_file_variables [0K[32;1mJob succeeded | |
| [0;m |
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| [0KRunning with gitlab-runner 13.12.0 (7a6612da) | |
| [0;m[0K on BB5 map runner pnPo3yJy | |
| [0;msection_start:1631140439:resolve_secrets [0K[0K[36;1mResolving secrets[0;m | |
| [0;msection_end:1631140439:resolve_secrets [0Ksection_start:1631140439:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m | |
| [0;m[0KUsing Custom executor with driver BB5 PROD runner v0.0.3... | |
| [0;mBB5 PROD runner running on bbpv1.epfl.ch, version 13.12.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor115325618, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 16159, build ref fca92bfe02a7964cdd27baaaf5dee2c6abcbcbba, job ID 56375 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P16159 | |
| A slurm job will be created with name GL_J56375_PROD_P112_CP3_C3 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job eligible for phase1 and phase2, setting partition=prod_p2,prod_p1 | |
| Submitted batch job 2543316 | |
| job state: R | |
| section_end:1631140564:prepare_executor [0Ksection_start:1631140564:prepare_script [0K[0K[36;1mPreparing environment[0;m | |
| [0;mRunning on r5i1n20 via bbpv1.epfl.ch... | |
| section_end:1631140566:prepare_script [0Ksection_start:1631140566:get_sources [0K[0K[36;1mGetting source from Git repository[0;m | |
| [0;m[32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1631140568:get_sources [0Ksection_start:1631140568:restore_cache [0K[0K[36;1mRestoring cache[0;m | |
| [0;m[32;1mChecking cache for neuron-intel-4...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=342033 revision[0;m=7a6612da version[0;m=13.12.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1631140671:restore_cache [0Ksection_start:1631140671:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m | |
| [0;m[32;1mDownloading artifacts for build:coreneuron+nmodl:intel (56367)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=343654 revision[0;m=7a6612da version[0;m=13.12.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=56367 responseStatus[0;m=200 OK token[0;m=QZ42kBCj | |
| section_end:1631140672:download_artifacts [0Ksection_start:1631140672:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m | |
| [0;m[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426 | |
| [0;m[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_CONFIG}[0;m | |
| [32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56375/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56375/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56375/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:69 - $tempdir/$user/spack-stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 - ~/.spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 # - $spack/var/spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 # Directory in which to run tests and store test results. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 # Tests will be stored in directories named by date/time and package | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56375/spack-config/config.yaml:4 # name/hash. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/config.yaml:2 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56375/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/config.yaml:3 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:20 all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/config.yaml:5 root: $spack/opt/spack | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:33 build_jobs: 36 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:33 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:34 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:38 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:39 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:40 # Locations where different types of modules should be installed. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:76 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:85 tcl: $spack/share/spack/modules | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:91 lmod: $spack/share/spack/lmod | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:96 test_stage: ~/.spack/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:104 misc_cache: ~/.spack/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:110 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:115 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:120 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:128 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:137 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:149 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:163 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:170 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:178 ccache: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:184 concretizer: original | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:189 db_lock_timeout: 300 | |
| _builtin package_lock_timeout: !!null 'None' | |
| [32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = [email protected]:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = [email protected]: | |
| [32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m | |
| [32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m | |
| [32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m | |
| [32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m | |
| [32;1m$ echo New ref for ${SPACK_PACKAGE} is ${PACKAGE_REF}[0;m | |
| New ref for neuron is branch="master" | |
| [32;1m$ sed -i -e "/^\s*version\s*(\s*\(['\"]\)develop\1/ { s/,\s*\(commit\|tag\|branch\)=\([\"']\)[^\"']\+\2//g; s#)#, ${PACKAGE_REF})#; }" "${SPACK_PACKAGE_FILE}"[0;m | |
| [32;1m$ (cd $(dirname "${SPACK_PACKAGE_FILE}") && git diff "${SPACK_PACKAGE_FILE}")[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron@develop%intel+coreneuron+debug+tests~legacy-unit ^/lqyttqytclxdwwickak7uvjmb6a3au3g^/qbq5kwhq7demfuzvegvqnmeu4bhs4fvj | |
| [32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m | |
| ==> Warning: Missing a source id for neuron@develop | |
| ==> Warning: Missing a source id for nmodl@develop | |
| [32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be evyfylxt6tzfu4cdqoxauxxfc45stj6s | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable git gcc[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'evyfylxt6tzfu4cdqoxauxxfc45stj6s' | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron@develop%intel+coreneuron+debug~legacy-unit+tests | |
| [+] ^coreneuron@develop%[email protected]~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared~sympy~sympyopt+tests build_type=Debug arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected]+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556 visibility=hidden arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected]~ipo build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected]~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected]+cxx~debug~fortran+hl~java+mpi+pic+shared~szip~threadsafe api=none arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected]+optimize+pic+shared arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected]~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] ^nmodl@develop%[email protected]~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected]+libyaml arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected]~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] ^nmodl@develop%[email protected]~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected]+libyaml arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| Concretized | |
| -------------------------------- | |
| - evyfylx neuron@develop%[email protected]+binary+cmake~codechecks+coreneuron~cross-compile+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+multisend~profile+pysetup+python+rx3d+shared+tests build_type=RelWithDebInfo patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c arch=linux-rhel7-x86_64 | |
| - ymcya3l ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - mxqypex ^[email protected]%[email protected]~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64 | |
| [+] qbq5kwh ^coreneuron@develop%[email protected]~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared~sympy~sympyopt+tests build_type=Debug arch=linux-rhel7-x86_64 | |
| [^] pvpzjkl ^[email protected]%[email protected]+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556 visibility=hidden arch=linux-rhel7-x86_64 | |
| [+] fent2eu ^[email protected]%[email protected]~ipo build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] qagbv7u ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] x5el37s ^[email protected]%[email protected]~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] 2yojmmk ^[email protected]%[email protected]+cxx~debug~fortran+hl~java+mpi+pic+shared~szip~threadsafe api=none arch=linux-rhel7-x86_64 | |
| [^] wjshhip ^[email protected]%[email protected]+optimize+pic+shared arch=linux-rhel7-x86_64 | |
| [^] gwht6mm ^[email protected]%[email protected]~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] lqyttqy ^nmodl@develop%[email protected]~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] ubiktsv ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] yrbfda2 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] oe2c27i ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] icfhbit ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] xfgkmkd ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] oe2hrft ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] jo63uk3 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] kcyedyh ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] mikhjgq ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] hziuwhj ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] vpsqgcg ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] xgnwei3 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] gc3zsis ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] 557icag ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] za7jmvs ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] chpzzlm ^[email protected]%[email protected]+libyaml arch=linux-rhel7-x86_64 | |
| [^] 4237mpr ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] runxrmn ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] d6t5uhn ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] zas5d2a ^[email protected]%[email protected]~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| - 5mabxtb ^[email protected]%[email protected]+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64 | |
| [^] 6vrzcuv ^[email protected]%[email protected]+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel7-x86_64 | |
| [^] 6zbb66a ^[email protected]%[email protected]+shared arch=linux-rhel7-x86_64 | |
| [^] qlmq4dv ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] 6lr2umn ^[email protected]%[email protected]~python arch=linux-rhel7-x86_64 | |
| [^] 2qyzkdl ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] wzx3yy4 ^[email protected]%[email protected]~pic arch=linux-rhel7-x86_64 | |
| [^] nedfnju ^[email protected]%[email protected]~symlinks+termlib arch=linux-rhel7-x86_64 | |
| [^] d4pg4b2 ^[email protected]%[email protected] patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-x86_64 | |
| - nayogh4 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] i3t5fut ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] yg3vxts ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] l643i7a ^[email protected]%[email protected]+blas+lapack arch=linux-rhel7-x86_64 | |
| [^] nnxc4wm ^[email protected]%[email protected]~ilp64+shared threads=none arch=linux-rhel7-x86_64 | |
| [+] zniig3b ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] 2v5wfwa ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] kej56sd ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_JOB_CPUS_PER_NODE} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m | |
| ==> [email protected] : has external module in ['bison/3.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-ymcya3lbfxylkvsbomj2rbzbvecsldu2) | |
| ==> [email protected] : has external module in ['cmake/3.15.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-mxqypexiy6wmh4hpnmf4lbwwwqhxzscg) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k (external boost-1.73.0-pvpzjklfqyl55rerdxp63j32kpqkfr4z) | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/eigen-3.5a1-fent2e | |
| ==> [email protected] : has external module in ['hpe-mpi/2.22.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.22.hmpt-r52ypu (external hpe-mpi-2.22.hmpt-qagbv7uwlmxlmpab4m3ullbu7fxvkkpa) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/zlib-1.2.11-uubmvo (external zlib-1.2.11-wjshhipoj5m66agnke3p2dsjf32qntuf) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/spdlog-1.8.1-gwht6m | |
| ==> [email protected] : has external module in ['python/3.8.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-icfhbitmltpoj6w6vghr23ac5erldiic) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libyaml-0.2.4-4237mp | |
| ==> [email protected] : has external module in ['flex/2.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-5mabxtbvp5xw7gfjcac32iffw27sdssk) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bzip2-1.0.8-vatuhz (external bzip2-1.0.8-6zbb66a3uunskwyljh6sbgo36hbo7lj4) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libiconv-1.16-qlmq4d | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/pkgconf-1.7.3-2qyzkd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/xz-5.2.5-wzx3yy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ncurses-6.2-xvsnay (external ncurses-6.2-nedfnju3ptngli3lpj3occtiuoe2x6e3) | |
| [+] /usr (external tar-1.28-d4pg4b2ncvxd3p2ptw3j4os6jb5a7yvy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/intel-mkl-2018.3.222-xjuqsf (external intel-mkl-2018.3.222-nnxc4wmon4s26gfyily3n6tqa43p36rj) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/readline-8.0-f2v4sr (external readline-8.0-kej56sdf2cwo7ximwd5foo34wzwveqxc) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/reportinglib-2.5.6-zas5d2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/hdf5-1.10.7-2yojmm | |
| ==> [email protected] : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-nayogh4gvnag7ybxc2ud5dt4ckxod3cc) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-setuptools-50.3.2-xfgkmk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-attrs-20.3.0-kcyedy | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-py-1.8.0-557ica | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pyparsing-2.4.2-vpsqgc | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-mpmath-1.1.0-d6t5uh | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-wcwidth-0.1.7-za7jmv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pytz-2020.1-oe2c27 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pluggy-0.13.0-gc3zsi | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-six-1.16.0-xgnwei | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-more-itertools-8.7.0-mikhjg | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-markupsafe-1.1.1-oe2hrf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pyyaml-5.3.1-chpzzl | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libxml2-2.9.10-6lr2um | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libsonata-report-1.0.0.20210610-x5el37 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-mpi4py-3.0.3-yg3vxt | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-cython-0.29.21-i3t5fu | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-coverage-5.3-2v5wfw | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-sympy-1.4-runxrm | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-babel-2.7.0-yrbfda | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-packaging-19.2-hziuwh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/gettext-0.21-6vrzcu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-numpy-1.19.4-l643i7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-jinja2-2.10.3-ubikts | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pytest-5.3.4-jo63uk | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pytest-cov-2.8.1-zniig3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/nmodl-develop-lqyttq | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/coreneuron-develop-qbq5kw | |
| ==> Installing neuron-develop-evyfylxt6tzfu4cdqoxauxxfc45stj6s | |
| ==> No binary for neuron-develop-evyfylxt6tzfu4cdqoxauxxfc45stj6s found: installing from source | |
| ==> Warning: Missing a source id for nmodl@develop | |
| ==> Warning: Missing a source id for neuron@develop | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/neuron-develop-evyfyl | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then ccache -s; fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}^/${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.8.3 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-numpy/1.19.4 | |
| Autoloading py-mpi4py/3.0.3 | |
| Autoloading hpe-mpi/2.22.hmpt | |
| Autoloading py-h5py/3.1.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m | |
| Returning the number of failed builds, 0 | |
| [32;1m$ exit ${num_failures}[0;m | |
| section_end:1631140967:step_script [0Ksection_start:1631140967:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m | |
| [0;m[32;1mCreating cache neuron-intel-4...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=353678 revision[0;m=7a6612da version[0;m=13.12.0 | |
| ccache/: found 67405 matching files and directories[0;m | |
| Archive is up to date! [0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1631140970:archive_cache [0Ksection_start:1631140970:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m | |
| [0;m[32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=353724 revision[0;m=7a6612da version[0;m=13.12.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=56375 responseStatus[0;m=201 Created token[0;m=zQiEQ8kh | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=353747 revision[0;m=7a6612da version[0;m=13.12.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=56375 responseStatus[0;m=201 Created token[0;m=zQiEQ8kh | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=353770 revision[0;m=7a6612da version[0;m=13.12.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=56375 responseStatus[0;m=201 Created token[0;m=zQiEQ8kh | |
| section_end:1631140971:upload_artifacts_on_success [0Ksection_start:1631140971:cleanup_file_variables [0K[0K[36;1mCleaning up file based variables[0;m | |
| [0;msection_end:1631140974:cleanup_file_variables [0K[32;1mJob succeeded | |
| [0;m |
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| [0KRunning with gitlab-runner 13.12.0 (7a6612da) | |
| [0;m[0K on BB5 map runner pnPo3yJy | |
| [0;msection_start:1631138849:resolve_secrets [0K[0K[36;1mResolving secrets[0;m | |
| [0;msection_end:1631138849:resolve_secrets [0Ksection_start:1631138849:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m | |
| [0;m[0KUsing Custom executor with driver BB5 PROD runner v0.0.3... | |
| [0;mBB5 PROD runner running on bbpv1.epfl.ch, version 13.12.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor148754559, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 16159, build ref fca92bfe02a7964cdd27baaaf5dee2c6abcbcbba, job ID 56366 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P16159 | |
| A slurm job will be created with name GL_J56366_PROD_P112_CP1_C1 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job eligible for phase1 and phase2, setting partition=prod_p2,prod_p1 | |
