Created
April 13, 2022 10:47
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Logfiles for GitLab pipeline https://bbpgitlab.epfl.ch/hpc/coreneuron/-/pipelines/48472 (:white_check_mark:) running on GitHub PR BlueBrain/CoreNeuron#797.
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1649843398:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1649843398:resolve_secrets [0Ksection_start:1649843398:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor018087411, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 48472, build ref 9a466a6e2a1c807e4d6045f3fc0b1fbaf51370b6, job ID 211023 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J211023_PROD_P112_CP7_C16 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 379124 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J211023_PROD_P112_CP7_C16 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --ntasks=2 --jobid=379124 --cpus-per-task=8 --mem=76G | |
| section_end:1649843399:prepare_executor [0Ksection_start:1649843399:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r2i2n21 via bbpv1.epfl.ch... | |
| section_end:1649843402:prepare_script [0Ksection_start:1649843402:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1649843403:get_sources [0Ksection_start:1649843403:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:coreneuron:mod2c:intel-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=30227 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1649843407:restore_cache [0Ksection_start:1649843407:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for spack_setup (211016)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=30311 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=211016 responseStatus[0;m=200 OK token[0;m=EkaigVme | |
| section_end:1649843407:download_artifacts [0Ksection_start:1649843407:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211023/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211023/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211023/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211023/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211023/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access [email protected] (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access [email protected] (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472/J211023_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = [email protected]:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = [email protected]: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron%intel +tests~legacy-unit build_type=Debug | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be hsyhen5wbojr4dsx5rf32wndj3dpm5nb | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/379124/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/379124/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Apr 13 11:50:37 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.39 / 0.51 (75.50 %) | |
| Files: 6617 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'hsyhen5wbojr4dsx5rf32wndj3dpm5nb' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron%intel~legacy-unit+tests build_type=Debug | |
| Concretized | |
| -------------------------------- | |
| - hsyhen5 coreneuron@develop%[email protected]~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl~openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=Debug arch=linux-rhel7-skylake | |
| - dwdch6b ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] dl7pfht ^[email protected]%[email protected]+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| - z3q5f3x ^[email protected]%[email protected]~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| - s4ueg72 ^[email protected]%[email protected]+lex~nls arch=linux-rhel7-skylake | |
| [^] 3narjkw ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] nfrzrlo ^[email protected]%[email protected]~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ofveh3j ^[email protected]%[email protected]+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] xys6npz ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] e7w5nez ^[email protected]%[email protected]+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] wk3uenv ^[email protected]%[email protected]~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - 6ggc5yr ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] f27a7nn ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] gdhqypa ^[email protected]%[email protected]~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> [email protected] : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-dwdch6bmdeclr2novthsywtrryotawwz) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-dl7pfhtsvyaq3273gr2g3l5vr37eeydc) | |
| ==> [email protected] : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-z3q5f3xwpuibd3qbgdscqmu3efarbu42) | |
| ==> [email protected] : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-s4ueg72j7l6vkdyvfxj2tweo7v7s3otx) | |
| ==> [email protected] : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-3narjkwjh6i2jr3zl3g5wdjlqi52hkwh) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/pkgconf-1.8.0-xys6np | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-e7w5nezpwf572epfhbosqfzboztysout) | |
| ==> [email protected] : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-6ggc5yre7qddwxdjmn7sfptpdoiy4dtp) | |
| ==> [email protected] : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-f27a7nnhppeztxijpispnaedcfo2vjxi) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/spdlog-1.9.2-wk3uen | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/reportinglib-2.5.6-gdhqyp | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/hdf5-1.10.7-ofveh3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/libsonata-report-1.1-nfrzrl | |
| ==> Installing coreneuron-develop-hsyhen5wbojr4dsx5rf32wndj3dpm5nb | |
| ==> No binary for coreneuron-develop-hsyhen5wbojr4dsx5rf32wndj3dpm5nb found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472, but it is owned by 0 | |
| ==> No patches needed for coreneuron | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| ==> coreneuron: Successfully installed coreneuron-develop-hsyhen5wbojr4dsx5rf32wndj3dpm5nb | |
| Fetch: 4.60s. Build: 30.19s. Total: 34.79s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/software/install_intel-2021.4.0-skylake/coreneuron-develop-hsyhen | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/379124/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/379124/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Apr 13 11:51:56 2022 | |
| Hits: 109 / 116 (93.97 %) | |
| Direct: 91 / 116 (78.45 %) | |
| Preprocessed: 18 / 25 (72.00 %) | |
| Misses: 7 | |
| Direct: 25 | |
| Preprocessed: 7 | |
| Uncacheable: 18 | |
| Primary storage: | |
| Hits: 200 / 232 (86.21 %) | |
| Misses: 32 | |
| Cache size (GB): 0.38 / 0.51 (74.25 %) | |
| Files: 6631 | |
| Uncacheable: | |
| Called for linking: 15 | |
| No input file: 3 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-scipy/1.7.1 | |
| Autoloading py-numpy/1.19.5 | |
| Autoloading py-mpi4py/3.1.2 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.4.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1649843518:step_script [0Ksection_start:1649843518:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:coreneuron:mod2c:intel-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=32605 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Acoreneuron%3Amod2c%3Aintel-8[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1649843534:archive_cache [0Ksection_start:1649843534:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=32750 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=211023 responseStatus[0;m=201 Created token[0;m=SAThh_5K | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=32790 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=211023 responseStatus[0;m=201 Created token[0;m=SAThh_5K | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=32835 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=211023 responseStatus[0;m=201 Created token[0;m=SAThh_5K | |
| section_end:1649843536:upload_artifacts_on_success [0Ksection_start:1649843536:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1649843537:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1649843397:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1649843397:resolve_secrets [0Ksection_start:1649843397:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor062257241, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 48472, build ref 9a466a6e2a1c807e4d6045f3fc0b1fbaf51370b6, job ID 211020 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J211020_PROD_P112_CP6_C11 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 379123 | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J211020_PROD_P112_CP6_C11 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --ntasks=2 --jobid=379123 --cpus-per-task=8 --mem=76G | |
| section_end:1649843400:prepare_executor [0Ksection_start:1649843400:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r2i2n20 via bbpv1.epfl.ch... | |
| section_end:1649843403:prepare_script [0Ksection_start:1649843403:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1649843404:get_sources [0Ksection_start:1649843404:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:coreneuron:mod2c:nvhpc:acc:unified-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=231975 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1649843407:restore_cache [0Ksection_start:1649843407:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for spack_setup (211016)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=232495 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=211016 responseStatus[0;m=200 OK token[0;m=EkaigVme | |
| section_end:1649843408:download_artifacts [0Ksection_start:1649843408:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211020/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211020/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211020/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211020/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211020/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access [email protected] (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access [email protected] (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472/J211020_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = [email protected]:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = [email protected]: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron%nvhpc +gpu+unified+openmp+tests~legacy-unit build_type=RelWithDebInfo | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be knqybtff3rwigwjx34v3sgxt6qlziega | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/379123/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/379123/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Apr 13 11:50:38 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.26 / 0.51 (49.99 %) | |
| Files: 8156 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'knqybtff3rwigwjx34v3sgxt6qlziega' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron%nvhpc+gpu~legacy-unit+openmp+tests+unified build_type=RelWithDebInfo | |
| Concretized | |
| -------------------------------- | |
| - knqybtf coreneuron@develop%[email protected]~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl+openmp~profile+report+shared~sympy~sympyopt+tests+unified build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - 6s6wcfe ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] vn2t5vi ^[email protected]%[email protected]+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| - ucwiakr ^[email protected]%[email protected]~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [^] gi5x2dn ^[email protected]%[email protected]~allow-unsupported-compilers~dev arch=linux-rhel7-skylake | |
| - ajxdymq ^[email protected]%[email protected]+lex~nls arch=linux-rhel7-skylake | |
| [^] pjmdwuu ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] vtyvxbi ^[email protected]%[email protected]~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] tbfoeg7 ^[email protected]%[email protected]+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 6dfyugs ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] h7lotu6 ^[email protected]%[email protected]+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] snd2rt6 ^[email protected]%[email protected]~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - cp3ofsp ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] f62u3oh ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] bdkvweu ^[email protected]%[email protected]~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> [email protected] : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-6s6wcfeanp2mkdib4c3n3ivkcuosopgm) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-vn2t5viljvtb5wyfhgmx57txyeiznxo4) | |
| ==> [email protected] : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-ucwiakreeghdgbo22kbqqhgnnlwxqtnn) | |
| ==> [email protected] : has external module in ['cuda/11.6.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cuda-11.6.1-ngetva (external cuda-11.6.1-gi5x2dn47i7nv76flbq7aatllxpaqmjp) | |