| Submitted batch job 2541238 | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| section_end:1631139036:prepare_executor [0Ksection_start:1631139036:prepare_script [0K[0K[36;1mPreparing environment[0;m | |
| [0;mRunning on r4i3n0 via bbpv1.epfl.ch... | |
| section_end:1631139040:prepare_script [0Ksection_start:1631139040:get_sources [0K[0K[36;1mGetting source from Git repository[0;m | |
| [0;m[32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1631139044:get_sources [0Ksection_start:1631139044:restore_cache [0K[0K[36;1mRestoring cache[0;m | |
| [0;m[32;1mChecking cache for nmodl-nvhpc-4...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=88514 revision[0;m=7a6612da version[0;m=13.12.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1631139058:restore_cache [0Ksection_start:1631139058:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m | |
| [0;m[32;1mDownloading artifacts for spack_setup (56364)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=89366 revision[0;m=7a6612da version[0;m=13.12.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=56364 responseStatus[0;m=200 OK token[0;m=utnzg6fm | |
| section_end:1631139059:download_artifacts [0Ksection_start:1631139059:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m | |
| [0;m[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426 | |
| [0;m[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_CONFIG}[0;m | |
| [32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56366/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56366/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56366/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:69 - $tempdir/$user/spack-stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 - ~/.spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 # - $spack/var/spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 # Directory in which to run tests and store test results. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 # Tests will be stored in directories named by date/time and package | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56366/spack-config/config.yaml:4 # name/hash. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/config.yaml:2 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56366/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/config.yaml:3 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:20 all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/config.yaml:5 root: $spack/opt/spack | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:33 build_jobs: 36 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:33 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:34 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:38 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:39 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:40 # Locations where different types of modules should be installed. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:76 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:85 tcl: $spack/share/spack/modules | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:91 lmod: $spack/share/spack/lmod | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:96 test_stage: ~/.spack/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:104 misc_cache: ~/.spack/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:110 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:115 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:120 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:128 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:137 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:149 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:163 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:170 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:178 ccache: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:184 concretizer: original | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:189 db_lock_timeout: 300 | |
| _builtin package_lock_timeout: !!null 'None' | |
| [32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = [email protected]:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = [email protected]: | |
| [32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m | |
| [32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m | |
| [32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m | |
| [32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install nmodl@develop%nvhpc~legacy-unit ^bison%gcc^flex%gcc^py-jinja2%gcc^py-sympy%gcc^py-pyyaml%gcc | |
| [32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m | |
| ==> Warning: Missing a source id for nmodl@develop | |
| [32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be awi7vrm4eaiuzdafhedebwthgzxznx4j | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable git gcc[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'awi7vrm4eaiuzdafhedebwthgzxznx4j' | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - nmodl@develop%nvhpc~legacy-unit | |
| - ^bison%gcc | |
| - ^flex%gcc | |
| - ^py-jinja2%gcc | |
| - ^py-pyyaml%gcc | |
| - ^py-sympy%gcc | |
| Concretized | |
| -------------------------------- | |
| - awi7vrm nmodl@develop%[email protected]~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| - 2ifshpf ^[email protected]%[email protected] patches=ad81ef1b088459a396d908295afc3809f9a25076efaa459cdd2f21eabd1f4b16 arch=linux-rhel7-x86_64 | |
| - gluy7kg ^[email protected]%[email protected]~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64 | |
| - prwvb2t ^[email protected]%[email protected]+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64 | |
| - mddtpd5 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - afnqqnp ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - xpep3yw ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - ujf2qes ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] rsay7hd ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] v5gxu5s ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| - 5pew2nu ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] 6leiazm ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] 373m5vr ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] hgzmzzz ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] 2p3niph ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] 444mrrp ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ux4mwzh ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] tbbefeg ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] zbwtznm ^[email protected]%[email protected]+toml arch=linux-rhel7-x86_64 | |
| [^] k3yba4y ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] qywkw4y ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] rdab26o ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - dszppxf ^[email protected]%[email protected]+libyaml arch=linux-rhel7-x86_64 | |
| [^] ggibzjm ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - lhwntcl ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - l3syz4z ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_JOB_CPUS_PER_NODE} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m | |
| ==> [email protected] : has external module in ['bison/3.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-2ifshpf6x23hf7ccztxnrrqdx4mxt3rj) | |
| ==> [email protected] : has external module in ['cmake/3.15.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-gluy7kgf2wgh5bfrenva7x4mtnzhr6r4) | |
| ==> [email protected] : has external module in ['flex/2.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-prwvb2t3p3bo5eivmcrvx2eyffvcwfqy) | |
| ==> [email protected] : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-mddtpd5kgds34dklkfm2prewsfy6becf) | |
| ==> [email protected] : has external module in ['python/3.8.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-v5gxu5slpix24wzbfiyzo52rwso5gsaa) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/libyaml-0.2.4-ggibzj | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-six-1.16.0-ux4mwz | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-setuptools-50.3.2-rsay7h | |
| ==> Installing py-mpmath-1.1.0-l3syz4zlt7jlkpe56wtyhdvsi5e5h2nj | |
| ==> No binary for py-mpmath-1.1.0-l3syz4zlt7jlkpe56wtyhdvsi5e5h2nj found: installing from source | |
| ==> Warning: Missing a source id for nmodl@develop | |
| ==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/fc/fc17abe05fbab3382b61a123c398508183406fa132e0223874578e20946499f6.tar.gz | |
| ==> py-mpmath: Executing phase: 'build' | |
| ==> py-mpmath: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-mpmath-1.1.0-l3syz4 | |
| ==> Installing py-pyyaml-5.3.1-dszppxfqapggdokpec7viw45xx62rjaf | |
| ==> No binary for py-pyyaml-5.3.1-dszppxfqapggdokpec7viw45xx62rjaf found: installing from source | |
| ==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/b8/b8eac752c5e14d3eca0e6dd9199cd627518cb5ec06add0de9d32baeee6fe645d.tar.gz | |
| ==> py-pyyaml: Executing phase: 'build_ext' | |
| ==> py-pyyaml: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-pyyaml-5.3.1-dszppx | |
| ==> Installing py-markupsafe-1.1.1-5pew2nu7kniwhdjc57ouymcgz3koo2qo | |
| ==> No binary for py-markupsafe-1.1.1-5pew2nu7kniwhdjc57ouymcgz3koo2qo found: installing from source | |
| ==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/29/29872e92839765e546828bb7754a68c418d927cd064fd4708fab9fe9c8bb116b.tar.gz | |
| ==> py-markupsafe: Executing phase: 'build' | |
| ==> py-markupsafe: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-markupsafe-1.1.1-5pew2n | |
| ==> Installing py-pytz-2020.1-ujf2qesoetsxrgrnfr4i32d7aqx6ahnj | |
| ==> No binary for py-pytz-2020.1-ujf2qesoetsxrgrnfr4i32d7aqx6ahnj found: installing from source | |
| ==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/c3/c35965d010ce31b23eeb663ed3cc8c906275d6be1a34393a1d73a41febf4a048.tar.gz | |
| ==> py-pytz: Executing phase: 'build' | |
| ==> py-pytz: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-pytz-2020.1-ujf2qe | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-pyparsing-2.4.2-444mrr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-more-itertools-8.7.0-hgzmzz | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-wcwidth-0.1.7-rdab26 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-attrs-20.3.0-373m5v | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-toml-0.10.0-k3yba4 | |
| ==> Installing py-sympy-1.4-lhwntcljkmu6eptc4dzn2ibspkjvhvjw | |
| ==> No binary for py-sympy-1.4-lhwntcljkmu6eptc4dzn2ibspkjvhvjw found: installing from source | |
| ==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/71/71a11e5686ae7ab6cb8feb5bd2651ef4482f8fd43a7c27e645a165e4353b23e1.tar.gz | |
| ==> py-sympy: Executing phase: 'build' | |
| ==> py-sympy: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-sympy-1.4-lhwntc | |
| ==> Installing py-babel-2.7.0-xpep3ywshdt2sumfvwl7xwr4iyharkla | |
| ==> No binary for py-babel-2.7.0-xpep3ywshdt2sumfvwl7xwr4iyharkla found: installing from source | |
| ==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/e8/e86135ae101e31e2c8ec20a4e0c5220f4eed12487d5cf3f78be7e98d3a57fc28.tar.gz | |
| ==> py-babel: Executing phase: 'build' | |
| ==> py-babel: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-babel-2.7.0-xpep3y | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-packaging-19.2-2p3nip | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-setuptools-scm-4.1.2-zbwtzn | |
| ==> Installing py-jinja2-2.10.3-afnqqnpla6cdujgmlak32wyouz3gljv2 | |
| ==> No binary for py-jinja2-2.10.3-afnqqnpla6cdujgmlak32wyouz3gljv2 found: installing from source | |
| ==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/9f/9fe95f19286cfefaa917656583d020be14e7859c6b0252588391e47db34527de.tar.gz | |
| ==> py-jinja2: Executing phase: 'build' | |
| ==> py-jinja2: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-jinja2-2.10.3-afnqqn | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-py-1.8.0-qywkw4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-pluggy-0.13.0-tbbefe | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-pytest-5.3.4-6leiaz | |
| ==> Installing nmodl-develop-awi7vrm4eaiuzdafhedebwthgzxznx4j | |
| ==> No binary for nmodl-develop-awi7vrm4eaiuzdafhedebwthgzxznx4j found: installing from source | |
| ==> nmodl: Executing phase: 'cmake' | |
| ==> nmodl: Executing phase: 'build' | |
| ==> nmodl: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.2/nmodl-develop-awi7vr | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then ccache -s; fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}^/${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.8.3 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-numpy/1.19.4 | |
| Autoloading py-mpi4py/3.0.3 | |
| Autoloading hpe-mpi/2.22.hmpt | |
| Autoloading py-h5py/3.1.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m | |
| Returning the number of failed builds, 0 | |
| [32;1m$ exit ${num_failures}[0;m | |
| section_end:1631141551:step_script [0Ksection_start:1631141551:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m | |
| [0;m[32;1mCreating cache nmodl-nvhpc-4...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=105484 revision[0;m=7a6612da version[0;m=13.12.0 | |
| ccache/: found 2748 matching files and directories[0;m | |
| Archive is up to date! [0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1631141553:archive_cache [0Ksection_start:1631141553:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m | |
| [0;m[32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=105529 revision[0;m=7a6612da version[0;m=13.12.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=56366 responseStatus[0;m=201 Created token[0;m=x6ZrZman | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=105551 revision[0;m=7a6612da version[0;m=13.12.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=56366 responseStatus[0;m=201 Created token[0;m=x6ZrZman | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=105573 revision[0;m=7a6612da version[0;m=13.12.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=56366 responseStatus[0;m=201 Created token[0;m=x6ZrZman | |
| section_end:1631141556:upload_artifacts_on_success [0Ksection_start:1631141556:cleanup_file_variables [0K[0K[36;1mCleaning up file based variables[0;m | |
| [0;msection_end:1631141558:cleanup_file_variables [0K[32;1mJob succeeded | |
| [0;m |
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| [0KRunning with gitlab-runner 13.12.0 (7a6612da) | |
| [0;m[0K on BB5 map runner pnPo3yJy | |
| [0;msection_start:1631138849:resolve_secrets [0K[0K[36;1mResolving secrets[0;m | |
| [0;msection_end:1631138849:resolve_secrets [0Ksection_start:1631138849:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m | |
| [0;m[0KUsing Custom executor with driver BB5 PROD runner v0.0.3... | |
| [0;mBB5 PROD runner running on bbpv1.epfl.ch, version 13.12.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor335542277, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 16159, build ref fca92bfe02a7964cdd27baaaf5dee2c6abcbcbba, job ID 56365 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P16159 | |
| A slurm job will be created with name GL_J56365_PROD_P112_CP0_C0 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job eligible for phase1 and phase2, setting partition=prod_p2,prod_p1 | |
| Submitted batch job 2541236 | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| section_end:1631139036:prepare_executor [0Ksection_start:1631139036:prepare_script [0K[0K[36;1mPreparing environment[0;m | |
| [0;mRunning on r4i3n0 via bbpv1.epfl.ch... | |
| section_end:1631139040:prepare_script [0Ksection_start:1631139040:get_sources [0K[0K[36;1mGetting source from Git repository[0;m | |
| [0;m[32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1631139044:get_sources [0Ksection_start:1631139044:restore_cache [0K[0K[36;1mRestoring cache[0;m | |
| [0;m[32;1mChecking cache for nmodl-intel-4...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=88576 revision[0;m=7a6612da version[0;m=13.12.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1631139063:restore_cache [0Ksection_start:1631139063:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m | |
| [0;m[32;1mDownloading artifacts for spack_setup (56364)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=90352 revision[0;m=7a6612da version[0;m=13.12.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=56364 responseStatus[0;m=200 OK token[0;m=utnzg6fm | |
| section_end:1631139063:download_artifacts [0Ksection_start:1631139063:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m | |
| [0;m[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426 | |
| [0;m[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_CONFIG}[0;m | |
| [32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56365/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56365/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56365/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:69 - $tempdir/$user/spack-stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 - ~/.spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 # - $spack/var/spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 # Directory in which to run tests and store test results. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:70 # Tests will be stored in directories named by date/time and package | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56365/spack-config/config.yaml:4 # name/hash. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/config.yaml:2 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56365/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/config.yaml:3 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:20 all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/config.yaml:5 root: $spack/opt/spack | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:33 build_jobs: 36 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:33 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:34 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:38 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:39 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:40 # Locations where different types of modules should be installed. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:76 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:85 tcl: $spack/share/spack/modules | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:91 lmod: $spack/share/spack/lmod | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:96 test_stage: ~/.spack/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:104 misc_cache: ~/.spack/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:110 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:115 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:120 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:128 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:137 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:149 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:163 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:170 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:178 ccache: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:184 concretizer: original | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/etc/spack/defaults/config.yaml:189 db_lock_timeout: 300 | |
| _builtin package_lock_timeout: !!null 'None' | |
| [32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = [email protected]:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = [email protected]: | |
| [32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m | |