| ==> [email protected] : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-ajxdymqhnzqgeuhvk5nu5zfymzq35n6i) | |
| ==> [email protected] : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-pjmdwuu36ioiwqyrg6lrj7nrq3waqjj2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/pkgconf-1.8.0-6dfyug | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-h7lotu6jszcvumwucry2y5jnhvxw5x2d) | |
| ==> [email protected] : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-cp3ofspgkdqaqih5vrhotmdwvkozfswp) | |
| ==> [email protected] : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-f62u3ohchswt5q2b63chawohzqrl6wvy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/spdlog-1.9.2-snd2rt | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/reportinglib-2.5.6-bdkvwe | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/hdf5-1.10.7-tbfoeg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/libsonata-report-1.1-vtyvxb | |
| ==> Installing coreneuron-develop-knqybtff3rwigwjx34v3sgxt6qlziega | |
| ==> No binary for coreneuron-develop-knqybtff3rwigwjx34v3sgxt6qlziega found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472, but it is owned by 0 | |
| ==> No patches needed for coreneuron | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| ==> coreneuron: Successfully installed coreneuron-develop-knqybtff3rwigwjx34v3sgxt6qlziega | |
| Fetch: 3.79s. Build: 1m 29.23s. Total: 1m 33.02s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/software/install_nvhpc-22.3-skylake/coreneuron-develop-knqybt | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/379123/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/379123/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Apr 13 11:53:18 2022 | |
| Hits: 109 / 119 (91.60 %) | |
| Direct: 91 / 119 (76.47 %) | |
| Preprocessed: 18 / 28 (64.29 %) | |
| Misses: 10 | |
| Direct: 28 | |
| Preprocessed: 10 | |
| Uncacheable: 19 | |
| Primary storage: | |
| Hits: 200 / 238 (84.03 %) | |
| Misses: 38 | |
| Cache size (GB): 0.25 / 0.51 (48.65 %) | |
| Files: 8176 | |
| Uncacheable: | |
| Called for linking: 16 | |
| No input file: 3 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-scipy/1.7.1 | |
| Autoloading py-numpy/1.19.5 | |
| Autoloading py-mpi4py/3.1.2 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.4.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1649843604:step_script [0Ksection_start:1649843604:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:coreneuron:mod2c:nvhpc:acc:unified-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=241845 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Acoreneuron%3Amod2c%3Anvhpc%3Aacc%3Aunified-8[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1649843615:archive_cache [0Ksection_start:1649843615:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=242175 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=211020 responseStatus[0;m=201 Created token[0;m=ihHsmuMo | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=242218 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=211020 responseStatus[0;m=201 Created token[0;m=ihHsmuMo | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=242259 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=211020 responseStatus[0;m=201 Created token[0;m=ihHsmuMo | |
| section_end:1649843617:upload_artifacts_on_success [0Ksection_start:1649843617:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1649843618:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1649843397:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1649843397:resolve_secrets [0Ksection_start:1649843397:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor072682831, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 48472, build ref 9a466a6e2a1c807e4d6045f3fc0b1fbaf51370b6, job ID 211019 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J211019_PROD_P112_CP4_C3 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 379122 | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J211019_PROD_P112_CP4_C3 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --ntasks=2 --jobid=379122 --cpus-per-task=8 --mem=76G | |
| section_end:1649843399:prepare_executor [0Ksection_start:1649843399:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r2i2n20 via bbpv1.epfl.ch... | |
| section_end:1649843403:prepare_script [0Ksection_start:1649843403:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1649843404:get_sources [0Ksection_start:1649843404:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:coreneuron:mod2c:nvhpc:acc-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=231924 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1649843407:restore_cache [0Ksection_start:1649843407:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for spack_setup (211016)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=232557 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=211016 responseStatus[0;m=200 OK token[0;m=EkaigVme | |
| section_end:1649843408:download_artifacts [0Ksection_start:1649843408:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211019/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211019/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211019/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211019/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211019/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access [email protected] (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access [email protected] (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472/J211019_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = [email protected]:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = [email protected]: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron%nvhpc +gpu+openmp+tests~legacy-unit build_type=RelWithDebInfo | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be myaj5gmcll4sywf66372ze5qfubwzr3s | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/379122/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/379122/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Apr 13 11:50:39 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.29 / 0.51 (57.10 %) | |
| Files: 9522 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'myaj5gmcll4sywf66372ze5qfubwzr3s' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron%nvhpc+gpu~legacy-unit+openmp+tests build_type=RelWithDebInfo | |
| Concretized | |
| -------------------------------- | |
| - myaj5gm coreneuron@develop%[email protected]~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl+openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - 6s6wcfe ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] vn2t5vi ^[email protected]%[email protected]+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| - ucwiakr ^[email protected]%[email protected]~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [^] gi5x2dn ^[email protected]%[email protected]~allow-unsupported-compilers~dev arch=linux-rhel7-skylake | |
| - ajxdymq ^[email protected]%[email protected]+lex~nls arch=linux-rhel7-skylake | |
| [^] pjmdwuu ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] vtyvxbi ^[email protected]%[email protected]~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] tbfoeg7 ^[email protected]%[email protected]+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 6dfyugs ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] h7lotu6 ^[email protected]%[email protected]+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] snd2rt6 ^[email protected]%[email protected]~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - cp3ofsp ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] f62u3oh ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] bdkvweu ^[email protected]%[email protected]~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> [email protected] : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-6s6wcfeanp2mkdib4c3n3ivkcuosopgm) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-vn2t5viljvtb5wyfhgmx57txyeiznxo4) | |
| ==> [email protected] : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-ucwiakreeghdgbo22kbqqhgnnlwxqtnn) | |
| ==> [email protected] : has external module in ['cuda/11.6.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cuda-11.6.1-ngetva (external cuda-11.6.1-gi5x2dn47i7nv76flbq7aatllxpaqmjp) | |
| ==> [email protected] : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-ajxdymqhnzqgeuhvk5nu5zfymzq35n6i) | |
| ==> [email protected] : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-pjmdwuu36ioiwqyrg6lrj7nrq3waqjj2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/pkgconf-1.8.0-6dfyug | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-h7lotu6jszcvumwucry2y5jnhvxw5x2d) | |
| ==> [email protected] : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-cp3ofspgkdqaqih5vrhotmdwvkozfswp) | |
| ==> [email protected] : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-f62u3ohchswt5q2b63chawohzqrl6wvy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/spdlog-1.9.2-snd2rt | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/reportinglib-2.5.6-bdkvwe | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/hdf5-1.10.7-tbfoeg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/libsonata-report-1.1-vtyvxb | |
| ==> Installing coreneuron-develop-myaj5gmcll4sywf66372ze5qfubwzr3s | |
| ==> No binary for coreneuron-develop-myaj5gmcll4sywf66372ze5qfubwzr3s found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472, but it is owned by 0 | |
| ==> No patches needed for coreneuron | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| ==> coreneuron: Successfully installed coreneuron-develop-myaj5gmcll4sywf66372ze5qfubwzr3s | |
| Fetch: 3.73s. Build: 1m 31.24s. Total: 1m 34.97s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/software/install_nvhpc-22.3-skylake/coreneuron-develop-myaj5g | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/379122/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/379122/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Apr 13 11:53:18 2022 | |
| Hits: 109 / 119 (91.60 %) | |
| Direct: 91 / 119 (76.47 %) | |
| Preprocessed: 18 / 28 (64.29 %) | |
| Misses: 10 | |
| Direct: 28 | |
| Preprocessed: 10 | |
| Uncacheable: 19 | |
| Primary storage: | |
| Hits: 200 / 238 (84.03 %) | |
| Misses: 38 | |
| Cache size (GB): 0.28 / 0.51 (55.54 %) | |
| Files: 9542 | |
| Uncacheable: | |
| Called for linking: 16 | |
| No input file: 3 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-scipy/1.7.1 | |
| Autoloading py-numpy/1.19.5 | |
| Autoloading py-mpi4py/3.1.2 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.4.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1649843604:step_script [0Ksection_start:1649843604:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:coreneuron:mod2c:nvhpc:acc-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=241903 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Acoreneuron%3Amod2c%3Anvhpc%3Aacc-8[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1649843618:archive_cache [0Ksection_start:1649843618:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=242373 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=211019 responseStatus[0;m=201 Created token[0;m=Qw7KHaR5 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=242416 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=211019 responseStatus[0;m=201 Created token[0;m=Qw7KHaR5 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=242467 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=211019 responseStatus[0;m=201 Created token[0;m=Qw7KHaR5 | |
| section_end:1649843620:upload_artifacts_on_success [0Ksection_start:1649843620:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1649843621:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1649843665:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1649843665:resolve_secrets [0Ksection_start:1649843665:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor463277424, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 48472, build ref 9a466a6e2a1c807e4d6045f3fc0b1fbaf51370b6, job ID 211024 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J211024_PROD_P112_CP9_C16 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 379214 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J211024_PROD_P112_CP9_C16 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --ntasks=2 --jobid=379214 --cpus-per-task=8 --mem=76G | |
| section_end:1649843667:prepare_executor [0Ksection_start:1649843667:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r5i0n34 via bbpv1.epfl.ch... | |
| section_end:1649843669:prepare_script [0Ksection_start:1649843669:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1649843670:get_sources [0Ksection_start:1649843670:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:coreneuron:nmodl:intel-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=27714 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1649843691:restore_cache [0Ksection_start:1649843691:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:nmodl (211018)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=28511 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=211018 responseStatus[0;m=200 OK token[0;m=8Sk4MWSK | |