| [32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m | |
| [32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m | |
| [32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install nmodl@develop%intel~legacy-unit | |
| [32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m | |
| ==> Warning: Missing a source id for nmodl@develop | |
| [32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be lqyttqytclxdwwickak7uvjmb6a3au3g | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable git gcc[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'lqyttqytclxdwwickak7uvjmb6a3au3g' | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - nmodl@develop%intel~legacy-unit | |
| Concretized | |
| -------------------------------- | |
| - lqyttqy nmodl@develop%[email protected]~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| - ymcya3l ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - mxqypex ^[email protected]%[email protected]~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64 | |
| - 5mabxtb ^[email protected]%[email protected]+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64 | |
| - nayogh4 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - ubiktsv ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - yrbfda2 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] oe2c27i ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] xfgkmkd ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] icfhbit ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| - oe2hrft ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - jo63uk3 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] kcyedyh ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - mikhjgq ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - hziuwhj ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] vpsqgcg ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] xgnwei3 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - gc3zsis ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ze65gmo ^[email protected]%[email protected]+toml arch=linux-rhel7-x86_64 | |
| [^] p553wsa ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - 557icag ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - za7jmvs ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] chpzzlm ^[email protected]%[email protected]+libyaml arch=linux-rhel7-x86_64 | |
| [^] 4237mpr ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - runxrmn ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - d6t5uhn ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_JOB_CPUS_PER_NODE} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m | |
| ==> [email protected] : has external module in ['bison/3.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-ymcya3lbfxylkvsbomj2rbzbvecsldu2) | |
| ==> [email protected] : has external module in ['cmake/3.15.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-mxqypexiy6wmh4hpnmf4lbwwwqhxzscg) | |
| ==> [email protected] : has external module in ['flex/2.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-5mabxtbvp5xw7gfjcac32iffw27sdssk) | |
| ==> [email protected] : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-nayogh4gvnag7ybxc2ud5dt4ckxod3cc) | |
| ==> [email protected] : has external module in ['python/3.8.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-icfhbitmltpoj6w6vghr23ac5erldiic) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libyaml-0.2.4-4237mp | |
| ==> Installing py-mpmath-1.1.0-d6t5uhnfv6vz76zvbq6dxzezju47q4b2 | |
| ==> No binary for py-mpmath-1.1.0-d6t5uhnfv6vz76zvbq6dxzezju47q4b2 found: installing from source | |
| ==> Warning: Missing a source id for nmodl@develop | |
| ==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/fc/fc17abe05fbab3382b61a123c398508183406fa132e0223874578e20946499f6.tar.gz | |
| ==> py-mpmath: Executing phase: 'build' | |
| ==> py-mpmath: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-mpmath-1.1.0-d6t5uh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-six-1.16.0-xgnwei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-setuptools-50.3.2-xfgkmk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pyyaml-5.3.1-chpzzl | |
| ==> Installing py-sympy-1.4-runxrmnc6ccdqey2sq7njyz4u4i2x7xw | |
| ==> No binary for py-sympy-1.4-runxrmnc6ccdqey2sq7njyz4u4i2x7xw found: installing from source | |
| ==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/71/71a11e5686ae7ab6cb8feb5bd2651ef4482f8fd43a7c27e645a165e4353b23e1.tar.gz | |
| ==> py-sympy: Executing phase: 'build' | |
| ==> py-sympy: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-sympy-1.4-runxrm | |
| ==> Installing py-more-itertools-8.7.0-mikhjgqoad5w4yqy27gs5e6resjbaofw | |
| ==> No binary for py-more-itertools-8.7.0-mikhjgqoad5w4yqy27gs5e6resjbaofw found: installing from source | |
| ==> Fetching https://pypi.io/packages/source/m/more-itertools/more-itertools-8.7.0.tar.gz | |
| ==> py-more-itertools: Executing phase: 'build' | |
| ==> py-more-itertools: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-more-itertools-8.7.0-mikhjg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pytz-2020.1-oe2c27 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-toml-0.10.0-p553ws | |
| ==> Installing py-markupsafe-1.1.1-oe2hrfthehpamljikolcjblr7mt52724 | |
| ==> No binary for py-markupsafe-1.1.1-oe2hrfthehpamljikolcjblr7mt52724 found: installing from source | |
| ==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/29/29872e92839765e546828bb7754a68c418d927cd064fd4708fab9fe9c8bb116b.tar.gz | |
| ==> py-markupsafe: Executing phase: 'build' | |
| ==> py-markupsafe: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-markupsafe-1.1.1-oe2hrf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pyparsing-2.4.2-vpsqgc | |
| ==> Installing py-wcwidth-0.1.7-za7jmvshfdsnmghmumjvxfinateuen3k | |
| ==> No binary for py-wcwidth-0.1.7-za7jmvshfdsnmghmumjvxfinateuen3k found: installing from source | |
| ==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/3d/3df37372226d6e63e1b1e1eda15c594bca98a22d33a23832a90998faa96bc65e.tar.gz | |
| ==> py-wcwidth: Executing phase: 'build' | |
| ==> py-wcwidth: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-wcwidth-0.1.7-za7jmv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-attrs-20.3.0-kcyedy | |
| ==> Installing py-babel-2.7.0-yrbfda2telivet3ruvwscmtafc7zoys7 | |
| ==> No binary for py-babel-2.7.0-yrbfda2telivet3ruvwscmtafc7zoys7 found: installing from source | |
| ==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/e8/e86135ae101e31e2c8ec20a4e0c5220f4eed12487d5cf3f78be7e98d3a57fc28.tar.gz | |
| ==> py-babel: Executing phase: 'build' | |
| ==> py-babel: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-babel-2.7.0-yrbfda | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-setuptools-scm-4.1.2-ze65gm | |
| ==> Installing py-packaging-19.2-hziuwhjrhckeozwekkhwxabvm4onfilt | |
| ==> No binary for py-packaging-19.2-hziuwhjrhckeozwekkhwxabvm4onfilt found: installing from source | |
| ==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/28/28b924174df7a2fa32c1953825ff29c61e2f5e082343165438812f00d3a7fc47.tar.gz | |
| ==> py-packaging: Executing phase: 'build' | |
| ==> py-packaging: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-packaging-19.2-hziuwh | |
| ==> Installing py-jinja2-2.10.3-ubiktsvw22gxnvhwzsoloqliz7czyhab | |
| ==> No binary for py-jinja2-2.10.3-ubiktsvw22gxnvhwzsoloqliz7czyhab found: installing from source | |
| ==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/9f/9fe95f19286cfefaa917656583d020be14e7859c6b0252588391e47db34527de.tar.gz | |
| ==> py-jinja2: Executing phase: 'build' | |
| ==> py-jinja2: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-jinja2-2.10.3-ubikts | |
| ==> Installing py-py-1.8.0-557icag4kia4rysswd2uxdettfkewclq | |
| ==> No binary for py-py-1.8.0-557icag4kia4rysswd2uxdettfkewclq found: installing from source | |
| ==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/dc/dc639b046a6e2cff5bbe40194ad65936d6ba360b52b3c3fe1d08a82dd50b5e53.tar.gz | |
| ==> py-py: Executing phase: 'build' | |
| ==> py-py: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-py-1.8.0-557ica | |
| ==> Installing py-pluggy-0.13.0-gc3zsisoxxbiopoa44i536m232c65zb4 | |
| ==> No binary for py-pluggy-0.13.0-gc3zsisoxxbiopoa44i536m232c65zb4 found: installing from source | |
| ==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/fa/fa5fa1622fa6dd5c030e9cad086fa19ef6a0cf6d7a2d12318e10cb49d6d68f34.tar.gz | |
| ==> py-pluggy: Executing phase: 'build' | |
| ==> py-pluggy: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pluggy-0.13.0-gc3zsi | |
| ==> Installing py-pytest-5.3.4-jo63uk3qcowoxe2ogccodpfmsdr2r557 | |
| ==> No binary for py-pytest-5.3.4-jo63uk3qcowoxe2ogccodpfmsdr2r557 found: installing from source | |
| ==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/1d/1d122e8be54d1a709e56f82e2d85dcba3018313d64647f38a91aec88c239b600.tar.gz | |
| ==> py-pytest: Executing phase: 'build' | |
| ==> py-pytest: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pytest-5.3.4-jo63uk | |
| ==> Installing nmodl-develop-lqyttqytclxdwwickak7uvjmb6a3au3g | |
| ==> No binary for nmodl-develop-lqyttqytclxdwwickak7uvjmb6a3au3g found: installing from source | |
| ==> nmodl: Executing phase: 'cmake' | |
| ==> nmodl: Executing phase: 'build' | |
| ==> nmodl: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/nmodl-develop-lqyttq | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then ccache -s; fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}^/${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.8.3 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-numpy/1.19.4 | |
| Autoloading py-mpi4py/3.0.3 | |
| Autoloading hpe-mpi/2.22.hmpt | |
| Autoloading py-h5py/3.1.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m | |
| Returning the number of failed builds, 0 | |
| [32;1m$ exit ${num_failures}[0;m | |
| section_end:1631140183:step_script [0Ksection_start:1631140183:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m | |
| [0;m[32;1mCreating cache nmodl-intel-4...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=102292 revision[0;m=7a6612da version[0;m=13.12.0 | |
| ccache/: found 2862 matching files and directories[0;m | |
| Archive is up to date! [0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1631140186:archive_cache [0Ksection_start:1631140186:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m | |
| [0;m[32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=102338 revision[0;m=7a6612da version[0;m=13.12.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=56365 responseStatus[0;m=201 Created token[0;m=ixWEWDxB | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=102358 revision[0;m=7a6612da version[0;m=13.12.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=56365 responseStatus[0;m=201 Created token[0;m=ixWEWDxB | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=102381 revision[0;m=7a6612da version[0;m=13.12.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=56365 responseStatus[0;m=201 Created token[0;m=ixWEWDxB | |
| section_end:1631140188:upload_artifacts_on_success [0Ksection_start:1631140188:cleanup_file_variables [0K[0K[36;1mCleaning up file based variables[0;m | |
| [0;msection_end:1631140189:cleanup_file_variables [0K[32;1mJob succeeded | |
| [0;m |
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| ! |
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| [0KRunning with gitlab-runner 13.12.0 (7a6612da) | |
| [0;m[0K on BB5 map runner pnPo3yJy | |
| [0;msection_start:1631138813:resolve_secrets [0K[0K[36;1mResolving secrets[0;m | |
| [0;msection_end:1631138813:resolve_secrets [0Ksection_start:1631138813:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m | |
| [0;m[0KUsing Custom executor with driver BB5 PROD runner v0.0.3... | |
| [0;mBB5 PROD runner running on bbpv1.epfl.ch, version 13.12.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor159567608, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 16159, build ref fca92bfe02a7964cdd27baaaf5dee2c6abcbcbba, job ID 56364 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P16159 | |
| A slurm job will be created with name GL_J56364_PROD_P112_CP0_C0 | |
| Job parameters: memory=512M, cpus_per_task=1, duration=10:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job eligible for phase1 and phase2, setting partition=prod_p2,prod_p1 | |
| Submitted batch job 2541234 | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| section_end:1631138817:prepare_executor [0Ksection_start:1631138817:prepare_script [0K[0K[36;1mPreparing environment[0;m | |
| [0;mRunning on r2i2n15 via bbpv1.epfl.ch... | |
| section_end:1631138819:prepare_script [0Ksection_start:1631138819:get_sources [0K[0K[36;1mGetting source from Git repository[0;m | |
| [0;m[32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1631138821:get_sources [0Ksection_start:1631138821:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m | |
| [0;m[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426 | |
| [0;m[32;1m$ touch spack_clone_variables.env[0;m | |
| [32;1m$ if [[ "${PARSE_GITHUB_PR_DESCRIPTIONS}" == "true" && "${CI_PIPELINE_SOURCE}" == "external_pull_request_event" ]]; then[0;m | |
| [32;1m$ cat > parse_description.py << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ cat parse_description.py[0;m | |
| from __future__ import print_function | |
| import os | |
| import re | |
| import requests | |
| pr_info = requests.get("https://api.github.com/repos/{}/pulls/{}".format( | |
| os.environ['CI_EXTERNAL_PULL_REQUEST_TARGET_REPOSITORY'], | |
| os.environ['CI_EXTERNAL_PULL_REQUEST_IID']), | |
| headers={'Accept': 'application/vnd.github.v3+json'}) | |
| pr_body = pr_info.json()["body"] | |
| # match something like NEURON_BRANCH=foo/bar | |
| pat = re.compile('^([A-Z0-9_]+)_([A-Z]+)=([A-Z0-9\-\_\/]+)$', re.IGNORECASE) | |
| def parse_term(m): | |
| ref_type = m.group(2).lower() | |
| if ref_type not in {'branch', 'tag', 'ref'}: return | |
| print('SPACK_PACKAGE_REF_' + m.group(1).lower() + '=' + ref_type + '="' + m.group(3) + '"') | |
| for pr_body_line in pr_body.splitlines(): | |
| if not pr_body_line.startswith('CI_BRANCHES:'): continue | |
| for config_term in pr_body_line[12:].split(','): | |
| pat.sub(parse_term, config_term) | |
| [32;1m$ python parse_description.py > spack_clone_variables.env[0;m | |
| [32;1m$ cat spack_clone_variables.env[0;m | |
| SPACK_PACKAGE_REF_neuron=branch="master" | |
| [32;1m$ fi[0;m | |
| [32;1m$ echo Using ${PWD} as a working directory common to the whole pipeline...[0;m | |
| Using /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56364 as a working directory common to the whole pipeline... | |
| [32;1m$ SPACK_BRANCH_PARSED=$(sed -n -e "s/^SPACK_PACKAGE_REF_spack=branch=\(['\"]\)\([^\1]\+\)\1/\2/p" spack_clone_variables.env)[0;m | |
| [32;1m$ SPACK_BRANCH=${SPACK_BRANCH_PARSED:-$SPACK_BRANCH}[0;m | |
| [32;1m$ echo Checking out the ${SPACK_BRANCH} of Spack...[0;m | |
| Checking out the develop of Spack... | |
| [32;1m$ git clone --depth 1 --single-branch --branch ${SPACK_BRANCH} https://github.com/BlueBrain/spack.git spack[0;m | |
| Cloning into 'spack'... | |
| Checking out files: 7% (601/7667) Checking out files: 8% (614/7667) Checking out files: 9% (691/7667) Checking out files: 10% (767/7667) Checking out files: 11% (844/7667) Checking out files: 12% (921/7667) Checking out files: 13% (997/7667) Checking out files: 14% (1074/7667) Checking out files: 14% (1100/7667) Checking out files: 15% (1151/7667) Checking out files: 16% (1227/7667) Checking out files: 17% (1304/7667) Checking out files: 18% (1381/7667) Checking out files: 19% (1457/7667) Checking out files: 20% (1534/7667) Checking out files: 21% (1611/7667) Checking out files: 21% (1631/7667) Checking out files: 22% (1687/7667) Checking out files: 23% (1764/7667) Checking out files: 24% (1841/7667) Checking out files: 25% (1917/7667) Checking out files: 26% (1994/7667) Checking out files: 27% (2071/7667) Checking out files: 28% (2147/7667) Checking out files: 29% (2224/7667) Checking out files: 29% (2281/7667) Checking out files: 30% (2301/7667) Checking out files: 31% (2377/7667) Checking out files: 32% (2454/7667) Checking out files: 33% (2531/7667) Checking out files: 34% (2607/7667) Checking out files: 35% (2684/7667) Checking out files: 36% (2761/7667) Checking out files: 37% (2837/7667) Checking out files: 38% (2914/7667) Checking out files: 39% (2991/7667) Checking out files: 40% (3067/7667) Checking out files: 41% (3144/7667) Checking out files: 42% (3221/7667) Checking out files: 42% (3248/7667) Checking out files: 43% (3297/7667) Checking out files: 44% (3374/7667) Checking out files: 45% (3451/7667) Checking out files: 46% (3527/7667) Checking out files: 47% (3604/7667) Checking out files: 48% (3681/7667) Checking out files: 49% (3757/7667) Checking out files: 50% (3834/7667) Checking out files: 51% (3911/7667) Checking out files: 52% (3987/7667) Checking out files: 53% (4064/7667) Checking out files: 54% (4141/7667) Checking out files: 55% (4217/7667) Checking out files: 55% (4255/7667) Checking out files: 56% (4294/7667) Checking out files: 57% (4371/7667) Checking out files: 58% (4447/7667) Checking out files: 59% (4524/7667) Checking out files: 60% (4601/7667) Checking out files: 61% (4677/7667) Checking out files: 61% (4712/7667) Checking out files: 62% (4754/7667) Checking out files: 63% (4831/7667) Checking out files: 64% (4907/7667) Checking out files: 65% (4984/7667) Checking out files: 66% (5061/7667) Checking out files: 67% (5137/7667) Checking out files: 68% (5214/7667) Checking out files: 69% (5291/7667) Checking out files: 70% (5367/7667) Checking out files: 71% (5444/7667) Checking out files: 72% (5521/7667) Checking out files: 73% (5597/7667) Checking out files: 74% (5674/7667) Checking out files: 75% (5751/7667) Checking out files: 76% (5827/7667) Checking out files: 76% (5889/7667) Checking out files: 77% (5904/7667) Checking out files: 78% (5981/7667) Checking out files: 79% (6057/7667) Checking out files: 80% (6134/7667) Checking out files: 81% (6211/7667) Checking out files: 82% (6287/7667) Checking out files: 83% (6364/7667) Checking out files: 84% (6441/7667) Checking out files: 85% (6517/7667) Checking out files: 86% (6594/7667) Checking out files: 87% (6671/7667) Checking out files: 88% (6747/7667) Checking out files: 89% (6824/7667) Checking out files: 90% (6901/7667) Checking out files: 91% (6977/7667) Checking out files: 92% (7054/7667) Checking out files: 93% (7131/7667) Checking out files: 94% (7207/7667) Checking out files: 95% (7284/7667) Checking out files: 96% (7361/7667) Checking out files: 96% (7384/7667) Checking out files: 97% (7437/7667) Checking out files: 98% (7514/7667) Checking out files: 99% (7591/7667) Checking out files: 100% (7667/7667) Checking out files: 100% (7667/7667), done. | |
| [32;1m$ cp /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/config/*.yaml spack/etc/spack[0;m | |
| [32;1m$ SPACK_ROOT=${PWD}/spack[0;m | |
| [32;1m$ echo "SPACK_ROOT=${SPACK_ROOT}" >> spack_clone_variables.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ if [[ "${CI_PIPELINE_SOURCE}" == "pipeline" ]]; then[0;m | |
| section_end:1631138835:step_script [0Ksection_start:1631138835:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m | |
| [0;m[32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=91025 revision[0;m=7a6612da version[0;m=13.12.0 | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=56364 responseStatus[0;m=201 Created token[0;m=utnzg6fm | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=91039 revision[0;m=7a6612da version[0;m=13.12.0 | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=56364 responseStatus[0;m=201 Created token[0;m=utnzg6fm | |
| section_end:1631138838:upload_artifacts_on_success [0Ksection_start:1631138838:cleanup_file_variables [0K[0K[36;1mCleaning up file based variables[0;m | |
| [0;msection_end:1631138841:cleanup_file_variables [0K[32;1mJob succeeded | |
| [0;m |
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Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 13.12.0 (7a6612da) | |
| [0;m[0K on BB5 map runner pnPo3yJy | |
| [0;msection_start:1631139416:resolve_secrets [0K[0K[36;1mResolving secrets[0;m | |
| [0;msection_end:1631139416:resolve_secrets [0Ksection_start:1631139416:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m | |
| [0;m[0KUsing Custom executor with driver BB5 PROD runner v0.0.3... | |
| [0;mBB5 PROD runner running on bbpv1.epfl.ch, version 13.12.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor267223184, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 16159, build ref fca92bfe02a7964cdd27baaaf5dee2c6abcbcbba, job ID 56374 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P16159 | |
| A slurm job will be created with name GL_J56374_PROD_P112_CP2_C2 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job eligible for phase1 and phase2, setting partition=prod_p2,prod_p1 | |
| Submitted batch job 2542174 | |
| job state: R | |
| section_end:1631139484:prepare_executor [0Ksection_start:1631139484:prepare_script [0K[0K[36;1mPreparing environment[0;m | |
| [0;mRunning on r2i3n0 via bbpv1.epfl.ch... | |
| section_end:1631139485:prepare_script [0Ksection_start:1631139485:get_sources [0K[0K[36;1mGetting source from Git repository[0;m | |
| [0;m[32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1631139487:get_sources [0Ksection_start:1631139487:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m | |
| [0;m[32;1mDownloading artifacts for build:coreneuron:gpu (56370)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=169522 revision[0;m=7a6612da version[0;m=13.12.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=56370 responseStatus[0;m=200 OK token[0;m=ujsQ7_ae | |
| section_end:1631139488:download_artifacts [0Ksection_start:1631139488:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m | |
| [0;m[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426 | |
| [0;m[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env /${SPACK_INSTALLED_HASH} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r4i3n0 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20210908-2218 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56370/spack-build/spack-stage-coreneuron-develop-ekzdtgq26p6y5mzmpphbjqbifw32enfk/spack-build-ekzdtgq | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| Start 3: alignment_test | |
| Start 4: queuing_test | |
| Start 5: lfp_test | |
| Start 6: ring_TEST | |
| 1/18 Test #1: cmd_interface_test ..................... Passed 1.42 sec | |
| 2/18 Test #3: alignment_test ......................... Passed 1.51 sec | |
| 3/18 Test #2: interleave_info_constructor_test ....... Passed 1.61 sec | |
| Start 7: ring_binqueue_TEST | |
| Start 8: ring_multisend_TEST | |
| 4/18 Test #4: queuing_test ........................... Passed 1.61 sec | |
| 5/18 Test #5: lfp_test ............................... Passed 1.61 sec | |
| Start 9: ring_spike_buffer_TEST | |
| 6/18 Test #6: ring_TEST .............................. Passed 2.41 sec | |
| Start 10: ring_permute1_TEST | |
| 7/18 Test #9: ring_spike_buffer_TEST ................. Passed 14.03 sec | |
| 8/18 Test #7: ring_binqueue_TEST ..................... Passed 14.36 sec | |
| 9/18 Test #10: ring_permute1_TEST ..................... Passed 13.35 sec | |
| Start 11: ring_permute2_TEST | |
| Start 12: ring_gap_TEST | |
| Start 13: ring_gap_binqueue_TEST | |
| 10/18 Test #8: ring_multisend_TEST .................... Passed 14.37 sec | |
| Start 14: ring_gap_multisend_TEST | |
| 11/18 Test #11: ring_permute2_TEST ..................... Passed 12.20 sec | |
| Start 15: ring_gap_permute1_TEST | |
| 12/18 Test #13: ring_gap_binqueue_TEST ................. Passed 19.48 sec | |
| Start 16: ring_gap_permute2_TEST | |
| 13/18 Test #14: ring_gap_multisend_TEST ................ Passed 20.48 sec | |
| 14/18 Test #12: ring_gap_TEST .......................... Passed 20.81 sec | |
| Start 17: ring_permute2_cudaInterface_TEST | |
| Start 18: ring_gap_permute2_cudaInterface_TEST | |
| 15/18 Test #15: ring_gap_permute1_TEST ................. Passed 8.82 sec | |
| 16/18 Test #16: ring_gap_permute2_TEST ................. Passed 3.74 sec | |
| 17/18 Test #17: ring_permute2_cudaInterface_TEST ....... Passed 5.71 sec | |
| 18/18 Test #18: ring_gap_permute2_cudaInterface_TEST ... Passed 6.26 sec | |
| 100% tests passed, 0 tests failed out of 18 | |
| Total Test time (real) = 43.19 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.8.3 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1631139546:step_script [0Ksection_start:1631139546:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m | |
| [0;m[32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=170951 revision[0;m=7a6612da version[0;m=13.12.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=56374 responseStatus[0;m=201 Created token[0;m=beCGzyBm | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=170977 revision[0;m=7a6612da version[0;m=13.12.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=56374 responseStatus[0;m=201 Created token[0;m=beCGzyBm | |
| section_end:1631139553:upload_artifacts_on_success [0Ksection_start:1631139553:cleanup_file_variables [0K[0K[36;1mCleaning up file based variables[0;m | |
| [0;msection_end:1631139556:cleanup_file_variables [0K[32;1mJob succeeded | |
| [0;m |
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| [0KRunning with gitlab-runner 13.12.0 (7a6612da) | |
| [0;m[0K on BB5 map runner pnPo3yJy | |
| [0;msection_start:1631139230:resolve_secrets [0K[0K[36;1mResolving secrets[0;m | |
| [0;msection_end:1631139230:resolve_secrets [0Ksection_start:1631139230:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m | |
| [0;m[0KUsing Custom executor with driver BB5 PROD runner v0.0.3... | |
| [0;mBB5 PROD runner running on bbpv1.epfl.ch, version 13.12.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor340390750, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 16159, build ref fca92bfe02a7964cdd27baaaf5dee2c6abcbcbba, job ID 56372 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P16159 | |
| A slurm job will be created with name GL_J56372_PROD_P112_CP2_C2 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job eligible for phase1 and phase2, setting partition=prod_p2,prod_p1 | |
| Submitted batch job 2541240 | |
| job state: R | |
| section_end:1631139292:prepare_executor [0Ksection_start:1631139292:prepare_script [0K[0K[36;1mPreparing environment[0;m | |
| [0;mRunning on r4i3n18 via bbpv1.epfl.ch... | |
| section_end:1631139294:prepare_script [0Ksection_start:1631139294:get_sources [0K[0K[36;1mGetting source from Git repository[0;m | |
| [0;m[32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1631139295:get_sources [0Ksection_start:1631139295:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m | |
| [0;m[32;1mDownloading artifacts for build:coreneuron:intel (56368)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=151230 revision[0;m=7a6612da version[0;m=13.12.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=56368 responseStatus[0;m=200 OK token[0;m=dhU-WAzV | |
| section_end:1631139296:download_artifacts [0Ksection_start:1631139296:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m | |
| [0;m[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426 | |
| [0;m[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| slurmstepd: error: _is_a_lwp: open() /proc/151359/status failed: No such file or directory | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env /${SPACK_INSTALLED_HASH} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r4i3n0 | |
| Build name: Linux-icpc | |
| Create new tag: 20210908-2215 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56368/spack-build/spack-stage-coreneuron-develop-slnpueymehi7yjdqxbf2l4uajdb5navc/spack-build-slnpuey | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| Start 3: alignment_test | |
| Start 4: queuing_test | |
| Start 5: lfp_test | |
| Start 6: ring_TEST | |
| 1/17 Test #2: interleave_info_constructor_test ... Passed 1.21 sec | |
| 2/17 Test #6: ring_TEST .......................... Passed 1.30 sec | |
| Start 7: ring_binqueue_TEST | |
| Start 8: ring_multisend_TEST | |
| 3/17 Test #3: alignment_test ..................... Passed 1.82 sec | |
| 4/17 Test #5: lfp_test ........................... Passed 1.82 sec | |
| 5/17 Test #4: queuing_test ....................... Passed 1.82 sec | |
| 6/17 Test #1: cmd_interface_test ................. Passed 1.83 sec | |
| Start 9: ring_spike_buffer_TEST | |
| Start 10: ring_permute1_TEST | |
| 7/17 Test #7: ring_binqueue_TEST ................. Passed 2.82 sec | |
| Start 11: ring_permute2_TEST | |
| 8/17 Test #10: ring_permute1_TEST ................. Passed 3.15 sec | |
| 9/17 Test #8: ring_multisend_TEST ................ Passed 3.36 sec | |
| 10/17 Test #9: ring_spike_buffer_TEST ............. Passed 3.15 sec | |
| Start 12: ring_gap_TEST | |
| Start 13: ring_gap_binqueue_TEST | |
| Start 14: ring_gap_multisend_TEST | |
| 11/17 Test #11: ring_permute2_TEST ................. Passed 0.85 sec | |
| Start 15: ring_gap_permute1_TEST | |
| 12/17 Test #12: ring_gap_TEST ...................... Passed 3.71 sec | |
| Start 16: ring_gap_permute2_TEST | |
| 13/17 Test #15: ring_gap_permute1_TEST ............. Passed 3.83 sec | |
| Start 17: reporting_1 | |
| 14/17 Test #13: ring_gap_binqueue_TEST ............. Passed 4.23 sec | |
| 15/17 Test #14: ring_gap_multisend_TEST ............ Passed 4.23 sec | |
| 16/17 Test #16: ring_gap_permute2_TEST ............. Passed 0.62 sec | |
| 17/17 Test #17: reporting_1 ........................ Passed 0.40 sec | |
| 100% tests passed, 0 tests failed out of 17 | |
| Total Test time (real) = 9.64 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.8.3 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1631139319:step_script [0Ksection_start:1631139319:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m | |
| [0;m[32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=152805 revision[0;m=7a6612da version[0;m=13.12.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=56372 responseStatus[0;m=201 Created token[0;m=dDMHC4ce | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=152832 revision[0;m=7a6612da version[0;m=13.12.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=56372 responseStatus[0;m=201 Created token[0;m=dDMHC4ce | |
| section_end:1631139323:upload_artifacts_on_success [0Ksection_start:1631139323:cleanup_file_variables [0K[0K[36;1mCleaning up file based variables[0;m | |
| [0;msection_end:1631139324:cleanup_file_variables [0K[32;1mJob succeeded | |
| [0;m |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
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| [0KRunning with gitlab-runner 13.12.0 (7a6612da) | |
| [0;m[0K on BB5 map runner pnPo3yJy | |
| [0;msection_start:1631142140:resolve_secrets [0K[0K[36;1mResolving secrets[0;m | |
| [0;msection_end:1631142140:resolve_secrets [0Ksection_start:1631142140:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m | |
| [0;m[0KUsing Custom executor with driver BB5 PROD runner v0.0.3... | |
| [0;mBB5 PROD runner running on bbpv1.epfl.ch, version 13.12.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor675725447, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 16159, build ref fca92bfe02a7964cdd27baaaf5dee2c6abcbcbba, job ID 56373 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P16159 | |
| A slurm job will be created with name GL_J56373_PROD_P112_CP0_C0 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job eligible for phase1 and phase2, setting partition=prod_p2,prod_p1 | |
| Submitted batch job 2544320 | |
| job state: R | |
| section_end:1631142254:prepare_executor [0Ksection_start:1631142254:prepare_script [0K[0K[36;1mPreparing environment[0;m | |
| [0;mRunning on r2i3n0 via bbpv1.epfl.ch... | |
| section_end:1631142258:prepare_script [0Ksection_start:1631142258:get_sources [0K[0K[36;1mGetting source from Git repository[0;m | |
| [0;m[32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1631142259:get_sources [0Ksection_start:1631142259:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m | |
| [0;m[32;1mDownloading artifacts for build:coreneuron+nmodl:gpu (56369)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=183440 revision[0;m=7a6612da version[0;m=13.12.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=56369 responseStatus[0;m=200 OK token[0;m=Rm46jq3x | |
| section_end:1631142260:download_artifacts [0Ksection_start:1631142260:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m | |
| [0;m[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426 | |
| [0;m[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env /${SPACK_INSTALLED_HASH} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r5i1n2 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20210908-2304 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56369/spack-build/spack-stage-coreneuron-develop-447fm7nvebzkjisj63ewsjnojxwte6nl/spack-build-447fm7n | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| Start 3: alignment_test | |
| Start 4: queuing_test | |
| Start 5: lfp_test | |
| Start 6: ring_TEST | |
| 1/18 Test #2: interleave_info_constructor_test ....... Passed 0.91 sec | |
| Start 7: ring_binqueue_TEST | |
| 2/18 Test #3: alignment_test ......................... Passed 1.46 sec | |
| 3/18 Test #4: queuing_test ........................... Passed 1.86 sec | |
| 4/18 Test #5: lfp_test ............................... Passed 1.96 sec | |
| Start 8: ring_multisend_TEST | |
| 5/18 Test #1: cmd_interface_test ..................... Passed 2.07 sec | |
| Start 9: ring_spike_buffer_TEST | |
| 6/18 Test #6: ring_TEST .............................. Passed 3.26 sec | |
| Start 10: ring_permute1_TEST | |
| 7/18 Test #7: ring_binqueue_TEST ..................... Passed 5.77 sec | |
| Start 11: ring_permute2_TEST | |
| 8/18 Test #8: ring_multisend_TEST .................... Passed 12.53 sec | |
| Start 12: ring_gap_TEST | |
| 9/18 Test #9: ring_spike_buffer_TEST ................. Passed 12.83 sec | |
| Start 13: ring_gap_binqueue_TEST | |
| 10/18 Test #10: ring_permute1_TEST ..................... Passed 12.43 sec | |
| Start 14: ring_gap_multisend_TEST | |
| 11/18 Test #11: ring_permute2_TEST ..................... Passed 11.82 sec | |
| Start 15: ring_gap_permute1_TEST | |
| 12/18 Test #13: ring_gap_binqueue_TEST ................. Passed 10.32 sec | |
| Start 16: ring_gap_permute2_TEST | |
| 13/18 Test #12: ring_gap_TEST .......................... Passed 13.63 sec | |
| 14/18 Test #14: ring_gap_multisend_TEST ................ Passed 12.81 sec | |
| Start 17: ring_permute2_cudaInterface_TEST | |
| Start 18: ring_gap_permute2_cudaInterface_TEST | |
| 15/18 Test #15: ring_gap_permute1_TEST ................. Passed 10.11 sec | |
| 16/18 Test #16: ring_gap_permute2_TEST ................. Passed 5.09 sec | |
| 17/18 Test #17: ring_permute2_cudaInterface_TEST ....... Passed 3.50 sec | |
| 18/18 Test #18: ring_gap_permute2_cudaInterface_TEST ... Passed 4.88 sec | |
| 100% tests passed, 0 tests failed out of 18 | |
| Total Test time (real) = 33.71 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.8.3 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1631142311:step_script [0Ksection_start:1631142311:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m | |
| [0;m[32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=184836 revision[0;m=7a6612da version[0;m=13.12.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=56373 responseStatus[0;m=201 Created token[0;m=xYxiYRNp | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=184863 revision[0;m=7a6612da version[0;m=13.12.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=56373 responseStatus[0;m=201 Created token[0;m=xYxiYRNp | |
| section_end:1631142313:upload_artifacts_on_success [0Ksection_start:1631142313:cleanup_file_variables [0K[0K[36;1mCleaning up file based variables[0;m | |
| [0;msection_end:1631142314:cleanup_file_variables [0K[32;1mJob succeeded | |
| [0;m |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 13.12.0 (7a6612da) | |
| [0;m[0K on BB5 map runner pnPo3yJy | |
| [0;msection_start:1631140439:resolve_secrets [0K[0K[36;1mResolving secrets[0;m | |
| [0;msection_end:1631140439:resolve_secrets [0Ksection_start:1631140439:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m | |
| [0;m[0KUsing Custom executor with driver BB5 PROD runner v0.0.3... | |
| [0;mBB5 PROD runner running on bbpv1.epfl.ch, version 13.12.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor068306304, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 16159, build ref fca92bfe02a7964cdd27baaaf5dee2c6abcbcbba, job ID 56371 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P16159 | |
| A slurm job will be created with name GL_J56371_PROD_P112_CP0_C0 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job eligible for phase1 and phase2, setting partition=prod_p2,prod_p1 | |
| Submitted batch job 2543315 | |
| job state: R | |
| section_end:1631140564:prepare_executor [0Ksection_start:1631140564:prepare_script [0K[0K[36;1mPreparing environment[0;m | |
| [0;mRunning on r5i1n20 via bbpv1.epfl.ch... | |
| section_end:1631140567:prepare_script [0Ksection_start:1631140567:get_sources [0K[0K[36;1mGetting source from Git repository[0;m | |
| [0;m[32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1631140568:get_sources [0Ksection_start:1631140568:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m | |
| [0;m[32;1mDownloading artifacts for build:coreneuron+nmodl:intel (56367)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=342078 revision[0;m=7a6612da version[0;m=13.12.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=56367 responseStatus[0;m=200 OK token[0;m=QZ42kBCj | |
| section_end:1631140569:download_artifacts [0Ksection_start:1631140569:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m | |
| [0;m[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426 | |
| [0;m[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env /${SPACK_INSTALLED_HASH} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r4i3n18 | |
| Build name: Linux-icpc | |
| Create new tag: 20210908-2236 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56367/spack-build/spack-stage-coreneuron-develop-qbq5kwhq7demfuzvegvqnmeu4bhs4fvj/spack-build-qbq5kwh | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| Start 3: alignment_test | |
| Start 4: queuing_test | |
| Start 5: lfp_test | |
| Start 6: ring_TEST | |
| 1/17 Test #6: ring_TEST .......................... Passed 1.60 sec | |
| Start 7: ring_binqueue_TEST | |
| 2/17 Test #5: lfp_test ........................... Passed 1.81 sec | |
| 3/17 Test #3: alignment_test ..................... Passed 1.91 sec | |
| 4/17 Test #2: interleave_info_constructor_test ... Passed 1.92 sec | |
| 5/17 Test #1: cmd_interface_test ................. Passed 1.92 sec | |
| Start 8: ring_multisend_TEST | |
| Start 9: ring_spike_buffer_TEST | |
| 6/17 Test #4: queuing_test ....................... Passed 2.13 sec | |
| Start 10: ring_permute1_TEST | |
| 7/17 Test #7: ring_binqueue_TEST ................. Passed 1.90 sec | |