| section_end:1649843692:download_artifacts [0Ksection_start:1649843692:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211024/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211024/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211024/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211024/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211024/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access [email protected] (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access [email protected] (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472/J211024_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = [email protected]:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = [email protected]: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron%intel +nmodl+tests~legacy-unit build_type=Debug ^hpe-mpi%gcc ^/7hnncpjzlyqwesmjkszimpr4c2qteocr | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be x2m7t35nswt5wf62dii5jjfu45snneyv | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/379214/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/379214/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Apr 13 11:56:10 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.41 / 0.51 (80.45 %) | |
| Files: 8107 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'x2m7t35nswt5wf62dii5jjfu45snneyv' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron%intel~legacy-unit+nmodl+tests build_type=Debug | |
| - ^hpe-mpi%gcc | |
| [+] ^nmodl@develop%[email protected]~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]~i18n arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]+libyaml arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - x2m7t35 coreneuron@develop%[email protected]~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=Debug arch=linux-rhel7-skylake | |
| - dwdch6b ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] dl7pfht ^[email protected]%[email protected]+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] 2qmvlfy ^[email protected]%[email protected]~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| - s4ueg72 ^[email protected]%[email protected]+lex~nls arch=linux-rhel7-skylake | |
| [^] hyunzkn ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] vutuzbn ^[email protected]%[email protected]~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] utj47fz ^[email protected]%[email protected]+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ihxi5rl ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] evtnqzd ^[email protected]%[email protected]+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] x72vveu ^[email protected]%[email protected]~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - 6ggc5yr ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [+] 7hnncpj ^nmodl@develop%[email protected]~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] onq3mhg ^[email protected]%[email protected]~i18n arch=linux-rhel7-skylake | |
| [^] 4ectow5 ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] 72xzp3v ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] 22arfs4 ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ascbeii ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] kvw3vhm ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] 7iyiygo ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] c7qvw2q ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] mazoiox ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] y7rfzdj ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] v4z3s5e ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] w4gddqx ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ci5oe5b ^[email protected]%[email protected]+libyaml arch=linux-rhel7-skylake | |
| [^] xj2wlac ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] xtett6q ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] dzb2mfs ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] 5fkun4i ^[email protected]%[email protected]~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> [email protected] : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-dwdch6bmdeclr2novthsywtrryotawwz) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-dl7pfhtsvyaq3273gr2g3l5vr37eeydc) | |
| ==> [email protected] : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-2qmvlfyylrv3t5ankluyr5cqey2nlfzd) | |
| ==> [email protected] : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-s4ueg72j7l6vkdyvfxj2tweo7v7s3otx) | |
| ==> [email protected] : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-hyunzknktdzri34bx26bupkvapehonql) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/pkgconf-1.8.0-ihxi5r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-evtnqzdtuvprwnbd2nljimpzywrhw4uo) | |
| ==> [email protected] : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-6ggc5yre7qddwxdjmn7sfptpdoiy4dtp) | |
| ==> [email protected] : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-72xzp3vgzh5b424qevkfruhs3ajzqbiy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libyaml-0.2.5-xj2wla | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/spdlog-1.9.2-x72vve | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/reportinglib-2.5.6-5fkun4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/hdf5-1.10.7-utj47f | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-markupsafe-2.0.1-4ectow | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-attrs-21.2.0-ascbei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-py-1.9.0-y7rfzd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-toml-0.10.2-w4gddq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpmath-1.1.0-dzb2mf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pluggy-0.13.0-mazoio | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-iniconfig-1.1.1-kvw3vh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-57.4.0-v4z3s5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyparsing-2.4.7-c7qvw2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyyaml-5.3.1-ci5oe5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libsonata-report-1.1-vutuzb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-jinja2-3.0.1-onq3mh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-sympy-1.8-xtett6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-packaging-21.0-7iyiyg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-6.2.4-22arfs | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/software/install_gcc-11.2.0-skylake/nmodl-develop-7hnncp | |
| ==> Installing coreneuron-develop-x2m7t35nswt5wf62dii5jjfu45snneyv | |
| ==> No binary for coreneuron-develop-x2m7t35nswt5wf62dii5jjfu45snneyv found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472, but it is owned by 0 | |
| ==> No patches needed for coreneuron | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| ==> coreneuron: Successfully installed coreneuron-develop-x2m7t35nswt5wf62dii5jjfu45snneyv | |
| Fetch: 4.32s. Build: 39.11s. Total: 43.43s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/software/install_intel-2021.4.0-skylake/coreneuron-develop-x2m7t3 | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/379214/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/379214/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Apr 13 11:59:09 2022 | |
| Hits: 88 / 95 (92.63 %) | |
| Direct: 79 / 95 (83.16 %) | |
| Preprocessed: 9 / 16 (56.25 %) | |
| Misses: 7 | |
| Direct: 16 | |
| Preprocessed: 7 | |
| Uncacheable: 16 | |
| Primary storage: | |
| Hits: 167 / 190 (87.89 %) | |
| Misses: 23 | |
| Cache size (GB): 0.42 / 0.51 (82.25 %) | |
| Files: 8128 | |
| Uncacheable: | |
| Called for linking: 13 | |
| No input file: 3 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-scipy/1.7.1 | |
| Autoloading py-numpy/1.19.5 | |
| Autoloading py-mpi4py/3.1.2 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.4.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1649843960:step_script [0Ksection_start:1649843960:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:coreneuron:nmodl:intel-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=35991 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Acoreneuron%3Anmodl%3Aintel-8[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1649843976:archive_cache [0Ksection_start:1649843976:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=36403 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=211024 responseStatus[0;m=201 Created token[0;m=ym6v9xs- | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=36445 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=211024 responseStatus[0;m=201 Created token[0;m=ym6v9xs- | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=36507 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=211024 responseStatus[0;m=201 Created token[0;m=ym6v9xs- | |
| section_end:1649843978:upload_artifacts_on_success [0Ksection_start:1649843978:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1649843978:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1649843665:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1649843665:resolve_secrets [0Ksection_start:1649843665:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor368966414, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 48472, build ref 9a466a6e2a1c807e4d6045f3fc0b1fbaf51370b6, job ID 211022 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J211022_PROD_P112_CP8_C7 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 379213 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J211022_PROD_P112_CP8_C7 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --ntasks=2 --jobid=379213 --cpus-per-task=8 --mem=76G | |
| section_end:1649843666:prepare_executor [0Ksection_start:1649843666:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i4n0 via bbpv1.epfl.ch... | |
| section_end:1649843671:prepare_script [0Ksection_start:1649843671:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1649843672:get_sources [0Ksection_start:1649843672:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:53356]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:53400]: Insane message length | |
| [32;1mChecking cache for build:coreneuron:nmodl:nvhpc:acc-8...[0;m | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:53450]: Insane message length | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=36764 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:53478]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:53518]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:53566]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:53610]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:53662]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:53700]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:53728]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:55972]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:56042]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:56086]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:56122]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:56154]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:56190]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:56414]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:56448]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:56506]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:56548]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:56584]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:56618]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:56654]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:56700]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:56734]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:56786]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:56822]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:56878]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:56918]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:56946]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:59206]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:59239]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:59284]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:59322]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:59356]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:59388]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:59428]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:59469]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:59502]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:59576]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:59630]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:59650]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:59690]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:59723]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:59760]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:59786]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:59842]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:59884]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:59928]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:59956]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:59992]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:60054]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:60114]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:60144]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:33042]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:33082]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:33120]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:33150]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:33191]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:33252]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:33286]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:33319]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:33357]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:33398]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:33440]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:33480]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:33534]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:33568]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:33618]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:33658]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:33688]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:34878]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:34908]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:34976]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:35012]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:35042]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:35100]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:35142]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:35188]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:35222]: Insane message length | |