| Start 11: ring_permute2_TEST | |
| 8/17 Test #9: ring_spike_buffer_TEST ............. Passed 3.49 sec | |
| 9/17 Test #8: ring_multisend_TEST ................ Passed 3.49 sec | |
| 10/17 Test #10: ring_permute1_TEST ................. Passed 3.23 sec | |
| 11/17 Test #11: ring_permute2_TEST ................. Passed 1.65 sec | |
| Start 12: ring_gap_TEST | |
| Start 13: ring_gap_binqueue_TEST | |
| Start 14: ring_gap_multisend_TEST | |
| Start 15: ring_gap_permute1_TEST | |
| 12/17 Test #12: ring_gap_TEST ...................... Passed 3.41 sec | |
| Start 16: ring_gap_permute2_TEST | |
| 13/17 Test #13: ring_gap_binqueue_TEST ............. Passed 3.77 sec | |
| Start 17: reporting_1 | |
| 14/17 Test #14: ring_gap_multisend_TEST ............ Passed 4.28 sec | |
| 15/17 Test #15: ring_gap_permute1_TEST ............. Passed 4.68 sec | |
| 16/17 Test #17: reporting_1 ........................ Passed 0.93 sec | |
| 17/17 Test #16: ring_gap_permute2_TEST ............. Passed 1.33 sec | |
| 100% tests passed, 0 tests failed out of 17 | |
| Total Test time (real) = 10.33 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.8.3 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1631140599:step_script [0Ksection_start:1631140599:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m | |
| [0;m[32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=343409 revision[0;m=7a6612da version[0;m=13.12.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=56371 responseStatus[0;m=201 Created token[0;m=x7Avgtqb | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=343433 revision[0;m=7a6612da version[0;m=13.12.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=56371 responseStatus[0;m=201 Created token[0;m=x7Avgtqb | |
| section_end:1631140600:upload_artifacts_on_success [0Ksection_start:1631140600:cleanup_file_variables [0K[0K[36;1mCleaning up file based variables[0;m | |
| [0;msection_end:1631140602:cleanup_file_variables [0K[32;1mJob succeeded | |
| [0;m |
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| [0KRunning with gitlab-runner 13.12.0 (7a6612da) | |
| [0;m[0K on BB5 map runner pnPo3yJy | |
| [0;msection_start:1631140043:resolve_secrets [0K[0K[36;1mResolving secrets[0;m | |
| [0;msection_end:1631140043:resolve_secrets [0Ksection_start:1631140043:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m | |
| [0;m[0KUsing Custom executor with driver BB5 PROD runner v0.0.3... | |
| [0;mBB5 PROD runner running on bbpv1.epfl.ch, version 13.12.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor048865899, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 16159, build ref fca92bfe02a7964cdd27baaaf5dee2c6abcbcbba, job ID 56382 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P16159 | |
| A slurm job will be created with name GL_J56382_PROD_P112_CP2_C2 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job eligible for phase1 and phase2, setting partition=prod_p2,prod_p1 | |
| Submitted batch job 2542312 | |
| job state: R | |
| section_end:1631140121:prepare_executor [0Ksection_start:1631140121:prepare_script [0K[0K[36;1mPreparing environment[0;m | |
| [0;mRunning on r2i3n0 via bbpv1.epfl.ch... | |
| section_end:1631140122:prepare_script [0Ksection_start:1631140122:get_sources [0K[0K[36;1mGetting source from Git repository[0;m | |
| [0;m[32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1631140122:get_sources [0Ksection_start:1631140122:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m | |
| [0;m[32;1mDownloading artifacts for build:neuron:gpu (56378)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=173439 revision[0;m=7a6612da version[0;m=13.12.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=56378 responseStatus[0;m=200 OK token[0;m=ticrhi2x | |
| section_end:1631140124:download_artifacts [0Ksection_start:1631140124:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m | |
| [0;m[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426 | |
| [0;m[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env /${SPACK_INSTALLED_HASH} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r5i1n20 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20210908-2228 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56378/spack-build/spack-stage-neuron-develop-qdta367h6ly225azfnup34o2tpbkhbcb/spack-build-qdta367 | |
| Start 1: testneuron | |
| Start 2: ringtest | |
| Start 3: connect_dend | |
| Start 4: pynrn_tests::basic_tests | |
| Start 5: rxdmod_tests::rxd_tests | |
| Start 6: rxdmod_tests::rxd_mpi_tests | |
| Start 7: parallel_tests | |
| Start 8: parallel_partrans | |
| 1/120 Test #1: testneuron ......................................................... Passed 0.43 sec | |
| Start 9: parallel_bas | |
| 2/120 Test #2: ringtest ........................................................... Passed 1.23 sec | |
| 3/120 Test #3: connect_dend ....................................................... Passed 1.33 sec | |
| Start 10: coreneuron_modtests::direct_py | |
| Start 11: coreneuron_modtests::direct_hoc | |
| 4/120 Test #8: parallel_partrans .................................................. Passed 4.98 sec | |
| Start 12: coreneuron_modtests::spikes_py | |
| 5/120 Test #11: coreneuron_modtests::direct_hoc .................................... Passed 5.10 sec | |
| Start 13: coreneuron_modtests::spikes_file_mode_py | |
| 6/120 Test #12: coreneuron_modtests::spikes_py ..................................... Passed 4.63 sec | |
| Start 14: coreneuron_modtests::datareturn_py | |
| 7/120 Test #13: coreneuron_modtests::spikes_file_mode_py ........................... Passed 4.02 sec | |
| Start 15: coreneuron_modtests::test_units_py | |
| 8/120 Test #7: parallel_tests ..................................................... Passed 11.78 sec | |
| 9/120 Test #10: coreneuron_modtests::direct_py ..................................... Passed 10.65 sec | |
| Start 16: coreneuron_modtests::test_netmove_py | |
| Start 17: coreneuron_modtests::test_watchrange_py | |
| 10/120 Test #9: parallel_bas ....................................................... Passed 12.78 sec | |
| Start 18: coreneuron_modtests::test_natrans_py | |
| 11/120 Test #15: coreneuron_modtests::test_units_py ................................. Passed 2.78 sec | |
| 12/120 Test #14: coreneuron_modtests::datareturn_py ................................. Passed 5.22 sec | |
| Start 19: coreneuron_modtests::spikes_mpi_py | |
| 13/120 Test #4: pynrn_tests::basic_tests ........................................... Passed 16.68 sec | |
| 14/120 Test #17: coreneuron_modtests::test_watchrange_py ............................ Passed 6.69 sec | |
| Start 20: coreneuron_modtests::spikes_mpi_file_mode_py | |
| 15/120 Test #16: coreneuron_modtests::test_netmove_py ............................... Passed 7.60 sec | |
| Start 21: external_ringtest::neuron | |
| 16/120 Test #18: coreneuron_modtests::test_natrans_py ............................... Passed 6.30 sec | |
| 17/120 Test #21: external_ringtest::neuron .......................................... Passed 1.81 sec | |
| Start 22: external_ringtest::neuron_mpi | |
| 18/120 Test #19: coreneuron_modtests::spikes_mpi_py ................................. Passed 6.83 sec | |
| Start 23: external_ringtest::coreneuron_cpu_mpi | |
| 19/120 Test #20: coreneuron_modtests::spikes_mpi_file_mode_py ....................... Passed 7.02 sec | |
| Start 25: external_ringtest::coreneuron_cpu_mpi_offline::preparation | |
| 20/120 Test #22: external_ringtest::neuron_mpi ...................................... Passed 4.91 sec | |
| Start 26: external_ringtest::coreneuron_cpu_mpi_threads | |
| 21/120 Test #23: external_ringtest::coreneuron_cpu_mpi .............................. Passed 6.22 sec | |
| Start 27: external_ringtest::coreneuron_gpu_mpi | |
| 22/120 Test #25: external_ringtest::coreneuron_cpu_mpi_offline::preparation ......... Passed 12.63 sec | |
| Start 24: external_ringtest::coreneuron_cpu_mpi_offline | |
| 23/120 Test #26: external_ringtest::coreneuron_cpu_mpi_threads ...................... Passed 13.93 sec | |
| Start 29: external_ringtest::coreneuron_gpu_mpi_offline::preparation | |
| 24/120 Test #27: external_ringtest::coreneuron_gpu_mpi .............................. Passed 15.43 sec | |
| Start 30: external_ringtest::coreneuron_gpu_mpi_threads | |
| 25/120 Test #24: external_ringtest::coreneuron_cpu_mpi_offline ...................... Passed 6.82 sec | |
| Start 32: testcorenrn_bbcore::neuron | |
| Start 33: testcorenrn_bbcore::coreneuron_gpu_online | |
| 26/120 Test #29: external_ringtest::coreneuron_gpu_mpi_offline::preparation ......... Passed 6.32 sec | |
| Start 28: external_ringtest::coreneuron_gpu_mpi_offline | |
| 27/120 Test #32: testcorenrn_bbcore::neuron ......................................... Passed 2.05 sec | |
| Start 34: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate | |
| 28/120 Test #33: testcorenrn_bbcore::coreneuron_gpu_online .......................... Passed 12.66 sec | |
| Start 36: testcorenrn_bbcore::coreneuron_gpu_offline::preparation | |
| 29/120 Test #34: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate ......... Passed 11.52 sec | |
| Start 37: testcorenrn_bbcore::coreneuron_cpu_online | |
| 30/120 Test #36: testcorenrn_bbcore::coreneuron_gpu_offline::preparation ............ Passed 2.11 sec | |
| Start 35: testcorenrn_bbcore::coreneuron_gpu_offline | |
| 31/120 Test #37: testcorenrn_bbcore::coreneuron_cpu_online .......................... Passed 4.91 sec | |
| Start 38: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate | |
| 32/120 Test #35: testcorenrn_bbcore::coreneuron_gpu_offline ......................... Passed 4.51 sec | |
| Start 40: testcorenrn_bbcore::coreneuron_cpu_offline::preparation | |
| 33/120 Test #28: external_ringtest::coreneuron_gpu_mpi_offline ...................... Passed 19.29 sec | |
| 34/120 Test #30: external_ringtest::coreneuron_gpu_mpi_threads ...................... Passed 22.60 sec | |
| Start 31: external_ringtest::compare_results | |
| Start 42: testcorenrn_deriv::neuron | |
| Start 43: testcorenrn_deriv::coreneuron_gpu_online | |
| Start 44: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate | |
| 35/120 Test #31: external_ringtest::compare_results ................................. Passed 0.62 sec | |
| Start 46: testcorenrn_deriv::coreneuron_gpu_offline::preparation | |
| 36/120 Test #40: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............ Passed 2.13 sec | |
| Start 39: testcorenrn_bbcore::coreneuron_cpu_offline | |
| 37/120 Test #42: testcorenrn_deriv::neuron .......................................... Passed 3.22 sec | |
| 38/120 Test #46: testcorenrn_deriv::coreneuron_gpu_offline::preparation ............. Passed 2.61 sec | |
| Start 45: testcorenrn_deriv::coreneuron_gpu_offline | |
| Start 47: testcorenrn_deriv::coreneuron_cpu_online | |
| 39/120 Test #39: testcorenrn_bbcore::coreneuron_cpu_offline ......................... Passed 3.42 sec | |
| Start 48: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate | |
| 40/120 Test #38: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ......... Passed 7.84 sec | |
| Start 41: testcorenrn_bbcore::compare_results | |
| 41/120 Test #41: testcorenrn_bbcore::compare_results ................................ Passed 0.15 sec | |
| Start 50: testcorenrn_deriv::coreneuron_cpu_offline::preparation | |
| 42/120 Test #47: testcorenrn_deriv::coreneuron_cpu_online ........................... Passed 7.05 sec | |
| 43/120 Test #50: testcorenrn_deriv::coreneuron_cpu_offline::preparation ............. Passed 3.21 sec | |
| Start 49: testcorenrn_deriv::coreneuron_cpu_offline | |
| 44/120 Test #43: testcorenrn_deriv::coreneuron_gpu_online ........................... Passed 13.68 sec | |
| Start 52: testcorenrn_gf::neuron | |
| 45/120 Test #44: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate .......... Passed 13.98 sec | |
| 46/120 Test #49: testcorenrn_deriv::coreneuron_cpu_offline .......................... Passed 2.91 sec | |
| 47/120 Test #45: testcorenrn_deriv::coreneuron_gpu_offline .......................... Passed 10.66 sec | |
| Start 53: testcorenrn_gf::coreneuron_gpu_online | |
| 48/120 Test #48: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate .......... Passed 9.56 sec | |
| Start 51: testcorenrn_deriv::compare_results | |
| 49/120 Test #51: testcorenrn_deriv::compare_results ................................. Passed 0.20 sec | |
| Start 54: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate | |
| 50/120 Test #52: testcorenrn_gf::neuron ............................................. Passed 3.43 sec | |
| Start 56: testcorenrn_gf::coreneuron_gpu_offline::preparation | |
| 51/120 Test #56: testcorenrn_gf::coreneuron_gpu_offline::preparation ................ Passed 2.21 sec | |
| Start 55: testcorenrn_gf::coreneuron_gpu_offline | |
| 52/120 Test #53: testcorenrn_gf::coreneuron_gpu_online .............................. Passed 12.94 sec | |
| Start 57: testcorenrn_gf::coreneuron_cpu_online | |
| 53/120 Test #54: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate ............. Passed 12.73 sec | |
| Start 58: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate | |
| 54/120 Test #55: testcorenrn_gf::coreneuron_gpu_offline ............................. Passed 15.53 sec | |
| Start 60: testcorenrn_gf::coreneuron_cpu_offline::preparation | |
| 55/120 Test #60: testcorenrn_gf::coreneuron_cpu_offline::preparation ................ Passed 2.36 sec | |
| Start 59: testcorenrn_gf::coreneuron_cpu_offline | |
| 56/120 Test #57: testcorenrn_gf::coreneuron_cpu_online .............................. Passed 17.50 sec | |
| Start 62: testcorenrn_patstim::neuron | |
| 57/120 Test #58: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ............. Passed 17.86 sec | |
| Start 64: testcorenrn_patstim::coreneuron_gpu_offline::preparation | |
| 58/120 Test #62: testcorenrn_patstim::neuron ........................................ Passed 2.67 sec | |
| Start 66: testcorenrn_patstim::coreneuron_cpu_offline::preparation | |
| 59/120 Test #59: testcorenrn_gf::coreneuron_cpu_offline ............................. Passed 10.59 sec | |
| Start 61: testcorenrn_gf::compare_results | |
| Start 68: testcorenrn_vecplay::neuron | |
| 60/120 Test #64: testcorenrn_patstim::coreneuron_gpu_offline::preparation ........... Passed 2.36 sec | |
| 61/120 Test #61: testcorenrn_gf::compare_results .................................... Passed 0.35 sec | |
| Start 63: testcorenrn_patstim::coreneuron_gpu_offline | |
| 62/120 Test #66: testcorenrn_patstim::coreneuron_cpu_offline::preparation ........... Passed 2.56 sec | |
| Start 65: testcorenrn_patstim::coreneuron_cpu_offline | |
| 63/120 Test #68: testcorenrn_vecplay::neuron ........................................ Passed 2.66 sec | |
| Start 69: testcorenrn_vecplay::coreneuron_gpu_online | |
| 64/120 Test #63: testcorenrn_patstim::coreneuron_gpu_offline ........................ Passed 6.32 sec | |
| Start 70: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate | |
| 65/120 Test #65: testcorenrn_patstim::coreneuron_cpu_offline ........................ Passed 11.33 sec | |
| Start 67: testcorenrn_patstim::compare_results | |
| 66/120 Test #67: testcorenrn_patstim::compare_results ............................... Passed 0.10 sec | |
| Start 72: testcorenrn_vecplay::coreneuron_gpu_offline::preparation | |
| 67/120 Test #72: testcorenrn_vecplay::coreneuron_gpu_offline::preparation ........... Passed 2.61 sec | |
| Start 71: testcorenrn_vecplay::coreneuron_gpu_offline | |
| 68/120 Test #69: testcorenrn_vecplay::coreneuron_gpu_online ......................... Passed 19.34 sec | |
| Start 73: testcorenrn_vecplay::coreneuron_cpu_online | |
| 69/120 Test #70: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate ........ Passed 20.94 sec | |
| Start 74: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate | |
| 70/120 Test #71: testcorenrn_vecplay::coreneuron_gpu_offline ........................ Passed 19.54 sec | |
| Start 76: testcorenrn_vecplay::coreneuron_cpu_offline::preparation | |
| 71/120 Test #76: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ........... Passed 2.61 sec | |
| Start 75: testcorenrn_vecplay::coreneuron_cpu_offline | |
| 72/120 Test #73: testcorenrn_vecplay::coreneuron_cpu_online ......................... Passed 18.54 sec | |
| 73/120 Test #74: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........ Passed 16.53 sec | |
| Start 78: testcorenrn_vecevent::neuron | |
| 74/120 Test #75: testcorenrn_vecplay::coreneuron_cpu_offline ........................ Passed 7.51 sec | |
| Start 77: testcorenrn_vecplay::compare_results | |
| 75/120 Test #77: testcorenrn_vecplay::compare_results ............................... Passed 0.10 sec | |
| 76/120 Test #78: testcorenrn_vecevent::neuron ....................................... Passed 2.81 sec | |
| Start 79: testcorenrn_vecevent::coreneuron_gpu_online | |
| 77/120 Test #79: testcorenrn_vecevent::coreneuron_gpu_online ........................ Passed 19.02 sec | |
| Start 80: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate | |
| 78/120 Test #80: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate ....... Passed 19.94 sec | |
| Start 82: testcorenrn_vecevent::coreneuron_gpu_offline::preparation | |
| 79/120 Test #82: testcorenrn_vecevent::coreneuron_gpu_offline::preparation .......... Passed 3.44 sec | |
| Start 81: testcorenrn_vecevent::coreneuron_gpu_offline | |
| 80/120 Test #81: testcorenrn_vecevent::coreneuron_gpu_offline ....................... Passed 14.22 sec | |
| Start 83: testcorenrn_vecevent::coreneuron_cpu_online | |
| 81/120 Test #83: testcorenrn_vecevent::coreneuron_cpu_online ........................ Passed 15.16 sec | |
| Start 84: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate | |
| 82/120 Test #84: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ....... Passed 14.52 sec | |
| Start 86: testcorenrn_vecevent::coreneuron_cpu_offline::preparation | |
| Start 88: testcorenrn_watch::neuron | |
| 83/120 Test #86: testcorenrn_vecevent::coreneuron_cpu_offline::preparation .......... Passed 2.91 sec | |
| 84/120 Test #88: testcorenrn_watch::neuron .......................................... Passed 2.91 sec | |
| Start 85: testcorenrn_vecevent::coreneuron_cpu_offline | |
| Start 89: testcorenrn_watch::coreneuron_gpu_online | |
| 85/120 Test #5: rxdmod_tests::rxd_tests ............................................ Passed 257.59 sec | |
| 86/120 Test #85: testcorenrn_vecevent::coreneuron_cpu_offline ....................... Passed 14.72 sec | |
| 87/120 Test #89: testcorenrn_watch::coreneuron_gpu_online ........................... Passed 14.82 sec | |
| Start 87: testcorenrn_vecevent::compare_results | |
| Start 90: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate | |
| Start 92: testcorenrn_watch::coreneuron_gpu_offline::preparation | |
| Start 93: testcorenrn_watch::coreneuron_cpu_online | |
| 88/120 Test #87: testcorenrn_vecevent::compare_results .............................. Passed 0.13 sec | |
| 89/120 Test #92: testcorenrn_watch::coreneuron_gpu_offline::preparation ............. Passed 2.63 sec | |
| Start 91: testcorenrn_watch::coreneuron_gpu_offline | |
| 90/120 Test #90: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate .......... Passed 12.62 sec | |
| Start 94: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate | |
| 91/120 Test #91: testcorenrn_watch::coreneuron_gpu_offline .......................... Passed 11.30 sec | |
| Start 96: testcorenrn_watch::coreneuron_cpu_offline::preparation | |
| Start 98: testcorenrn_conc::neuron | |
| 92/120 Test #98: testcorenrn_conc::neuron ........................................... Passed 1.80 sec | |
| 93/120 Test #96: testcorenrn_watch::coreneuron_cpu_offline::preparation ............. Passed 2.11 sec | |
| Start 95: testcorenrn_watch::coreneuron_cpu_offline | |
| Start 99: testcorenrn_conc::coreneuron_gpu_online | |
| 94/120 Test #93: testcorenrn_watch::coreneuron_cpu_online ........................... Passed 17.94 sec | |
| Start 100: testcorenrn_conc::coreneuron_gpu_online_psolve_alternate | |
| Start 102: testcorenrn_conc::coreneuron_gpu_offline::preparation | |
| 95/120 Test #102: testcorenrn_conc::coreneuron_gpu_offline::preparation .............. Passed 1.88 sec | |
| 96/120 Test #94: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate .......... Passed 7.51 sec | |
| Start 101: testcorenrn_conc::coreneuron_gpu_offline | |
| Start 103: testcorenrn_conc::coreneuron_cpu_online | |
| Start 104: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate | |
| 97/120 Test #95: testcorenrn_watch::coreneuron_cpu_offline .......................... Passed 4.41 sec | |
| Start 97: testcorenrn_watch::compare_results | |
| Start 106: testcorenrn_conc::coreneuron_cpu_offline::preparation | |
| 98/120 Test #97: testcorenrn_watch::compare_results ................................. Passed 0.31 sec | |
| Start 108: testcorenrn_kin::neuron | |
| 99/120 Test #99: testcorenrn_conc::coreneuron_gpu_online ............................ Passed 7.52 sec | |
| Start 109: testcorenrn_kin::coreneuron_gpu_online | |
| 100/120 Test #106: testcorenrn_conc::coreneuron_cpu_offline::preparation .............. Passed 3.28 sec | |
| Start 105: testcorenrn_conc::coreneuron_cpu_offline | |
| 101/120 Test #108: testcorenrn_kin::neuron ............................................ Passed 3.38 sec | |
| Start 110: testcorenrn_kin::coreneuron_gpu_online_psolve_alternate | |
| 102/120 Test #100: testcorenrn_conc::coreneuron_gpu_online_psolve_alternate ........... Passed 8.69 sec | |
| Start 112: testcorenrn_kin::coreneuron_gpu_offline::preparation | |
| 103/120 Test #103: testcorenrn_conc::coreneuron_cpu_online ............................ Passed 6.70 sec | |
| Start 113: testcorenrn_kin::coreneuron_cpu_online | |
| 104/120 Test #105: testcorenrn_conc::coreneuron_cpu_offline ........................... Passed 3.22 sec | |
| 105/120 Test #104: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ........... Passed 7.83 sec | |
| Start 114: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate | |
| Start 116: testcorenrn_kin::coreneuron_cpu_offline::preparation | |
| 106/120 Test #112: testcorenrn_kin::coreneuron_gpu_offline::preparation ............... Passed 2.34 sec | |
| Start 111: testcorenrn_kin::coreneuron_gpu_offline | |
| 107/120 Test #101: testcorenrn_conc::coreneuron_gpu_offline ........................... Passed 10.28 sec | |
| 108/120 Test #116: testcorenrn_kin::coreneuron_cpu_offline::preparation ............... Passed 2.34 sec | |
| Start 107: testcorenrn_conc::compare_results | |
| Start 115: testcorenrn_kin::coreneuron_cpu_offline | |
| 109/120 Test #107: testcorenrn_conc::compare_results .................................. Passed 0.09 sec | |
| 110/120 Test #113: testcorenrn_kin::coreneuron_cpu_online ............................. Passed 5.07 sec | |
| Start 118: testcorenrn_netstimdirect::direct_netstimdirect | |
| 111/120 Test #109: testcorenrn_kin::coreneuron_gpu_online ............................. Passed 9.56 sec | |
| 112/120 Test #115: testcorenrn_kin::coreneuron_cpu_offline ............................ Passed 2.90 sec | |
| Start 119: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate | |
| 113/120 Test #114: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ............ Passed 6.36 sec | |
| 114/120 Test #110: testcorenrn_kin::coreneuron_gpu_online_psolve_alternate ............ Passed 9.60 sec | |
| 115/120 Test #111: testcorenrn_kin::coreneuron_gpu_offline ............................ Passed 5.65 sec | |
| Start 117: testcorenrn_kin::compare_results | |
| 116/120 Test #117: testcorenrn_kin::compare_results ................................... Passed 0.06 sec | |
| 117/120 Test #118: testcorenrn_netstimdirect::direct_netstimdirect .................... Passed 10.60 sec | |
| 118/120 Test #119: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ... Passed 10.00 sec | |
| Start 120: testcorenrn_netstimdirect::compare_results | |
| 119/120 Test #120: testcorenrn_netstimdirect::compare_results ......................... Passed 0.06 sec | |
| 120/120 Test #6: rxdmod_tests::rxd_mpi_tests ........................................ Passed 314.61 sec | |
| 100% tests passed, 0 tests failed out of 120 | |
| Total Test time (real) = 314.68 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.8.3 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1631140454:step_script [0Ksection_start:1631140454:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m | |
| [0;m[32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=179914 revision[0;m=7a6612da version[0;m=13.12.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=56382 responseStatus[0;m=201 Created token[0;m=gEx8yvLx | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=179939 revision[0;m=7a6612da version[0;m=13.12.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=56382 responseStatus[0;m=201 Created token[0;m=gEx8yvLx | |
| section_end:1631140456:upload_artifacts_on_success [0Ksection_start:1631140456:cleanup_file_variables [0K[0K[36;1mCleaning up file based variables[0;m | |
| [0;msection_end:1631140459:cleanup_file_variables [0K[32;1mJob succeeded | |
| [0;m |
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| [0KRunning with gitlab-runner 13.12.0 (7a6612da) | |
| [0;m[0K on BB5 map runner pnPo3yJy | |
| [0;msection_start:1631139644:resolve_secrets [0K[0K[36;1mResolving secrets[0;m | |
| [0;msection_end:1631139644:resolve_secrets [0Ksection_start:1631139644:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m | |
| [0;m[0KUsing Custom executor with driver BB5 PROD runner v0.0.3... | |
| [0;mBB5 PROD runner running on bbpv1.epfl.ch, version 13.12.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor640126738, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 16159, build ref fca92bfe02a7964cdd27baaaf5dee2c6abcbcbba, job ID 56380 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P16159 | |
| A slurm job will be created with name GL_J56380_PROD_P112_CP2_C2 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job eligible for phase1 and phase2, setting partition=prod_p2,prod_p1 | |
| Submitted batch job 2542309 | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| section_end:1631139770:prepare_executor [0Ksection_start:1631139770:prepare_script [0K[0K[36;1mPreparing environment[0;m | |
| [0;mRunning on r2i2n13 via bbpv1.epfl.ch... | |
| section_end:1631139771:prepare_script [0Ksection_start:1631139771:get_sources [0K[0K[36;1mGetting source from Git repository[0;m | |
| [0;m[32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1631139772:get_sources [0Ksection_start:1631139772:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m | |
| [0;m[32;1mDownloading artifacts for build:neuron:intel (56376)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=92895 revision[0;m=7a6612da version[0;m=13.12.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=56376 responseStatus[0;m=200 OK token[0;m=bB7mEacN | |
| section_end:1631139774:download_artifacts [0Ksection_start:1631139774:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m | |
| [0;m[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426 | |
| [0;m[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env /${SPACK_INSTALLED_HASH} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r4i3n18 | |
| Build name: Linux-icpc | |
| Create new tag: 20210908-2223 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56376/spack-build/spack-stage-neuron-develop-5kdcka37x3gxke2xyyl4ihllzpls2crx/spack-build-5kdcka3 | |
| Start 1: testneuron | |
| Start 2: ringtest | |
| Start 3: connect_dend | |
| Start 4: pynrn_tests::basic_tests | |
| Start 5: rxdmod_tests::rxd_tests | |
| Start 6: rxdmod_tests::rxd_mpi_tests | |
| Start 7: parallel_tests | |
| Start 8: parallel_partrans | |
| 1/83 Test #1: testneuron ......................................................... Passed 0.53 sec | |
| Start 9: parallel_bas | |
| 2/83 Test #3: connect_dend ....................................................... Passed 0.72 sec | |
| 3/83 Test #2: ringtest ........................................................... Passed 0.93 sec | |
| Start 10: coreneuron_modtests::direct_py | |
| Start 11: coreneuron_modtests::direct_hoc | |
| 4/83 Test #11: coreneuron_modtests::direct_hoc .................................... Passed 0.50 sec | |
| Start 12: coreneuron_modtests::spikes_py | |
| 5/83 Test #10: coreneuron_modtests::direct_py ..................................... Passed 4.72 sec | |
| Start 13: coreneuron_modtests::spikes_file_mode_py | |
| 6/83 Test #12: coreneuron_modtests::spikes_py ..................................... Passed 5.02 sec | |
| Start 14: coreneuron_modtests::fornetcon_py | |
| 7/83 Test #9: parallel_bas ....................................................... Passed 8.02 sec | |
| Start 15: coreneuron_modtests::datareturn_py | |
| 8/83 Test #4: pynrn_tests::basic_tests ........................................... Passed 9.34 sec | |
| Start 16: coreneuron_modtests::test_units_py | |
| 9/83 Test #8: parallel_partrans .................................................. Passed 11.16 sec | |
| Start 17: coreneuron_modtests::test_netmove_py | |
| 10/83 Test #7: parallel_tests ..................................................... Passed 11.47 sec | |
| Start 18: coreneuron_modtests::test_watchrange_py | |
| 11/83 Test #13: coreneuron_modtests::spikes_file_mode_py ........................... Passed 12.55 sec | |
| Start 19: coreneuron_modtests::test_natrans_py | |
| 12/83 Test #14: coreneuron_modtests::fornetcon_py .................................. Passed 14.35 sec | |
| 13/83 Test #16: coreneuron_modtests::test_units_py ................................. Passed 12.55 sec | |
| Start 20: coreneuron_modtests::spikes_mpi_py | |
| 14/83 Test #15: coreneuron_modtests::datareturn_py ................................. Passed 13.81 sec | |
| 15/83 Test #18: coreneuron_modtests::test_watchrange_py ............................ Passed 11.97 sec | |
| Start 21: coreneuron_modtests::spikes_mpi_file_mode_py | |
| 16/83 Test #17: coreneuron_modtests::test_netmove_py ............................... Passed 13.18 sec | |
| Start 22: external_ringtest::neuron | |
| 17/83 Test #19: coreneuron_modtests::test_natrans_py ............................... Passed 5.57 sec | |
| 18/83 Test #22: external_ringtest::neuron .......................................... Passed 2.04 sec | |
| Start 23: external_ringtest::neuron_mpi | |
| 19/83 Test #21: coreneuron_modtests::spikes_mpi_file_mode_py ....................... Passed 3.05 sec | |
| Start 24: external_ringtest::coreneuron_cpu_mpi | |
| 20/83 Test #20: coreneuron_modtests::spikes_mpi_py ................................. Passed 4.90 sec | |
| Start 26: external_ringtest::coreneuron_cpu_mpi_offline::preparation | |
| 21/83 Test #23: external_ringtest::neuron_mpi ...................................... Passed 3.41 sec | |
| Start 27: external_ringtest::coreneuron_cpu_mpi_threads | |
| 22/83 Test #24: external_ringtest::coreneuron_cpu_mpi .............................. Passed 4.82 sec | |
| 23/83 Test #26: external_ringtest::coreneuron_cpu_mpi_offline::preparation ......... Passed 4.48 sec | |
| Start 25: external_ringtest::coreneuron_cpu_mpi_offline | |
| Start 29: testcorenrn_bbcore::neuron | |
| Start 30: testcorenrn_bbcore::coreneuron_cpu_online | |
| 24/83 Test #27: external_ringtest::coreneuron_cpu_mpi_threads ...................... Passed 3.49 sec | |
| Start 31: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate | |
| Start 33: testcorenrn_bbcore::coreneuron_cpu_offline::preparation | |
| 25/83 Test #29: testcorenrn_bbcore::neuron ......................................... Passed 2.62 sec | |
| Start 35: testcorenrn_deriv::neuron | |
| 26/83 Test #33: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............ Passed 2.11 sec | |
| 27/83 Test #30: testcorenrn_bbcore::coreneuron_cpu_online .......................... Passed 3.32 sec | |
| Start 32: testcorenrn_bbcore::coreneuron_cpu_offline | |
| Start 36: testcorenrn_deriv::coreneuron_cpu_online | |
| 28/83 Test #31: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ......... Passed 2.92 sec | |
| 29/83 Test #25: external_ringtest::coreneuron_cpu_mpi_offline ...................... Passed 4.13 sec | |
| Start 28: external_ringtest::compare_results | |
| Start 37: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate | |
| Start 39: testcorenrn_deriv::coreneuron_cpu_offline::preparation | |
| 30/83 Test #28: external_ringtest::compare_results ................................. Passed 0.11 sec | |
| 31/83 Test #35: testcorenrn_deriv::neuron .......................................... Passed 1.72 sec | |
| Start 41: testcorenrn_gf::neuron | |
| 32/83 Test #32: testcorenrn_bbcore::coreneuron_cpu_offline ......................... Passed 2.42 sec | |
| Start 34: testcorenrn_bbcore::compare_results | |
| 33/83 Test #34: testcorenrn_bbcore::compare_results ................................ Passed 0.06 sec | |
| 34/83 Test #37: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate .......... Passed 2.08 sec | |
| 35/83 Test #36: testcorenrn_deriv::coreneuron_cpu_online ........................... Passed 2.68 sec | |
| Start 42: testcorenrn_gf::coreneuron_cpu_online | |
| 36/83 Test #39: testcorenrn_deriv::coreneuron_cpu_offline::preparation ............. Passed 2.58 sec | |
| Start 38: testcorenrn_deriv::coreneuron_cpu_offline | |
| 37/83 Test #41: testcorenrn_gf::neuron ............................................. Passed 2.98 sec | |
| Start 43: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate | |
| 38/83 Test #38: testcorenrn_deriv::coreneuron_cpu_offline .......................... Passed 1.58 sec | |
| Start 40: testcorenrn_deriv::compare_results | |
| 39/83 Test #40: testcorenrn_deriv::compare_results ................................. Passed 0.10 sec | |
| Start 45: testcorenrn_gf::coreneuron_cpu_offline::preparation | |
| 40/83 Test #42: testcorenrn_gf::coreneuron_cpu_online .............................. Passed 3.69 sec | |
| Start 47: testcorenrn_patstim::neuron | |
| 41/83 Test #43: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ............. Passed 3.69 sec | |
| Start 49: testcorenrn_patstim::coreneuron_cpu_offline::preparation | |
| 42/83 Test #45: testcorenrn_gf::coreneuron_cpu_offline::preparation ................ Passed 2.81 sec | |
| Start 44: testcorenrn_gf::coreneuron_cpu_offline | |
| 43/83 Test #47: testcorenrn_patstim::neuron ........................................ Passed 2.38 sec | |
| Start 51: testcorenrn_vecplay::neuron | |
| 44/83 Test #49: testcorenrn_patstim::coreneuron_cpu_offline::preparation ........... Passed 1.55 sec | |
| Start 48: testcorenrn_patstim::coreneuron_cpu_offline | |
| 45/83 Test #44: testcorenrn_gf::coreneuron_cpu_offline ............................. Passed 1.85 sec | |
| Start 46: testcorenrn_gf::compare_results | |
| 46/83 Test #46: testcorenrn_gf::compare_results .................................... Passed 0.30 sec | |
| Start 52: testcorenrn_vecplay::coreneuron_cpu_online | |
| 47/83 Test #51: testcorenrn_vecplay::neuron ........................................ Passed 1.79 sec | |
| Start 53: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate | |
| 48/83 Test #48: testcorenrn_patstim::coreneuron_cpu_offline ........................ Passed 1.81 sec | |
| Start 50: testcorenrn_patstim::compare_results | |
| 49/83 Test #50: testcorenrn_patstim::compare_results ............................... Passed 0.10 sec | |
| Start 55: testcorenrn_vecplay::coreneuron_cpu_offline::preparation | |
| 50/83 Test #52: testcorenrn_vecplay::coreneuron_cpu_online ......................... Passed 2.11 sec | |
| 51/83 Test #53: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........ Passed 2.41 sec | |
| Start 57: testcorenrn_vecevent::neuron | |
| 52/83 Test #55: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ........... Passed 3.11 sec | |
| Start 54: testcorenrn_vecplay::coreneuron_cpu_offline | |
| 53/83 Test #57: testcorenrn_vecevent::neuron ....................................... Passed 3.41 sec | |
| Start 58: testcorenrn_vecevent::coreneuron_cpu_online | |
| 54/83 Test #54: testcorenrn_vecplay::coreneuron_cpu_offline ........................ Passed 1.96 sec | |
| Start 56: testcorenrn_vecplay::compare_results | |
| 55/83 Test #56: testcorenrn_vecplay::compare_results ............................... Passed 0.40 sec | |
| 56/83 Test #58: testcorenrn_vecevent::coreneuron_cpu_online ........................ Passed 4.57 sec | |
| Start 59: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate | |
| 57/83 Test #59: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ....... Passed 6.32 sec | |
| Start 61: testcorenrn_vecevent::coreneuron_cpu_offline::preparation | |
| Start 63: testcorenrn_watch::neuron | |
| 58/83 Test #5: rxdmod_tests::rxd_tests ............................................ Passed 66.80 sec | |
| 59/83 Test #61: testcorenrn_vecevent::coreneuron_cpu_offline::preparation .......... Passed 4.51 sec | |
| 60/83 Test #63: testcorenrn_watch::neuron .......................................... Passed 4.61 sec | |
| Start 60: testcorenrn_vecevent::coreneuron_cpu_offline | |
| Start 64: testcorenrn_watch::coreneuron_cpu_online | |
| 61/83 Test #60: testcorenrn_vecevent::coreneuron_cpu_offline ....................... Passed 2.41 sec | |
| Start 62: testcorenrn_vecevent::compare_results | |
| Start 65: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate | |
| Start 67: testcorenrn_watch::coreneuron_cpu_offline::preparation | |
| 62/83 Test #62: testcorenrn_vecevent::compare_results .............................. Passed 0.31 sec | |
| 63/83 Test #64: testcorenrn_watch::coreneuron_cpu_online ........................... Passed 4.02 sec | |
| Start 69: testcorenrn_conc::neuron | |
| Start 70: testcorenrn_conc::coreneuron_cpu_online | |
| Start 71: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate | |
| 64/83 Test #67: testcorenrn_watch::coreneuron_cpu_offline::preparation ............. Passed 2.73 sec | |
| 65/83 Test #65: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate .......... Passed 3.13 sec | |
| Start 66: testcorenrn_watch::coreneuron_cpu_offline | |
| Start 73: testcorenrn_conc::coreneuron_cpu_offline::preparation | |
| Start 75: testcorenrn_kin::neuron | |
| 66/83 Test #69: testcorenrn_conc::neuron ........................................... Passed 3.63 sec | |
| Start 76: testcorenrn_kin::coreneuron_cpu_online | |
| 67/83 Test #75: testcorenrn_kin::neuron ............................................ Passed 2.11 sec | |
| Start 77: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate | |
| 68/83 Test #73: testcorenrn_conc::coreneuron_cpu_offline::preparation .............. Passed 2.71 sec | |
| Start 72: testcorenrn_conc::coreneuron_cpu_offline | |
| 69/83 Test #66: testcorenrn_watch::coreneuron_cpu_offline .......................... Passed 3.32 sec | |
| 70/83 Test #71: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ........... Passed 5.20 sec | |
| Start 68: testcorenrn_watch::compare_results | |
| Start 79: testcorenrn_kin::coreneuron_cpu_offline::preparation | |