| srun: error: eio_message_socket_accept: slurm_receive_msg[127.0.0.1:36424]: Insane message length | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1649843684:restore_cache [0Ksection_start:1649843684:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:nmodl (211018)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=37070 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=211018 responseStatus[0;m=200 OK token[0;m=8Sk4MWSK | |
| section_end:1649843685:download_artifacts [0Ksection_start:1649843685:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211022/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211022/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211022/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211022/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211022/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access [email protected] (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access [email protected] (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472/J211022_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = [email protected]:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = [email protected]: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron%nvhpc +nmodl~openmp+gpu+tests~legacy-unit+sympy build_type=RelWithDebInfo ^hpe-mpi%gcc ^/7hnncpjzlyqwesmjkszimpr4c2qteocr | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be 7eavmcfdqg53mknhnfbcd3xnco2pxk7o | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/379213/ccache | |
| Primary config: /nvme/bbpcihpcproj12/379213/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Apr 13 11:55:25 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.30 / 0.51 (58.96 %) | |
| Files: 10052 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: '7eavmcfdqg53mknhnfbcd3xnco2pxk7o' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron%nvhpc+gpu~legacy-unit+nmodl~openmp+sympy+tests build_type=RelWithDebInfo | |
| - ^hpe-mpi%gcc | |
| [+] ^nmodl@develop%[email protected]~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]~i18n arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]+libyaml arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - 7eavmcf coreneuron@develop%[email protected]~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared+sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - 6s6wcfe ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] vn2t5vi ^[email protected]%[email protected]+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] 2qmvlfy ^[email protected]%[email protected]~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [^] gi5x2dn ^[email protected]%[email protected]~allow-unsupported-compilers~dev arch=linux-rhel7-skylake | |
| - ajxdymq ^[email protected]%[email protected]+lex~nls arch=linux-rhel7-skylake | |
| [^] hyunzkn ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] vutuzbn ^[email protected]%[email protected]~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] utj47fz ^[email protected]%[email protected]+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ihxi5rl ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] evtnqzd ^[email protected]%[email protected]+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] x72vveu ^[email protected]%[email protected]~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - cp3ofsp ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [+] 7hnncpj ^nmodl@develop%[email protected]~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] onq3mhg ^[email protected]%[email protected]~i18n arch=linux-rhel7-skylake | |
| [^] 4ectow5 ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] 72xzp3v ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] 22arfs4 ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ascbeii ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] kvw3vhm ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] 7iyiygo ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] c7qvw2q ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] mazoiox ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] y7rfzdj ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] v4z3s5e ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] w4gddqx ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ci5oe5b ^[email protected]%[email protected]+libyaml arch=linux-rhel7-skylake | |
| [^] xj2wlac ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] xtett6q ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] dzb2mfs ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] 5fkun4i ^[email protected]%[email protected]~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> [email protected] : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-6s6wcfeanp2mkdib4c3n3ivkcuosopgm) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-vn2t5viljvtb5wyfhgmx57txyeiznxo4) | |
| ==> [email protected] : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-2qmvlfyylrv3t5ankluyr5cqey2nlfzd) | |
| ==> [email protected] : has external module in ['cuda/11.6.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cuda-11.6.1-ngetva (external cuda-11.6.1-gi5x2dn47i7nv76flbq7aatllxpaqmjp) | |
| ==> [email protected] : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-ajxdymqhnzqgeuhvk5nu5zfymzq35n6i) | |
| ==> [email protected] : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-hyunzknktdzri34bx26bupkvapehonql) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/pkgconf-1.8.0-ihxi5r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-evtnqzdtuvprwnbd2nljimpzywrhw4uo) | |
| ==> [email protected] : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-cp3ofspgkdqaqih5vrhotmdwvkozfswp) | |
| ==> [email protected] : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-72xzp3vgzh5b424qevkfruhs3ajzqbiy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libyaml-0.2.5-xj2wla | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/spdlog-1.9.2-x72vve | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/reportinglib-2.5.6-5fkun4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/hdf5-1.10.7-utj47f | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pluggy-0.13.0-mazoio | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-toml-0.10.2-w4gddq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-py-1.9.0-y7rfzd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-iniconfig-1.1.1-kvw3vh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-markupsafe-2.0.1-4ectow | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyparsing-2.4.7-c7qvw2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpmath-1.1.0-dzb2mf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-57.4.0-v4z3s5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-attrs-21.2.0-ascbei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyyaml-5.3.1-ci5oe5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libsonata-report-1.1-vutuzb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-jinja2-3.0.1-onq3mh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-packaging-21.0-7iyiyg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-sympy-1.8-xtett6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-6.2.4-22arfs | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/software/install_gcc-11.2.0-skylake/nmodl-develop-7hnncp | |
| ==> Installing coreneuron-develop-7eavmcfdqg53mknhnfbcd3xnco2pxk7o | |
| ==> No binary for coreneuron-develop-7eavmcfdqg53mknhnfbcd3xnco2pxk7o found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472, but it is owned by 0 | |
| ==> No patches needed for coreneuron | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| ==> coreneuron: Successfully installed coreneuron-develop-7eavmcfdqg53mknhnfbcd3xnco2pxk7o | |
| Fetch: 4.03s. Build: 3m 49.87s. Total: 3m 53.89s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/software/install_nvhpc-22.3-skylake/coreneuron-develop-7eavmc | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/379213/ccache | |
| Primary config: /nvme/bbpcihpcproj12/379213/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Apr 13 12:00:12 2022 | |
| Hits: 88 / 97 (90.72 %) | |
| Direct: 79 / 97 (81.44 %) | |
| Preprocessed: 9 / 18 (50.00 %) | |
| Misses: 9 | |
| Direct: 18 | |
| Preprocessed: 9 | |
| Uncacheable: 16 | |
| Primary storage: | |
| Hits: 167 / 194 (86.08 %) | |
| Misses: 27 | |
| Cache size (GB): 0.30 / 0.51 (59.18 %) | |
| Files: 10078 | |
| Uncacheable: | |
| Called for linking: 13 | |
| No input file: 3 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-scipy/1.7.1 | |
| Autoloading py-numpy/1.19.5 | |
| Autoloading py-mpi4py/3.1.2 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.4.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1649844013:step_script [0Ksection_start:1649844013:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:coreneuron:nmodl:nvhpc:acc-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=50682 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Acoreneuron%3Anmodl%3Anvhpc%3Aacc-8[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1649844028:archive_cache [0Ksection_start:1649844028:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=51126 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=211022 responseStatus[0;m=201 Created token[0;m=T5xFNgyz | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=51154 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=211022 responseStatus[0;m=201 Created token[0;m=T5xFNgyz | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=51195 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=211022 responseStatus[0;m=201 Created token[0;m=T5xFNgyz | |
| section_end:1649844029:upload_artifacts_on_success [0Ksection_start:1649844029:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1649844030:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1649843663:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1649843663:resolve_secrets [0Ksection_start:1649843663:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor764470396, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 48472, build ref 9a466a6e2a1c807e4d6045f3fc0b1fbaf51370b6, job ID 211021 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J211021_PROD_P112_CP3_C2 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 379212 | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J211021_PROD_P112_CP3_C2 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --ntasks=2 --jobid=379212 --cpus-per-task=8 --mem=76G | |
| section_end:1649843666:prepare_executor [0Ksection_start:1649843666:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i4n0 via bbpv1.epfl.ch... | |
| section_end:1649843671:prepare_script [0Ksection_start:1649843671:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1649843672:get_sources [0Ksection_start:1649843672:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:coreneuron:nmodl:nvhpc:omp-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=36808 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1649843684:restore_cache [0Ksection_start:1649843684:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:nmodl (211018)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=37007 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=211018 responseStatus[0;m=200 OK token[0;m=8Sk4MWSK | |