| 71/83 Test #68: testcorenrn_watch::compare_results ................................. Passed 0.11 sec | |
| 72/83 Test #70: testcorenrn_conc::coreneuron_cpu_online ............................ Passed 5.61 sec | |
| Start 81: testcorenrn_netstimdirect::direct_netstimdirect | |
| 73/83 Test #79: testcorenrn_kin::coreneuron_cpu_offline::preparation ............... Passed 2.14 sec | |
| Start 78: testcorenrn_kin::coreneuron_cpu_offline | |
| 74/83 Test #72: testcorenrn_conc::coreneuron_cpu_offline ........................... Passed 3.23 sec | |
| Start 74: testcorenrn_conc::compare_results | |
| 75/83 Test #74: testcorenrn_conc::compare_results .................................. Passed 0.40 sec | |
| Start 82: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate | |
| 76/83 Test #76: testcorenrn_kin::coreneuron_cpu_online ............................. Passed 5.63 sec | |
| 77/83 Test #81: testcorenrn_netstimdirect::direct_netstimdirect .................... Passed 3.54 sec | |
| 78/83 Test #77: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ............ Passed 5.44 sec | |
| 79/83 Test #78: testcorenrn_kin::coreneuron_cpu_offline ............................ Passed 3.52 sec | |
| Start 80: testcorenrn_kin::compare_results | |
| 80/83 Test #80: testcorenrn_kin::compare_results ................................... Passed 0.05 sec | |
| 81/83 Test #82: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ... Passed 3.76 sec | |
| Start 83: testcorenrn_netstimdirect::compare_results | |
| 82/83 Test #83: testcorenrn_netstimdirect::compare_results ......................... Passed 0.10 sec | |
| 83/83 Test #6: rxdmod_tests::rxd_mpi_tests ........................................ Passed 91.33 sec | |
| 100% tests passed, 0 tests failed out of 83 | |
| Total Test time (real) = 91.39 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.8.3 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1631139886:step_script [0Ksection_start:1631139886:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m | |
| [0;m[32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=97681 revision[0;m=7a6612da version[0;m=13.12.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=56380 responseStatus[0;m=201 Created token[0;m=NKhP36b6 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=97708 revision[0;m=7a6612da version[0;m=13.12.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=56380 responseStatus[0;m=201 Created token[0;m=NKhP36b6 | |
| section_end:1631139894:upload_artifacts_on_success [0Ksection_start:1631139894:cleanup_file_variables [0K[0K[36;1mCleaning up file based variables[0;m | |
| [0;msection_end:1631139904:cleanup_file_variables [0K[32;1mJob succeeded | |
| [0;m |
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| [0KRunning with gitlab-runner 13.12.0 (7a6612da) | |
| [0;m[0K on BB5 map runner pnPo3yJy | |
| [0;msection_start:1631142680:resolve_secrets [0K[0K[36;1mResolving secrets[0;m | |
| [0;msection_end:1631142680:resolve_secrets [0Ksection_start:1631142680:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m | |
| [0;m[0KUsing Custom executor with driver BB5 PROD runner v0.0.3... | |
| [0;mBB5 PROD runner running on bbpv1.epfl.ch, version 13.12.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor138193121, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 16159, build ref fca92bfe02a7964cdd27baaaf5dee2c6abcbcbba, job ID 56381 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P16159 | |
| A slurm job will be created with name GL_J56381_PROD_P112_CP0_C0 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job eligible for phase1 and phase2, setting partition=prod_p2,prod_p1 | |
| Submitted batch job 2545324 | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| section_end:1631142896:prepare_executor [0Ksection_start:1631142896:prepare_script [0K[0K[36;1mPreparing environment[0;m | |
| [0;mRunning on r2i3n0 via bbpv1.epfl.ch... | |
| section_end:1631142898:prepare_script [0Ksection_start:1631142898:get_sources [0K[0K[36;1mGetting source from Git repository[0;m | |
| [0;m[32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1631142900:get_sources [0Ksection_start:1631142900:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m | |
| [0;m[32;1mDownloading artifacts for build:neuron+nmodl:gpu (56377)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=186194 revision[0;m=7a6612da version[0;m=13.12.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=56377 responseStatus[0;m=200 OK token[0;m=bYvSaVyN | |
| section_end:1631142902:download_artifacts [0Ksection_start:1631142902:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m | |
| [0;m[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426 | |
| [0;m[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env /${SPACK_INSTALLED_HASH} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r4i3n18 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20210908-2315 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56377/spack-build/spack-stage-neuron-develop-elteezpyv242s6ewz6bmdeq2iphaajw5/spack-build-elteezp | |
| Start 1: testneuron | |
| Start 2: ringtest | |
| Start 3: connect_dend | |
| Start 4: pynrn_tests::basic_tests | |
| Start 5: rxdmod_tests::rxd_tests | |
| Start 6: rxdmod_tests::rxd_mpi_tests | |
| Start 7: parallel_tests | |
| Start 8: parallel_partrans | |
| 1/100 Test #3: connect_dend ....................................................... Passed 0.72 sec | |
| Start 9: parallel_bas | |
| 2/100 Test #1: testneuron ......................................................... Passed 0.83 sec | |
| 3/100 Test #2: ringtest ........................................................... Passed 0.83 sec | |
| Start 10: coreneuron_modtests::direct_py | |
| Start 11: coreneuron_modtests::direct_hoc | |
| 4/100 Test #7: parallel_tests ..................................................... Passed 7.99 sec | |
| 5/100 Test #8: parallel_partrans .................................................. Passed 8.19 sec | |
| 6/100 Test #11: coreneuron_modtests::direct_hoc .................................... Passed 6.87 sec | |
| Start 12: coreneuron_modtests::spikes_py | |
| Start 13: coreneuron_modtests::spikes_file_mode_py | |
| Start 14: coreneuron_modtests::datareturn_py | |
| 7/100 Test #10: coreneuron_modtests::direct_py ..................................... Passed 7.29 sec | |
| Start 15: coreneuron_modtests::test_units_py | |
| 8/100 Test #15: coreneuron_modtests::test_units_py ................................. Passed 4.41 sec | |
| Start 16: coreneuron_modtests::test_netmove_py | |
| 9/100 Test #13: coreneuron_modtests::spikes_file_mode_py ........................... Passed 5.73 sec | |
| Start 17: coreneuron_modtests::test_watchrange_py | |
| 10/100 Test #14: coreneuron_modtests::datareturn_py ................................. Passed 6.93 sec | |
| 11/100 Test #12: coreneuron_modtests::spikes_py ..................................... Passed 6.94 sec | |
| Start 18: coreneuron_modtests::test_natrans_py | |
| 12/100 Test #17: coreneuron_modtests::test_watchrange_py ............................ Passed 3.71 sec | |
| Start 19: coreneuron_modtests::spikes_mpi_py | |
| 13/100 Test #18: coreneuron_modtests::test_natrans_py ............................... Passed 3.31 sec | |
| 14/100 Test #9: parallel_bas ....................................................... Passed 19.45 sec | |
| Start 20: coreneuron_modtests::spikes_mpi_file_mode_py | |
| 15/100 Test #16: coreneuron_modtests::test_netmove_py ............................... Passed 7.34 sec | |
| Start 21: external_ringtest::neuron | |
| 16/100 Test #4: pynrn_tests::basic_tests ........................................... Passed 22.43 sec | |
| 17/100 Test #21: external_ringtest::neuron .......................................... Passed 1.92 sec | |
| Start 22: external_ringtest::neuron_mpi | |
| 18/100 Test #19: coreneuron_modtests::spikes_mpi_py ................................. Passed 7.05 sec | |
| Start 23: external_ringtest::coreneuron_cpu_mpi | |
| 19/100 Test #22: external_ringtest::neuron_mpi ...................................... Passed 3.61 sec | |
| Start 25: external_ringtest::coreneuron_cpu_mpi_offline::preparation | |
| 20/100 Test #20: coreneuron_modtests::spikes_mpi_file_mode_py ....................... Passed 7.95 sec | |
| Start 26: external_ringtest::coreneuron_cpu_mpi_threads | |
| 21/100 Test #23: external_ringtest::coreneuron_cpu_mpi .............................. Passed 7.85 sec | |
| Start 27: external_ringtest::coreneuron_gpu_mpi | |
| 22/100 Test #26: external_ringtest::coreneuron_cpu_mpi_threads ...................... Passed 9.84 sec | |
| Start 29: external_ringtest::coreneuron_gpu_mpi_offline::preparation | |
| 23/100 Test #25: external_ringtest::coreneuron_cpu_mpi_offline::preparation ......... Passed 10.85 sec | |
| Start 24: external_ringtest::coreneuron_cpu_mpi_offline | |
| 24/100 Test #29: external_ringtest::coreneuron_gpu_mpi_offline::preparation ......... Passed 6.01 sec | |
| Start 28: external_ringtest::coreneuron_gpu_mpi_offline | |
| 25/100 Test #24: external_ringtest::coreneuron_cpu_mpi_offline ...................... Passed 6.81 sec | |
| Start 30: external_ringtest::coreneuron_gpu_mpi_threads | |
| 26/100 Test #28: external_ringtest::coreneuron_gpu_mpi_offline ...................... Passed 9.09 sec | |
| Start 32: testcorenrn_bbcore::neuron | |
| Start 33: testcorenrn_bbcore::coreneuron_gpu_online | |
| 27/100 Test #32: testcorenrn_bbcore::neuron ......................................... Passed 1.91 sec | |
| Start 34: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate | |
| 28/100 Test #33: testcorenrn_bbcore::coreneuron_gpu_online .......................... Passed 4.01 sec | |
| Start 36: testcorenrn_bbcore::coreneuron_gpu_offline::preparation | |
| 29/100 Test #36: testcorenrn_bbcore::coreneuron_gpu_offline::preparation ............ Passed 2.00 sec | |
| Start 35: testcorenrn_bbcore::coreneuron_gpu_offline | |
| 30/100 Test #34: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate ......... Passed 7.72 sec | |
| Start 37: testcorenrn_bbcore::coreneuron_cpu_online | |
| 31/100 Test #37: testcorenrn_bbcore::coreneuron_cpu_online .......................... Passed 3.71 sec | |
| Start 38: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate | |
| 32/100 Test #38: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ......... Passed 4.21 sec | |
| Start 40: testcorenrn_bbcore::coreneuron_cpu_offline::preparation | |
| 33/100 Test #40: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............ Passed 2.51 sec | |
| Start 39: testcorenrn_bbcore::coreneuron_cpu_offline | |
| 34/100 Test #39: testcorenrn_bbcore::coreneuron_cpu_offline ......................... Passed 1.90 sec | |
| Start 42: testcorenrn_deriv::neuron | |
| 35/100 Test #42: testcorenrn_deriv::neuron .......................................... Passed 2.51 sec | |
| Start 43: testcorenrn_deriv::coreneuron_gpu_online | |
| 36/100 Test #30: external_ringtest::coreneuron_gpu_mpi_threads ...................... Passed 38.56 sec | |
| Start 44: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate | |
| Start 46: testcorenrn_deriv::coreneuron_gpu_offline::preparation | |
| 37/100 Test #46: testcorenrn_deriv::coreneuron_gpu_offline::preparation ............. Passed 1.92 sec | |
| Start 45: testcorenrn_deriv::coreneuron_gpu_offline | |
| 38/100 Test #43: testcorenrn_deriv::coreneuron_gpu_online ........................... Passed 6.44 sec | |
| Start 47: testcorenrn_deriv::coreneuron_cpu_online | |
| 39/100 Test #44: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate .......... Passed 6.74 sec | |
| Start 48: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate | |
| 40/100 Test #45: testcorenrn_deriv::coreneuron_gpu_offline .......................... Passed 5.12 sec | |
| Start 50: testcorenrn_deriv::coreneuron_cpu_offline::preparation | |
| 41/100 Test #47: testcorenrn_deriv::coreneuron_cpu_online ........................... Passed 4.22 sec | |
| 42/100 Test #50: testcorenrn_deriv::coreneuron_cpu_offline::preparation ............. Passed 2.21 sec | |
| Start 49: testcorenrn_deriv::coreneuron_cpu_offline | |
| 43/100 Test #48: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate .......... Passed 4.25 sec | |
| Start 52: testcorenrn_gf::neuron | |
| 44/100 Test #49: testcorenrn_deriv::coreneuron_cpu_offline .......................... Passed 2.44 sec | |
| Start 51: testcorenrn_deriv::compare_results | |
| 45/100 Test #51: testcorenrn_deriv::compare_results ................................. Passed 0.10 sec | |
| 46/100 Test #52: testcorenrn_gf::neuron ............................................. Passed 3.91 sec | |
| Start 53: testcorenrn_gf::coreneuron_gpu_online | |
| 47/100 Test #53: testcorenrn_gf::coreneuron_gpu_online .............................. Passed 14.62 sec | |
| Start 54: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate | |
| 48/100 Test #54: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate ............. Passed 14.65 sec | |
| Start 56: testcorenrn_gf::coreneuron_gpu_offline::preparation | |
| 49/100 Test #56: testcorenrn_gf::coreneuron_gpu_offline::preparation ................ Passed 3.11 sec | |
| Start 55: testcorenrn_gf::coreneuron_gpu_offline | |
| 50/100 Test #55: testcorenrn_gf::coreneuron_gpu_offline ............................. Passed 11.41 sec | |
| Start 57: testcorenrn_gf::coreneuron_cpu_online | |
| 51/100 Test #57: testcorenrn_gf::coreneuron_cpu_online .............................. Passed 11.42 sec | |
| Start 58: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate | |
| 52/100 Test #35: testcorenrn_bbcore::coreneuron_gpu_offline ......................... Passed 101.69 sec | |
| Start 41: testcorenrn_bbcore::compare_results | |
| 53/100 Test #41: testcorenrn_bbcore::compare_results ................................ Passed 0.10 sec | |
| Start 60: testcorenrn_gf::coreneuron_cpu_offline::preparation | |
| 54/100 Test #58: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ............. Passed 13.72 sec | |
| Start 62: testcorenrn_patstim::neuron | |
| 55/100 Test #62: testcorenrn_patstim::neuron ........................................ Passed 2.91 sec | |
| Start 64: testcorenrn_patstim::coreneuron_gpu_offline::preparation | |
| 56/100 Test #64: testcorenrn_patstim::coreneuron_gpu_offline::preparation ........... Passed 1.90 sec | |
| Start 63: testcorenrn_patstim::coreneuron_gpu_offline | |
| 57/100 Test #63: testcorenrn_patstim::coreneuron_gpu_offline ........................ Passed 3.91 sec | |
| Start 66: testcorenrn_patstim::coreneuron_cpu_offline::preparation | |
| 58/100 Test #66: testcorenrn_patstim::coreneuron_cpu_offline::preparation ........... Passed 2.91 sec | |
| Start 65: testcorenrn_patstim::coreneuron_cpu_offline | |
| 59/100 Test #65: testcorenrn_patstim::coreneuron_cpu_offline ........................ Passed 7.41 sec | |
| Start 67: testcorenrn_patstim::compare_results | |
| 60/100 Test #67: testcorenrn_patstim::compare_results ............................... Passed 0.40 sec | |
| Start 68: testcorenrn_vecplay::neuron | |
| 61/100 Test #68: testcorenrn_vecplay::neuron ........................................ Passed 2.91 sec | |
| Start 69: testcorenrn_vecplay::coreneuron_gpu_online | |
| 62/100 Test #69: testcorenrn_vecplay::coreneuron_gpu_online ......................... Passed 14.42 sec | |
| Start 70: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate | |
| 63/100 Test #60: testcorenrn_gf::coreneuron_cpu_offline::preparation ................ Passed 43.88 sec | |
| Start 59: testcorenrn_gf::coreneuron_cpu_offline | |
| 64/100 Test #59: testcorenrn_gf::coreneuron_cpu_offline ............................. Passed 11.96 sec | |
| Start 61: testcorenrn_gf::compare_results | |
| 65/100 Test #61: testcorenrn_gf::compare_results .................................... Passed 0.07 sec | |
| Start 72: testcorenrn_vecplay::coreneuron_gpu_offline::preparation | |
| 66/100 Test #72: testcorenrn_vecplay::coreneuron_gpu_offline::preparation ........... Passed 3.41 sec | |
| Start 71: testcorenrn_vecplay::coreneuron_gpu_offline | |
| 67/100 Test #70: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate ........ Passed 18.85 sec | |
| Start 73: testcorenrn_vecplay::coreneuron_cpu_online | |
| 68/100 Test #71: testcorenrn_vecplay::coreneuron_gpu_offline ........................ Passed 10.94 sec | |
| Start 74: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate | |
| 69/100 Test #73: testcorenrn_vecplay::coreneuron_cpu_online ......................... Passed 10.53 sec | |
| Start 76: testcorenrn_vecplay::coreneuron_cpu_offline::preparation | |
| 70/100 Test #76: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ........... Passed 3.11 sec | |
| Start 75: testcorenrn_vecplay::coreneuron_cpu_offline | |
| 71/100 Test #74: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........ Passed 12.32 sec | |
| 72/100 Test #75: testcorenrn_vecplay::coreneuron_cpu_offline ........................ Passed 6.91 sec | |
| Start 77: testcorenrn_vecplay::compare_results | |
| 73/100 Test #77: testcorenrn_vecplay::compare_results ............................... Passed 0.07 sec | |
| Start 78: testcorenrn_vecevent::neuron | |
| 74/100 Test #78: testcorenrn_vecevent::neuron ....................................... Passed 2.30 sec | |
| Start 79: testcorenrn_vecevent::coreneuron_gpu_online | |
| 75/100 Test #27: external_ringtest::coreneuron_gpu_mpi .............................. Passed 219.10 sec | |
| Start 31: external_ringtest::compare_results | |
| 76/100 Test #31: external_ringtest::compare_results ................................. Passed 0.20 sec | |
| 77/100 Test #79: testcorenrn_vecevent::coreneuron_gpu_online ........................ Passed 9.31 sec | |
| Start 80: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate | |
| 78/100 Test #80: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate ....... Passed 5.35 sec | |
| Start 82: testcorenrn_vecevent::coreneuron_gpu_offline::preparation | |
| 79/100 Test #82: testcorenrn_vecevent::coreneuron_gpu_offline::preparation .......... Passed 4.45 sec | |
| Start 81: testcorenrn_vecevent::coreneuron_gpu_offline | |
| 80/100 Test #5: rxdmod_tests::rxd_tests ............................................ Passed 270.53 sec | |
| 81/100 Test #6: rxdmod_tests::rxd_mpi_tests ........................................ Passed 272.89 sec | |
| Start 83: testcorenrn_vecevent::coreneuron_cpu_online | |
| 82/100 Test #81: testcorenrn_vecevent::coreneuron_gpu_offline ....................... Passed 5.28 sec | |
| Start 84: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate | |
| 83/100 Test #83: testcorenrn_vecevent::coreneuron_cpu_online ........................ Passed 3.06 sec | |
| Start 86: testcorenrn_vecevent::coreneuron_cpu_offline::preparation | |
| 84/100 Test #84: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ....... Passed 3.38 sec | |
| Start 88: testcorenrn_watch::neuron | |
| Start 89: testcorenrn_watch::coreneuron_gpu_online | |
| 85/100 Test #86: testcorenrn_vecevent::coreneuron_cpu_offline::preparation .......... Passed 1.78 sec | |
| Start 85: testcorenrn_vecevent::coreneuron_cpu_offline | |
| 86/100 Test #88: testcorenrn_watch::neuron .......................................... Passed 1.81 sec | |
| Start 90: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate | |
| 87/100 Test #85: testcorenrn_vecevent::coreneuron_cpu_offline ....................... Passed 3.82 sec | |
| Start 87: testcorenrn_vecevent::compare_results | |
| Start 92: testcorenrn_watch::coreneuron_gpu_offline::preparation | |
| 88/100 Test #87: testcorenrn_vecevent::compare_results .............................. Passed 0.09 sec | |