| section_end:1649843685:download_artifacts [0Ksection_start:1649843685:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211021/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211021/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211021/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211021/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211021/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access [email protected] (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access [email protected] (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472/J211021_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = [email protected]:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = [email protected]: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron%nvhpc +nmodl+openmp+gpu+tests~legacy-unit~sympy build_type=RelWithDebInfo ^hpe-mpi%gcc ^/7hnncpjzlyqwesmjkszimpr4c2qteocr | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be dqfui2d7qu3mc6w6xhrktts7kg2pjeio | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/379212/ccache | |
| Primary config: /nvme/bbpcihpcproj12/379212/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Apr 13 11:55:26 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.32 / 0.51 (62.56 %) | |
| Files: 10850 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'dqfui2d7qu3mc6w6xhrktts7kg2pjeio' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron%nvhpc+gpu~legacy-unit+nmodl+openmp~sympy+tests build_type=RelWithDebInfo | |
| - ^hpe-mpi%gcc | |
| [+] ^nmodl@develop%[email protected]~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]~i18n arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]+libyaml arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - dqfui2d coreneuron@develop%[email protected]~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl+openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - 6s6wcfe ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] vn2t5vi ^[email protected]%[email protected]+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] 2qmvlfy ^[email protected]%[email protected]~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [^] gi5x2dn ^[email protected]%[email protected]~allow-unsupported-compilers~dev arch=linux-rhel7-skylake | |
| - ajxdymq ^[email protected]%[email protected]+lex~nls arch=linux-rhel7-skylake | |
| [^] hyunzkn ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] vutuzbn ^[email protected]%[email protected]~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] utj47fz ^[email protected]%[email protected]+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ihxi5rl ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] evtnqzd ^[email protected]%[email protected]+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] x72vveu ^[email protected]%[email protected]~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - cp3ofsp ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [+] 7hnncpj ^nmodl@develop%[email protected]~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] onq3mhg ^[email protected]%[email protected]~i18n arch=linux-rhel7-skylake | |
| [^] 4ectow5 ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] 72xzp3v ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] 22arfs4 ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ascbeii ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] kvw3vhm ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] 7iyiygo ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] c7qvw2q ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] mazoiox ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] y7rfzdj ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] v4z3s5e ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] w4gddqx ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ci5oe5b ^[email protected]%[email protected]+libyaml arch=linux-rhel7-skylake | |
| [^] xj2wlac ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] xtett6q ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] dzb2mfs ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] 5fkun4i ^[email protected]%[email protected]~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> [email protected] : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-6s6wcfeanp2mkdib4c3n3ivkcuosopgm) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-vn2t5viljvtb5wyfhgmx57txyeiznxo4) | |
| ==> [email protected] : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-2qmvlfyylrv3t5ankluyr5cqey2nlfzd) | |
| ==> [email protected] : has external module in ['cuda/11.6.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cuda-11.6.1-ngetva (external cuda-11.6.1-gi5x2dn47i7nv76flbq7aatllxpaqmjp) | |
| ==> [email protected] : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-ajxdymqhnzqgeuhvk5nu5zfymzq35n6i) | |
| ==> [email protected] : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-hyunzknktdzri34bx26bupkvapehonql) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/pkgconf-1.8.0-ihxi5r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-evtnqzdtuvprwnbd2nljimpzywrhw4uo) | |
| ==> [email protected] : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-cp3ofspgkdqaqih5vrhotmdwvkozfswp) | |
| ==> [email protected] : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-72xzp3vgzh5b424qevkfruhs3ajzqbiy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libyaml-0.2.5-xj2wla | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/spdlog-1.9.2-x72vve | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/reportinglib-2.5.6-5fkun4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/hdf5-1.10.7-utj47f | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpmath-1.1.0-dzb2mf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-iniconfig-1.1.1-kvw3vh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-attrs-21.2.0-ascbei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-toml-0.10.2-w4gddq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyparsing-2.4.7-c7qvw2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-57.4.0-v4z3s5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pluggy-0.13.0-mazoio | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-markupsafe-2.0.1-4ectow | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-py-1.9.0-y7rfzd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyyaml-5.3.1-ci5oe5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libsonata-report-1.1-vutuzb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-sympy-1.8-xtett6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-packaging-21.0-7iyiyg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-jinja2-3.0.1-onq3mh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-6.2.4-22arfs | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/software/install_gcc-11.2.0-skylake/nmodl-develop-7hnncp | |
| ==> Installing coreneuron-develop-dqfui2d7qu3mc6w6xhrktts7kg2pjeio | |
| ==> No binary for coreneuron-develop-dqfui2d7qu3mc6w6xhrktts7kg2pjeio found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472, but it is owned by 0 | |
| ==> No patches needed for coreneuron | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| ==> coreneuron: Successfully installed coreneuron-develop-dqfui2d7qu3mc6w6xhrktts7kg2pjeio | |
| Fetch: 4.56s. Build: 3m 48.79s. Total: 3m 53.35s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/software/install_nvhpc-22.3-skylake/coreneuron-develop-dqfui2 | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/379212/ccache | |
| Primary config: /nvme/bbpcihpcproj12/379212/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Apr 13 12:00:11 2022 | |
| Hits: 88 / 98 (89.80 %) | |
| Direct: 79 / 98 (80.61 %) | |
| Preprocessed: 9 / 19 (47.37 %) | |
| Misses: 10 | |
| Direct: 19 | |
| Preprocessed: 10 | |
| Uncacheable: 17 | |
| Primary storage: | |
| Hits: 167 / 196 (85.20 %) | |
| Misses: 29 | |
| Cache size (GB): 0.32 / 0.51 (62.79 %) | |
| Files: 10878 | |
| Uncacheable: | |
| Called for linking: 14 | |
| No input file: 3 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-scipy/1.7.1 | |
| Autoloading py-numpy/1.19.5 | |
| Autoloading py-mpi4py/3.1.2 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.4.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1649844012:step_script [0Ksection_start:1649844012:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:coreneuron:nmodl:nvhpc:omp-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=50589 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Acoreneuron%3Anmodl%3Anvhpc%3Aomp-8[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1649844030:archive_cache [0Ksection_start:1649844030:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=51315 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=211021 responseStatus[0;m=201 Created token[0;m=Koj5cr-4 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=51365 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=211021 responseStatus[0;m=201 Created token[0;m=Koj5cr-4 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=51408 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=211021 responseStatus[0;m=201 Created token[0;m=Koj5cr-4 | |
| section_end:1649844031:upload_artifacts_on_success [0Ksection_start:1649844031:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1649844032:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1649843540:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1649843540:resolve_secrets [0Ksection_start:1649843540:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor166864381, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 48472, build ref 9a466a6e2a1c807e4d6045f3fc0b1fbaf51370b6, job ID 211028 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J211028_PROD_P112_CP5_C13 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 379163 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J211028_PROD_P112_CP5_C13 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --ntasks=2 --jobid=379163 --cpus-per-task=8 --mem=76G | |
| section_end:1649843542:prepare_executor [0Ksection_start:1649843542:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i7n21 via bbpv1.epfl.ch... | |
| section_end:1649843544:prepare_script [0Ksection_start:1649843544:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1649843545:get_sources [0Ksection_start:1649843545:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:neuron:mod2c:intel-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=7906 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1649843551:restore_cache [0Ksection_start:1649843551:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:mod2c:intel (211023)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=8568 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=211023 responseStatus[0;m=200 OK token[0;m=SAThh_5K | |
| section_end:1649843552:download_artifacts [0Ksection_start:1649843552:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211028/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211028/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211028/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211028/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211028/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access [email protected] (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access [email protected] (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472/J211028_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = [email protected]:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = [email protected]: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%intel +coreneuron+debug+tests~legacy-unit~rx3d model_tests=channel-benchmark,olfactory,tqperf-heavy ^/hsyhen5wbojr4dsx5rf32wndj3dpm5nb | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be 47kwkdqbfahzhd6mgo3d7lvidjenlcwo | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/379163/ccache | |
| Primary config: /nvme/bbpcihpcproj12/379163/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Apr 13 11:52:56 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.46 / 0.51 (90.56 %) | |
| Files: 28368 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: '47kwkdqbfahzhd6mgo3d7lvidjenlcwo' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%intel+coreneuron+debug~legacy-unit~rx3d+tests model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| [+] ^coreneuron@develop%[email protected]~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl~openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=Debug arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - 47kwkdq neuron@develop%[email protected]+binary~caliper+cmake~codechecks+coreneuron~cross-compile+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+multisend~profile+pysetup+python~rx3d+shared+tests build_type=RelWithDebInfo model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c arch=linux-rhel7-skylake | |
| - dwdch6b ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| - z3q5f3x ^[email protected]%[email protected]~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [+] hsyhen5 ^coreneuron@develop%[email protected]~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl~openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=Debug arch=linux-rhel7-skylake | |
| [^] dl7pfht ^[email protected]%[email protected]+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] 3narjkw ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] nfrzrlo ^[email protected]%[email protected]~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ofveh3j ^[email protected]%[email protected]+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] xys6npz ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] e7w5nez ^[email protected]%[email protected]+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] wk3uenv ^[email protected]%[email protected]~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] f27a7nn ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] gdhqypa ^[email protected]%[email protected]~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - s4ueg72 ^[email protected]%[email protected]+lex~nls arch=linux-rhel7-skylake | |
| [^] bjxwlfq ^[email protected]%[email protected]+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel7-skylake | |
| [^] dvyfbbf ^[email protected]%[email protected]~debug~pic+shared arch=linux-rhel7-skylake | |
| [^] ka2cfu4 ^[email protected]%[email protected] libs=shared,static arch=linux-rhel7-skylake | |
| [^] w3ob7m2 ^[email protected]%[email protected]~python arch=linux-rhel7-skylake | |
| [^] ahg6hq4 ^[email protected]%[email protected]~pic libs=shared,static arch=linux-rhel7-skylake | |
| [^] q3rwuez ^[email protected]%[email protected]~symlinks+termlib abi=none arch=linux-rhel7-skylake | |
| [^] 2fli66n ^[email protected]%[email protected] patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-skylake | |
| - 6ggc5yr ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] qj3vvxk ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] 5flpilw ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ipsbwzp ^[email protected]%[email protected]+blas+lapack patches=8a9d5d1b3f145c043b8b04869e7d46c6ff95c3f486d84f69693017c7e6190c7d arch=linux-rhel7-skylake | |
| [^] rl5ojfn ^[email protected]%[email protected]~ilp64+shared threads=none arch=linux-rhel7-skylake | |
| [^] taxuisw ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] tzmlo5v ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] d5szgli ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] huky5p4 ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] wli7caj ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] 3a3ralt ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] rh6zvev ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] kpwupa3 ^[email protected]%[email protected]+toml arch=linux-rhel7-skylake | |
| [^] apu667d ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] jesa65u ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] skrpmyr ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ktthpzx ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] tzl5sq5 ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] zkd7o6d ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] 5abs2t7 ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> [email protected] : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-dwdch6bmdeclr2novthsywtrryotawwz) | |
| ==> [email protected] : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-z3q5f3xwpuibd3qbgdscqmu3efarbu42) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-dl7pfhtsvyaq3273gr2g3l5vr37eeydc) | |
| ==> [email protected] : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-3narjkwjh6i2jr3zl3g5wdjlqi52hkwh) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/pkgconf-1.8.0-xys6np | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-e7w5nezpwf572epfhbosqfzboztysout) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/spdlog-1.9.2-wk3uen | |
| ==> [email protected] : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-f27a7nnhppeztxijpispnaedcfo2vjxi) | |
| ==> [email protected] : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-s4ueg72j7l6vkdyvfxj2tweo7v7s3otx) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bzip2-1.0.8-eu2d6e (external bzip2-1.0.8-dvyfbbfdan33i7wyydyeskb3legztopm) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/libiconv-1.16-ka2cfu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/xz-5.2.5-ahg6hq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ncurses-6.2-nsve5x (external ncurses-6.2-q3rwuezhc2j56kexunypjpejzketozmc) | |
| [+] /usr (external tar-1.28-2fli66nkkv35g34exwd2xifp5w3gtgo6) | |
| ==> [email protected] : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-6ggc5yre7qddwxdjmn7sfptpdoiy4dtp) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/intel-mkl-2020.4.304-rzr3hj (external intel-mkl-2020.4.304-rl5ojfngtc7sffwyz7v6ek6eceq53wed) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/readline-8.1-we2frg (external readline-8.1-5abs2t7f6dtgbejv6kjzd4gjwhdlr7qr) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/reportinglib-2.5.6-gdhqyp | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/hdf5-1.10.7-ofveh3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-setuptools-57.4.0-5flpil | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/libxml2-2.9.12-w3ob7m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/libsonata-report-1.1-nfrzrl | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-cython-0.29.24-taxuis | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-toml-0.10.2-ktthpz | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-pyparsing-2.4.7-3a3ral | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-coverage-5.5-zkd7o6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-pip-21.1.2-jesa65 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-attrs-21.2.0-d5szgl | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-iniconfig-1.1.1-huky5p | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-mpi4py-3.1.2-qj3vvx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/gettext-0.21-bjxwlf | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/software/install_intel-2021.4.0-skylake/coreneuron-develop-hsyhen | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-numpy-1.19.5-ipsbwz | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-packaging-21.0-wli7ca | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-tomli-1.2.1-apu667 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-setuptools-scm-6.3.2-kpwupa | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-py-1.9.0-skrpmy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-pluggy-0.13.0-rh6zve | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-pytest-6.2.4-tzmlo5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-pytest-cov-2.8.1-tzl5sq | |
| ==> Installing neuron-develop-47kwkdqbfahzhd6mgo3d7lvidjenlcwo | |
| ==> No binary for neuron-develop-47kwkdqbfahzhd6mgo3d7lvidjenlcwo found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472, but it is owned by 0 | |
| ==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| ==> neuron: Successfully installed neuron-develop-47kwkdqbfahzhd6mgo3d7lvidjenlcwo | |
| Fetch: 15.07s. Build: 8m 0.06s. Total: 8m 15.12s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/software/install_intel-2021.4.0-skylake/neuron-develop-47kwkd | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/379163/ccache | |
| Primary config: /nvme/bbpcihpcproj12/379163/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Apr 13 12:01:58 2022 | |
| Hits: 718 / 816 (87.99 %) | |
| Direct: 339 / 825 (41.09 %) | |
| Preprocessed: 379 / 480 (78.96 %) | |
| Misses: 98 | |
| Direct: 486 | |
| Preprocessed: 101 | |
| Uncacheable: 130 | |
| Primary storage: | |
| Hits: 1361 / 1644 (82.79 %) | |
| Misses: 283 | |
| Cache size (GB): 0.46 / 0.51 (90.80 %) | |
| Files: 28560 | |
| Uncacheable: | |
| Autoconf compile/link: 7 | |
| Called for linking: 107 | |
| Called for preprocessing: 1 | |
| Compilation failed: 3 | |
| No input file: 6 | |
| Preprocessing failed: 6 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-scipy/1.7.1 | |
| Autoloading py-numpy/1.19.5 | |
| Autoloading py-mpi4py/3.1.2 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.4.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1649844128:step_script [0Ksection_start:1649844128:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:neuron:mod2c:intel-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=31814 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Aneuron%3Amod2c%3Aintel-8[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1649844155:archive_cache [0Ksection_start:1649844155:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=32243 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=211028 responseStatus[0;m=201 Created token[0;m=Y6xPs83u | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=32286 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=211028 responseStatus[0;m=201 Created token[0;m=Y6xPs83u | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=32327 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=211028 responseStatus[0;m=201 Created token[0;m=Y6xPs83u | |
| section_end:1649844157:upload_artifacts_on_success [0Ksection_start:1649844157:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1649844158:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1649843622:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1649843622:resolve_secrets [0Ksection_start:1649843622:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor791176765, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 48472, build ref 9a466a6e2a1c807e4d6045f3fc0b1fbaf51370b6, job ID 211025 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J211025_PROD_P112_CP6_C5 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 379200 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J211025_PROD_P112_CP6_C5 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --ntasks=2 --jobid=379200 --cpus-per-task=8 --mem=76G | |
| section_end:1649843623:prepare_executor [0Ksection_start:1649843623:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i7n21 via bbpv1.epfl.ch... | |
| section_end:1649843625:prepare_script [0Ksection_start:1649843625:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1649843626:get_sources [0Ksection_start:1649843626:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:neuron:mod2c:nvhpc:acc-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=11363 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1649843632:restore_cache [0Ksection_start:1649843632:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:mod2c:nvhpc:acc (211019)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=11520 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=211019 responseStatus[0;m=200 OK token[0;m=Qw7KHaR5 | |
| section_end:1649843633:download_artifacts [0Ksection_start:1649843633:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211025/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211025/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211025/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211025/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211025/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access [email protected] (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access [email protected] (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472/J211025_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = [email protected]:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = [email protected]: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%nvhpc +coreneuron+debug+tests~legacy-unit~rx3d model_tests=channel-benchmark,olfactory,tqperf-heavy ^/myaj5gmcll4sywf66372ze5qfubwzr3s | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be sqrws2vsdssc3xwshyyrvkm5oyeurofv | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/379200/ccache | |
| Primary config: /nvme/bbpcihpcproj12/379200/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Apr 13 11:54:20 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.46 / 0.51 (90.81 %) | |
| Files: 30335 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'sqrws2vsdssc3xwshyyrvkm5oyeurofv' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%nvhpc+coreneuron+debug~legacy-unit~rx3d+tests model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| [+] ^coreneuron@develop%[email protected]~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl+openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]~allow-unsupported-compilers~dev arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - sqrws2v neuron@develop%[email protected]+binary~caliper+cmake~codechecks+coreneuron~cross-compile+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+multisend~profile+pysetup+python~rx3d+shared+tests build_type=RelWithDebInfo model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c arch=linux-rhel7-skylake | |