| 89/100 Test #89: testcorenrn_watch::coreneuron_gpu_online ........................... Passed 4.81 sec | |
| Start 93: testcorenrn_watch::coreneuron_cpu_online | |
| Start 94: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate | |
| 90/100 Test #90: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate .......... Passed 4.62 sec | |
| 91/100 Test #92: testcorenrn_watch::coreneuron_gpu_offline::preparation ............. Passed 2.09 sec | |
| Start 91: testcorenrn_watch::coreneuron_gpu_offline | |
| Start 96: testcorenrn_watch::coreneuron_cpu_offline::preparation | |
| 92/100 Test #96: testcorenrn_watch::coreneuron_cpu_offline::preparation ............. Passed 2.27 sec | |
| Start 95: testcorenrn_watch::coreneuron_cpu_offline | |
| 93/100 Test #93: testcorenrn_watch::coreneuron_cpu_online ........................... Passed 5.19 sec | |
| 94/100 Test #94: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate .......... Passed 5.32 sec | |
| Start 98: testcorenrn_netstimdirect::direct_netstimdirect | |
| Start 99: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate | |
| 95/100 Test #91: testcorenrn_watch::coreneuron_gpu_offline .......................... Passed 4.93 sec | |
| 96/100 Test #95: testcorenrn_watch::coreneuron_cpu_offline .......................... Passed 3.53 sec | |
| Start 97: testcorenrn_watch::compare_results | |
| 97/100 Test #97: testcorenrn_watch::compare_results ................................. Passed 0.20 sec | |
| 98/100 Test #98: testcorenrn_netstimdirect::direct_netstimdirect .................... Passed 4.70 sec | |
| 99/100 Test #99: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ... Passed 4.85 sec | |
| Start 100: testcorenrn_netstimdirect::compare_results | |
| 100/100 Test #100: testcorenrn_netstimdirect::compare_results ......................... Passed 0.07 sec | |
| 100% tests passed, 0 tests failed out of 100 | |
| Total Test time (real) = 292.56 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.8.3 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1631143234:step_script [0Ksection_start:1631143234:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m | |
| [0;m[32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=192216 revision[0;m=7a6612da version[0;m=13.12.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=56381 responseStatus[0;m=201 Created token[0;m=DMheDZMA | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=192241 revision[0;m=7a6612da version[0;m=13.12.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=56381 responseStatus[0;m=201 Created token[0;m=DMheDZMA | |
| section_end:1631143236:upload_artifacts_on_success [0Ksection_start:1631143236:cleanup_file_variables [0K[0K[36;1mCleaning up file based variables[0;m | |
| [0;msection_end:1631143237:cleanup_file_variables [0K[32;1mJob succeeded | |
| [0;m |
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| [0KRunning with gitlab-runner 13.12.0 (7a6612da) | |
| [0;m[0K on BB5 map runner pnPo3yJy | |
| [0;msection_start:1631140982:resolve_secrets [0K[0K[36;1mResolving secrets[0;m | |
| [0;msection_end:1631140982:resolve_secrets [0Ksection_start:1631140982:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m | |
| [0;m[0KUsing Custom executor with driver BB5 PROD runner v0.0.3... | |
| [0;mBB5 PROD runner running on bbpv1.epfl.ch, version 13.12.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor235591172, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 16159, build ref fca92bfe02a7964cdd27baaaf5dee2c6abcbcbba, job ID 56379 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P16159 | |
| A slurm job will be created with name GL_J56379_PROD_P112_CP0_C0 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job eligible for phase1 and phase2, setting partition=prod_p2,prod_p1 | |
| Submitted batch job 2543317 | |
| job state: R | |
| section_end:1631141087:prepare_executor [0Ksection_start:1631141087:prepare_script [0K[0K[36;1mPreparing environment[0;m | |
| [0;mRunning on r4i5n19 via bbpv1.epfl.ch... | |
| section_end:1631141088:prepare_script [0Ksection_start:1631141088:get_sources [0K[0K[36;1mGetting source from Git repository[0;m | |
| [0;m[32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1631141089:get_sources [0Ksection_start:1631141089:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m | |
| [0;m[32;1mDownloading artifacts for build:neuron+nmodl:intel (56375)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=93921 revision[0;m=7a6612da version[0;m=13.12.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=56375 responseStatus[0;m=200 OK token[0;m=zQiEQ8kh | |
| section_end:1631141091:download_artifacts [0Ksection_start:1631141091:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m | |
| [0;m[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426 | |
| [0;m[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env /${SPACK_INSTALLED_HASH} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r5i1n20 | |
| Build name: Linux-icpc | |
| Create new tag: 20210908-2245 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P16159/56375/spack-build/spack-stage-neuron-develop-evyfylxt6tzfu4cdqoxauxxfc45stj6s/spack-build-evyfylx | |
| Start 1: testneuron | |
| Start 2: ringtest | |
| Start 3: connect_dend | |
| Start 4: pynrn_tests::basic_tests | |
| Start 5: rxdmod_tests::rxd_tests | |
| Start 6: rxdmod_tests::rxd_mpi_tests | |
| Start 7: parallel_tests | |
| Start 8: parallel_partrans | |
| 1/83 Test #1: testneuron ......................................................... Passed 0.43 sec | |
| 2/83 Test #3: connect_dend ....................................................... Passed 0.52 sec | |
| Start 9: parallel_bas | |
| Start 10: coreneuron_modtests::direct_py | |
| 3/83 Test #2: ringtest ........................................................... Passed 1.44 sec | |
| Start 11: coreneuron_modtests::direct_hoc | |
| 4/83 Test #8: parallel_partrans .................................................. Passed 4.45 sec | |
| Start 12: coreneuron_modtests::spikes_py | |
| 5/83 Test #11: coreneuron_modtests::direct_hoc .................................... Passed 4.55 sec | |
| Start 13: coreneuron_modtests::spikes_file_mode_py | |
| 6/83 Test #7: parallel_tests ..................................................... Passed 7.48 sec | |
| Start 14: coreneuron_modtests::fornetcon_py | |
| 7/83 Test #4: pynrn_tests::basic_tests ........................................... Passed 12.00 sec | |
| Start 15: coreneuron_modtests::datareturn_py | |
| 8/83 Test #9: parallel_bas ....................................................... Passed 12.49 sec | |
| Start 16: coreneuron_modtests::test_units_py | |
| 9/83 Test #12: coreneuron_modtests::spikes_py ..................................... Passed 9.25 sec | |
| 10/83 Test #10: coreneuron_modtests::direct_py ..................................... Passed 13.09 sec | |
| Start 17: coreneuron_modtests::test_netmove_py | |
| Start 18: coreneuron_modtests::test_watchrange_py | |
| 11/83 Test #14: coreneuron_modtests::fornetcon_py .................................. Passed 8.33 sec | |
| Start 19: coreneuron_modtests::test_natrans_py | |
| 12/83 Test #13: coreneuron_modtests::spikes_file_mode_py ........................... Passed 13.45 sec | |
| 13/83 Test #15: coreneuron_modtests::datareturn_py ................................. Passed 10.83 sec | |
| Start 20: coreneuron_modtests::spikes_mpi_py | |
| 14/83 Test #16: coreneuron_modtests::test_units_py ................................. Passed 11.27 sec | |
| 15/83 Test #18: coreneuron_modtests::test_watchrange_py ............................ Passed 11.36 sec | |
| Start 21: coreneuron_modtests::spikes_mpi_file_mode_py | |
| 16/83 Test #19: coreneuron_modtests::test_natrans_py ............................... Passed 10.46 sec | |
| Start 22: external_ringtest::neuron | |
| 17/83 Test #17: coreneuron_modtests::test_netmove_py ............................... Passed 12.68 sec | |
| 18/83 Test #22: external_ringtest::neuron .......................................... Passed 6.61 sec | |
| Start 23: external_ringtest::neuron_mpi | |
| 19/83 Test #20: coreneuron_modtests::spikes_mpi_py ................................. Passed 12.27 sec | |
| Start 24: external_ringtest::coreneuron_cpu_mpi | |
| 20/83 Test #23: external_ringtest::neuron_mpi ...................................... Passed 4.26 sec | |
| 21/83 Test #21: coreneuron_modtests::spikes_mpi_file_mode_py ....................... Passed 11.77 sec | |
| Start 26: external_ringtest::coreneuron_cpu_mpi_offline::preparation | |
| Start 27: external_ringtest::coreneuron_cpu_mpi_threads | |
| 22/83 Test #24: external_ringtest::coreneuron_cpu_mpi .............................. Passed 3.37 sec | |
| Start 29: testcorenrn_bbcore::neuron | |
| Start 30: testcorenrn_bbcore::coreneuron_cpu_online | |
| 23/83 Test #29: testcorenrn_bbcore::neuron ......................................... Passed 2.01 sec | |
| 24/83 Test #30: testcorenrn_bbcore::coreneuron_cpu_online .......................... Passed 2.50 sec | |
| Start 31: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate | |
| Start 33: testcorenrn_bbcore::coreneuron_cpu_offline::preparation | |
| 25/83 Test #27: external_ringtest::coreneuron_cpu_mpi_threads ...................... Passed 5.02 sec | |
| 26/83 Test #26: external_ringtest::coreneuron_cpu_mpi_offline::preparation ......... Passed 5.03 sec | |
| Start 25: external_ringtest::coreneuron_cpu_mpi_offline | |
| Start 35: testcorenrn_deriv::neuron | |
| Start 36: testcorenrn_deriv::coreneuron_cpu_online | |
| 27/83 Test #33: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............ Passed 1.82 sec | |
| 28/83 Test #35: testcorenrn_deriv::neuron .......................................... Passed 1.71 sec | |
| Start 32: testcorenrn_bbcore::coreneuron_cpu_offline | |
| Start 37: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate | |
| 29/83 Test #31: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ......... Passed 3.43 sec | |
| 30/83 Test #36: testcorenrn_deriv::coreneuron_cpu_online ........................... Passed 3.01 sec | |
| Start 39: testcorenrn_deriv::coreneuron_cpu_offline::preparation | |
| 31/83 Test #37: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate .......... Passed 1.22 sec | |
| 32/83 Test #25: external_ringtest::coreneuron_cpu_mpi_offline ...................... Passed 3.53 sec | |
| Start 28: external_ringtest::compare_results | |
| Start 41: testcorenrn_gf::neuron | |
| 33/83 Test #32: testcorenrn_bbcore::coreneuron_cpu_offline ......................... Passed 1.63 sec | |
| 34/83 Test #28: external_ringtest::compare_results ................................. Passed 0.31 sec | |
| Start 34: testcorenrn_bbcore::compare_results | |
| Start 42: testcorenrn_gf::coreneuron_cpu_online | |
| 35/83 Test #34: testcorenrn_bbcore::compare_results ................................ Passed 0.41 sec | |
| 36/83 Test #39: testcorenrn_deriv::coreneuron_cpu_offline::preparation ............. Passed 1.55 sec | |
| Start 38: testcorenrn_deriv::coreneuron_cpu_offline | |
| 37/83 Test #41: testcorenrn_gf::neuron ............................................. Passed 2.74 sec | |
| Start 43: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate | |
| 38/83 Test #38: testcorenrn_deriv::coreneuron_cpu_offline .......................... Passed 1.61 sec | |
| Start 40: testcorenrn_deriv::compare_results | |
| 39/83 Test #40: testcorenrn_deriv::compare_results ................................. Passed 0.20 sec | |
| 40/83 Test #42: testcorenrn_gf::coreneuron_cpu_online .............................. Passed 3.04 sec | |
| Start 45: testcorenrn_gf::coreneuron_cpu_offline::preparation | |
| Start 47: testcorenrn_patstim::neuron | |
| 41/83 Test #47: testcorenrn_patstim::neuron ........................................ Passed 2.41 sec | |
| Start 49: testcorenrn_patstim::coreneuron_cpu_offline::preparation | |
| 42/83 Test #45: testcorenrn_gf::coreneuron_cpu_offline::preparation ................ Passed 2.69 sec | |
| Start 44: testcorenrn_gf::coreneuron_cpu_offline | |
| 43/83 Test #43: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ............. Passed 3.93 sec | |
| Start 51: testcorenrn_vecplay::neuron | |
| 44/83 Test #49: testcorenrn_patstim::coreneuron_cpu_offline::preparation ........... Passed 1.82 sec | |
| Start 48: testcorenrn_patstim::coreneuron_cpu_offline | |
| 45/83 Test #44: testcorenrn_gf::coreneuron_cpu_offline ............................. Passed 2.05 sec | |
| 46/83 Test #51: testcorenrn_vecplay::neuron ........................................ Passed 1.68 sec | |
| Start 46: testcorenrn_gf::compare_results | |
| Start 52: testcorenrn_vecplay::coreneuron_cpu_online | |
| 47/83 Test #46: testcorenrn_gf::compare_results .................................... Passed 0.31 sec | |
| Start 53: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate | |
| 48/83 Test #48: testcorenrn_patstim::coreneuron_cpu_offline ........................ Passed 1.69 sec | |
| Start 50: testcorenrn_patstim::compare_results | |
| 49/83 Test #50: testcorenrn_patstim::compare_results ............................... Passed 0.40 sec | |
| Start 55: testcorenrn_vecplay::coreneuron_cpu_offline::preparation | |
| 50/83 Test #52: testcorenrn_vecplay::coreneuron_cpu_online ......................... Passed 2.42 sec | |
| 51/83 Test #55: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ........... Passed 2.96 sec | |
| Start 54: testcorenrn_vecplay::coreneuron_cpu_offline | |
| 52/83 Test #53: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........ Passed 3.77 sec | |
| Start 57: testcorenrn_vecevent::neuron | |
| 53/83 Test #54: testcorenrn_vecplay::coreneuron_cpu_offline ........................ Passed 1.81 sec | |
| Start 56: testcorenrn_vecplay::compare_results | |
| 54/83 Test #56: testcorenrn_vecplay::compare_results ............................... Passed 0.30 sec | |
| 55/83 Test #57: testcorenrn_vecevent::neuron ....................................... Passed 3.22 sec | |
| Start 58: testcorenrn_vecevent::coreneuron_cpu_online | |
| 56/83 Test #58: testcorenrn_vecevent::coreneuron_cpu_online ........................ Passed 24.83 sec | |
| Start 59: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate | |
| 57/83 Test #5: rxdmod_tests::rxd_tests ............................................ Passed 92.37 sec | |
| 58/83 Test #59: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ....... Passed 5.85 sec | |
| Start 61: testcorenrn_vecevent::coreneuron_cpu_offline::preparation | |
| Start 63: testcorenrn_watch::neuron | |
| 59/83 Test #61: testcorenrn_vecevent::coreneuron_cpu_offline::preparation .......... Passed 2.31 sec | |
| Start 60: testcorenrn_vecevent::coreneuron_cpu_offline | |
| 60/83 Test #63: testcorenrn_watch::neuron .......................................... Passed 2.31 sec | |
| Start 64: testcorenrn_watch::coreneuron_cpu_online | |
| 61/83 Test #60: testcorenrn_vecevent::coreneuron_cpu_offline ....................... Passed 1.58 sec | |
| Start 62: testcorenrn_vecevent::compare_results | |
| Start 65: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate | |
| Start 67: testcorenrn_watch::coreneuron_cpu_offline::preparation | |
| 62/83 Test #62: testcorenrn_vecevent::compare_results .............................. Passed 0.41 sec | |
| 63/83 Test #64: testcorenrn_watch::coreneuron_cpu_online ........................... Passed 2.19 sec | |
| Start 69: testcorenrn_conc::neuron | |
| Start 70: testcorenrn_conc::coreneuron_cpu_online | |
| Start 71: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate | |
| 64/83 Test #67: testcorenrn_watch::coreneuron_cpu_offline::preparation ............. Passed 1.77 sec | |
| Start 66: testcorenrn_watch::coreneuron_cpu_offline | |
| 65/83 Test #69: testcorenrn_conc::neuron ........................................... Passed 2.37 sec | |
| Start 73: testcorenrn_conc::coreneuron_cpu_offline::preparation | |
| 66/83 Test #70: testcorenrn_conc::coreneuron_cpu_online ............................ Passed 3.37 sec | |
| Start 75: testcorenrn_kin::neuron | |
| 67/83 Test #66: testcorenrn_watch::coreneuron_cpu_offline .......................... Passed 2.45 sec | |
| 68/83 Test #71: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ........... Passed 3.64 sec | |
| Start 76: testcorenrn_kin::coreneuron_cpu_online | |
| Start 77: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate | |
| Start 79: testcorenrn_kin::coreneuron_cpu_offline::preparation | |
| 69/83 Test #65: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate .......... Passed 4.67 sec | |
| Start 68: testcorenrn_watch::compare_results | |
| 70/83 Test #68: testcorenrn_watch::compare_results ................................. Passed 0.20 sec | |
| 71/83 Test #73: testcorenrn_conc::coreneuron_cpu_offline::preparation .............. Passed 1.79 sec | |
| Start 72: testcorenrn_conc::coreneuron_cpu_offline | |
| Start 81: testcorenrn_netstimdirect::direct_netstimdirect | |
| 72/83 Test #75: testcorenrn_kin::neuron ............................................ Passed 1.90 sec | |
| 73/83 Test #79: testcorenrn_kin::coreneuron_cpu_offline::preparation ............... Passed 2.01 sec | |
| Start 78: testcorenrn_kin::coreneuron_cpu_offline | |
| 74/83 Test #72: testcorenrn_conc::coreneuron_cpu_offline ........................... Passed 1.81 sec | |
| Start 74: testcorenrn_conc::compare_results | |
| 75/83 Test #76: testcorenrn_kin::coreneuron_cpu_online ............................. Passed 3.53 sec | |
| 76/83 Test #74: testcorenrn_conc::compare_results .................................. Passed 0.20 sec | |
| Start 82: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate | |
| 77/83 Test #77: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ............ Passed 3.93 sec | |
| 78/83 Test #78: testcorenrn_kin::coreneuron_cpu_offline ............................ Passed 2.01 sec | |
| 79/83 Test #81: testcorenrn_netstimdirect::direct_netstimdirect .................... Passed 3.21 sec | |
| Start 80: testcorenrn_kin::compare_results | |
| 80/83 Test #80: testcorenrn_kin::compare_results ................................... Passed 0.10 sec | |
| 81/83 Test #82: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ... Passed 2.21 sec | |
| Start 83: testcorenrn_netstimdirect::compare_results | |
| 82/83 Test #83: testcorenrn_netstimdirect::compare_results ......................... Passed 0.10 sec | |
| 83/83 Test #6: rxdmod_tests::rxd_mpi_tests ........................................ Passed 110.79 sec | |
| 100% tests passed, 0 tests failed out of 83 | |
| Total Test time (real) = 110.85 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.8.3 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1631141221:step_script [0Ksection_start:1631141221:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m | |
| [0;m[32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=98655 revision[0;m=7a6612da version[0;m=13.12.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=56379 responseStatus[0;m=201 Created token[0;m=S_kgWQ5h | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=98680 revision[0;m=7a6612da version[0;m=13.12.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=56379 responseStatus[0;m=201 Created token[0;m=S_kgWQ5h | |
| section_end:1631141223:upload_artifacts_on_success [0Ksection_start:1631141223:cleanup_file_variables [0K[0K[36;1mCleaning up file based variables[0;m | |
| [0;msection_end:1631141224:cleanup_file_variables [0K[32;1mJob succeeded | |
| [0;m |
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