| - 6s6wcfe ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| - ucwiakr ^[email protected]%[email protected]~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [+] myaj5gm ^coreneuron@develop%[email protected]~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl+openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] vn2t5vi ^[email protected]%[email protected]+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] gi5x2dn ^[email protected]%[email protected]~allow-unsupported-compilers~dev arch=linux-rhel7-skylake | |
| [^] pjmdwuu ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] vtyvxbi ^[email protected]%[email protected]~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] tbfoeg7 ^[email protected]%[email protected]+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 6dfyugs ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] h7lotu6 ^[email protected]%[email protected]+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] snd2rt6 ^[email protected]%[email protected]~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] f62u3oh ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] bdkvweu ^[email protected]%[email protected]~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - ajxdymq ^[email protected]%[email protected]+lex~nls arch=linux-rhel7-skylake | |
| [^] lswrnpk ^[email protected]%[email protected]+bzip2+curses+git~libunistring+libxml2+tar+xz patches=6e530daaae14725d578d6cafbf7d523accc9ed29fd817bd421cf98a5f51e9e1b,bbe9f0539aa504966ac104224d25a9260faa1015ed3adda936467be9c7de4eae,fb27a3fb5e414bdc50ffebbbe2da986473df70a493caa4396226f51a67c55424 arch=linux-rhel7-skylake | |
| [^] h3k3sur ^[email protected]%[email protected]~debug~pic+shared arch=linux-rhel7-skylake | |
| [^] f4hjvxq ^[email protected]%[email protected] libs=shared,static arch=linux-rhel7-skylake | |
| [^] i3pi6vv ^[email protected]%[email protected]~python patches=05ff238cf435825ef835c7ae39376b52dc83d8caf19e962f0766c841386a305a,10a88ad47f9797cf7cf2d7d07241f665a3b6d1f31fa026728c8c2ae93e1664e9 arch=linux-rhel7-skylake | |
| [^] cqwvvjz ^[email protected]%[email protected]~pic libs=shared,static arch=linux-rhel7-skylake | |
| [^] jpe3but ^[email protected]%[email protected]~symlinks+termlib abi=none arch=linux-rhel7-skylake | |
| [^] zmpra4b ^[email protected]%[email protected] patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-skylake | |
| - cp3ofsp ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] v2mlx7s ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] l4z6bjq ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] kohlctm ^[email protected]%[email protected]+blas+lapack patches=cf407c1024b0878c4222dd352aa9dece412073bb15b138243a2893725434c7b6 arch=linux-rhel7-skylake | |
| [^] r5cvgru ^[email protected]%[email protected]~ilp64+shared threads=none arch=linux-rhel7-skylake | |
| [^] dzkzhqs ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] iopgs7j ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] prphkb7 ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] iwg6vas ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] o7j2crb ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] uecslka ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] fjgegze ^[email protected]%[email protected]+toml arch=linux-rhel7-skylake | |
| [^] xsvykjn ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] w6kat5w ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] qhehf4e ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] yg6s277 ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] l6udtg7 ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] lfjn2o4 ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] 3333cwm ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> [email protected] : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-6s6wcfeanp2mkdib4c3n3ivkcuosopgm) | |
| ==> [email protected] : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-ucwiakreeghdgbo22kbqqhgnnlwxqtnn) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-vn2t5viljvtb5wyfhgmx57txyeiznxo4) | |
| ==> [email protected] : has external module in ['cuda/11.6.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cuda-11.6.1-ngetva (external cuda-11.6.1-gi5x2dn47i7nv76flbq7aatllxpaqmjp) | |
| ==> [email protected] : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-pjmdwuu36ioiwqyrg6lrj7nrq3waqjj2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/pkgconf-1.8.0-6dfyug | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-h7lotu6jszcvumwucry2y5jnhvxw5x2d) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/spdlog-1.9.2-snd2rt | |
| ==> [email protected] : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-f62u3ohchswt5q2b63chawohzqrl6wvy) | |
| ==> [email protected] : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-ajxdymqhnzqgeuhvk5nu5zfymzq35n6i) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bzip2-1.0.8-eu2d6e (external bzip2-1.0.8-h3k3surwc24macvlxbcme35uztk6dqiw) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/libiconv-1.16-f4hjvx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/xz-5.2.5-cqwvvj | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ncurses-6.2-nsve5x (external ncurses-6.2-jpe3butfegqspi6dnm7cyikpjt5nphfo) | |
| [+] /usr (external tar-1.28-zmpra4bla6bcjnayn6eze4rnd5u4txfm) | |
| ==> [email protected] : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-cp3ofspgkdqaqih5vrhotmdwvkozfswp) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/intel-mkl-2020.4.304-rzr3hj (external intel-mkl-2020.4.304-r5cvgrurdnt6y267arsmmmgqi75ouxd2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/readline-8.1-we2frg (external readline-8.1-3333cwmykvahrsdydir4qeyasic3liq6) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/reportinglib-2.5.6-bdkvwe | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/hdf5-1.10.7-tbfoeg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-setuptools-57.4.0-l4z6bj | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/libxml2-2.9.12-i3pi6v | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/libsonata-report-1.1-vtyvxb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-mpi4py-3.1.2-v2mlx7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-pip-21.1.2-w6kat5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-toml-0.10.2-yg6s27 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-iniconfig-1.1.1-prphkb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-numpy-1.17.5-kohlct | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-pyparsing-2.4.7-o7j2cr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-coverage-5.5-lfjn2o | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-attrs-21.2.0-iopgs7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/gettext-0.21-lswrnp | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/software/install_nvhpc-22.3-skylake/coreneuron-develop-myaj5g | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-tomli-1.2.1-xsvykj | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-packaging-21.0-iwg6va | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-setuptools-scm-6.3.2-fjgegz | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-py-1.9.0-qhehf4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-pluggy-0.13.0-uecslk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-pytest-6.2.4-dzkzhq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-pytest-cov-2.8.1-l6udtg | |
| ==> Installing neuron-develop-sqrws2vsdssc3xwshyyrvkm5oyeurofv | |
| ==> No binary for neuron-develop-sqrws2vsdssc3xwshyyrvkm5oyeurofv found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472, but it is owned by 0 | |
| ==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| ==> neuron: Successfully installed neuron-develop-sqrws2vsdssc3xwshyyrvkm5oyeurofv | |
| Fetch: 19.36s. Build: 17m 22.18s. Total: 17m 41.54s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/software/install_nvhpc-22.3-skylake/neuron-develop-sqrws2 | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/379200/ccache | |
| Primary config: /nvme/bbpcihpcproj12/379200/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Apr 13 12:12:52 2022 | |
| Hits: 718 / 815 (88.10 %) | |
| Direct: 336 / 824 (40.78 %) | |
| Preprocessed: 382 / 482 (79.25 %) | |
| Misses: 97 | |
| Direct: 488 | |
| Preprocessed: 100 | |
| Uncacheable: 122 | |
| Primary storage: | |
| Hits: 1360 / 1642 (82.83 %) | |
| Misses: 282 | |
| Cache size (GB): 0.47 / 0.51 (91.04 %) | |
| Files: 30525 | |
| Uncacheable: | |
| Autoconf compile/link: 7 | |
| Called for linking: 99 | |
| Called for preprocessing: 1 | |
| Compilation failed: 3 | |
| No input file: 6 | |
| Preprocessing failed: 6 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-scipy/1.7.1 | |
| Autoloading py-numpy/1.19.5 | |
| Autoloading py-mpi4py/3.1.2 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.4.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1649844780:step_script [0Ksection_start:1649844780:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:neuron:mod2c:nvhpc:acc-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=52775 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Aneuron%3Amod2c%3Anvhpc%3Aacc-8[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1649844810:archive_cache [0Ksection_start:1649844810:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=53397 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=211025 responseStatus[0;m=201 Created token[0;m=xznJFiB7 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=53441 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=211025 responseStatus[0;m=201 Created token[0;m=xznJFiB7 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=53481 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=211025 responseStatus[0;m=201 Created token[0;m=xznJFiB7 | |
| section_end:1649844811:upload_artifacts_on_success [0Ksection_start:1649844811:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1649844812:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1649843982:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1649843982:resolve_secrets [0Ksection_start:1649843982:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor953715686, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 48472, build ref 9a466a6e2a1c807e4d6045f3fc0b1fbaf51370b6, job ID 211029 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J211029_PROD_P112_CP2_C8 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 379274 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J211029_PROD_P112_CP2_C8 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --ntasks=2 --jobid=379274 --cpus-per-task=8 --mem=76G | |
| section_end:1649843983:prepare_executor [0Ksection_start:1649843983:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i4n0 via bbpv1.epfl.ch... | |
| section_end:1649843985:prepare_script [0Ksection_start:1649843985:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1649843986:get_sources [0Ksection_start:1649843986:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:neuron:nmodl:intel-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=48646 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1649843993:restore_cache [0Ksection_start:1649843993:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:nmodl:intel (211024)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=49016 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=211024 responseStatus[0;m=200 OK token[0;m=ym6v9xs- | |
| section_end:1649843994:download_artifacts [0Ksection_start:1649843994:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211029/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211029/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211029/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211029/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211029/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access [email protected] (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access [email protected] (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472/J211029_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = [email protected]:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = [email protected]: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%intel +coreneuron+debug+tests~legacy-unit~rx3d model_tests=channel-benchmark,olfactory,tqperf-heavy ^/x2m7t35nswt5wf62dii5jjfu45snneyv | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be 4ljxz6sigfw2sqg4xtopvwa3qqcjfsk4 | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/379274/ccache | |
| Primary config: /nvme/bbpcihpcproj12/379274/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Apr 13 12:00:26 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.47 / 0.51 (91.65 %) | |
| Files: 26529 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: '4ljxz6sigfw2sqg4xtopvwa3qqcjfsk4' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%intel+coreneuron+debug~legacy-unit~rx3d+tests model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| [+] ^coreneuron@develop%[email protected]~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=Debug arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [+] ^nmodl@develop%[email protected]~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]~i18n arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]+libyaml arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - 4ljxz6s neuron@develop%[email protected]+binary~caliper+cmake~codechecks+coreneuron~cross-compile+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+multisend~profile+pysetup+python~rx3d+shared+tests build_type=RelWithDebInfo model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c arch=linux-rhel7-skylake | |
| - dwdch6b ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| - z3q5f3x ^[email protected]%[email protected]~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [+] x2m7t35 ^coreneuron@develop%[email protected]~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=Debug arch=linux-rhel7-skylake | |
| [^] dl7pfht ^[email protected]%[email protected]+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] hyunzkn ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] vutuzbn ^[email protected]%[email protected]~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] utj47fz ^[email protected]%[email protected]+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ihxi5rl ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] evtnqzd ^[email protected]%[email protected]+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] x72vveu ^[email protected]%[email protected]~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [+] 7hnncpj ^nmodl@develop%[email protected]~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] onq3mhg ^[email protected]%[email protected]~i18n arch=linux-rhel7-skylake | |
| [^] 4ectow5 ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] 72xzp3v ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] 22arfs4 ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ascbeii ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] kvw3vhm ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] 7iyiygo ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] c7qvw2q ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] mazoiox ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] y7rfzdj ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] v4z3s5e ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] w4gddqx ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ci5oe5b ^[email protected]%[email protected]+libyaml arch=linux-rhel7-skylake | |
| [^] xj2wlac ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] xtett6q ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] dzb2mfs ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] 5fkun4i ^[email protected]%[email protected]~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - s4ueg72 ^[email protected]%[email protected]+lex~nls arch=linux-rhel7-skylake | |
| [^] iu2b5hx ^[email protected]%[email protected]+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel7-skylake | |
| [^] 3rmq3zx ^[email protected]%[email protected]~debug~pic+shared arch=linux-rhel7-skylake | |
| [^] hxxlexb ^[email protected]%[email protected] libs=shared,static arch=linux-rhel7-skylake | |
| [^] dnxqn2k ^[email protected]%[email protected]~python arch=linux-rhel7-skylake | |
| [^] jzpqn5y ^[email protected]%[email protected]~pic libs=shared,static arch=linux-rhel7-skylake | |
| [^] ams67cx ^[email protected]%[email protected]~symlinks+termlib abi=none arch=linux-rhel7-skylake | |
| [^] ir7xtbl ^[email protected]%[email protected] patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-skylake | |
| - 6ggc5yr ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] n6q4vfz ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] gjm7kkq ^[email protected]%[email protected]+blas+lapack patches=8a9d5d1b3f145c043b8b04869e7d46c6ff95c3f486d84f69693017c7e6190c7d arch=linux-rhel7-skylake | |
| [^] r5cvgru ^[email protected]%[email protected]~ilp64+shared threads=none arch=linux-rhel7-skylake | |
| [^] h2fsi6i ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] q5n7ofc ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] fudvy5v ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] 5abs2t7 ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> [email protected] : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-dwdch6bmdeclr2novthsywtrryotawwz) | |
| ==> [email protected] : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-z3q5f3xwpuibd3qbgdscqmu3efarbu42) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-dl7pfhtsvyaq3273gr2g3l5vr37eeydc) | |
| ==> [email protected] : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-hyunzknktdzri34bx26bupkvapehonql) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/pkgconf-1.8.0-ihxi5r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-evtnqzdtuvprwnbd2nljimpzywrhw4uo) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/spdlog-1.9.2-x72vve | |
| ==> [email protected] : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-72xzp3vgzh5b424qevkfruhs3ajzqbiy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libyaml-0.2.5-xj2wla | |
| ==> [email protected] : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-s4ueg72j7l6vkdyvfxj2tweo7v7s3otx) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bzip2-1.0.8-eu2d6e (external bzip2-1.0.8-3rmq3zxuntsiphthnvty6gtydbmbkwr5) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libiconv-1.16-hxxlex | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/xz-5.2.5-jzpqn5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ncurses-6.2-nsve5x (external ncurses-6.2-ams67cxbq5vc7wiay2ndr2ksce2igbfw) | |
| [+] /usr (external tar-1.28-ir7xtblauhq3vtkpjrl7ou3nzevcsi3u) | |
| ==> [email protected] : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-6ggc5yre7qddwxdjmn7sfptpdoiy4dtp) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/intel-mkl-2020.4.304-rzr3hj (external intel-mkl-2020.4.304-r5cvgrurdnt6y267arsmmmgqi75ouxd2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/readline-8.1-we2frg (external readline-8.1-5abs2t7f6dtgbejv6kjzd4gjwhdlr7qr) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/reportinglib-2.5.6-5fkun4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/hdf5-1.10.7-utj47f | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-markupsafe-2.0.1-4ectow | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pluggy-0.13.0-mazoio | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyparsing-2.4.7-c7qvw2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-iniconfig-1.1.1-kvw3vh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-57.4.0-v4z3s5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-attrs-21.2.0-ascbei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-toml-0.10.2-w4gddq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpmath-1.1.0-dzb2mf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-py-1.9.0-y7rfzd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyyaml-5.3.1-ci5oe5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libxml2-2.9.12-dnxqn2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libsonata-report-1.1-vutuzb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-jinja2-3.0.1-onq3mh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-packaging-21.0-7iyiyg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpi4py-3.1.2-n6q4vf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-coverage-5.5-fudvy5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-cython-0.29.24-h2fsi6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-sympy-1.8-xtett6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/gettext-0.21-iu2b5h | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-6.2.4-22arfs | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-numpy-1.19.5-gjm7kk | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/software/install_gcc-11.2.0-skylake/nmodl-develop-7hnncp | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-cov-2.8.1-q5n7of | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/software/install_intel-2021.4.0-skylake/coreneuron-develop-x2m7t3 | |
| ==> Installing neuron-develop-4ljxz6sigfw2sqg4xtopvwa3qqcjfsk4 | |
| ==> No binary for neuron-develop-4ljxz6sigfw2sqg4xtopvwa3qqcjfsk4 found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472, but it is owned by 0 | |
| ==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| ==> neuron: Successfully installed neuron-develop-4ljxz6sigfw2sqg4xtopvwa3qqcjfsk4 | |
| Fetch: 39.72s. Build: 19m 51.35s. Total: 20m 31.07s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/software/install_intel-2021.4.0-skylake/neuron-develop-4ljxz6 | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/379274/ccache | |
| Primary config: /nvme/bbpcihpcproj12/379274/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Apr 13 12:21:57 2022 | |
| Hits: 702 / 800 (87.75 %) | |
| Direct: 169 / 809 (20.89 %) | |
| Preprocessed: 533 / 634 (84.07 %) | |
| Misses: 98 | |
| Direct: 640 | |
| Preprocessed: 101 | |
| Uncacheable: 126 | |
| Primary storage: | |
| Hits: 1175 / 1612 (72.89 %) | |
| Misses: 437 | |
| Cache size (GB): 0.47 / 0.51 (92.26 %) | |
| Files: 26871 | |
| Uncacheable: | |
| Autoconf compile/link: 7 | |
| Called for linking: 103 | |
| Called for preprocessing: 1 | |
| Compilation failed: 3 | |
| No input file: 6 | |
| Preprocessing failed: 6 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-scipy/1.7.1 | |
| Autoloading py-numpy/1.19.5 | |
| Autoloading py-mpi4py/3.1.2 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.4.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1649845322:step_script [0Ksection_start:1649845322:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:neuron:nmodl:intel-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=94758 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Aneuron%3Anmodl%3Aintel-8[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1649845342:archive_cache [0Ksection_start:1649845342:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=96775 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=211029 responseStatus[0;m=201 Created token[0;m=zngzupmC | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=96837 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=211029 responseStatus[0;m=201 Created token[0;m=zngzupmC | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=96887 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=211029 responseStatus[0;m=201 Created token[0;m=zngzupmC | |
| section_end:1649845343:upload_artifacts_on_success [0Ksection_start:1649845343:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1649845344:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1649844032:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1649844032:resolve_secrets [0Ksection_start:1649844032:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor724833531, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 48472, build ref 9a466a6e2a1c807e4d6045f3fc0b1fbaf51370b6, job ID 211027 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J211027_PROD_P112_CP3_C2 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 379282 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J211027_PROD_P112_CP3_C2 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --ntasks=2 --jobid=379282 --cpus-per-task=8 --mem=76G | |
| section_end:1649844034:prepare_executor [0Ksection_start:1649844034:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i4n0 via bbpv1.epfl.ch... | |
| section_end:1649844036:prepare_script [0Ksection_start:1649844036:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1649844037:get_sources [0Ksection_start:1649844037:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:neuron:nmodl:nvhpc:acc-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=51849 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1649844044:restore_cache [0Ksection_start:1649844044:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:nmodl:nvhpc:acc (211022)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=52139 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=211022 responseStatus[0;m=200 OK token[0;m=T5xFNgyz | |
| section_end:1649844045:download_artifacts [0Ksection_start:1649844045:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211027/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211027/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211027/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211027/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211027/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access [email protected] (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access [email protected] (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472/J211027_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = [email protected]:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = [email protected]: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%nvhpc +coreneuron+debug+tests~legacy-unit~rx3d model_tests=channel-benchmark,olfactory,tqperf-heavy ^/7eavmcfdqg53mknhnfbcd3xnco2pxk7o | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be aw3evwlkdey4vmmjzpsuscd3bnfgndfy | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/379282/ccache | |
| Primary config: /nvme/bbpcihpcproj12/379282/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Apr 13 12:01:09 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.47 / 0.51 (91.18 %) | |
| Files: 27085 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'aw3evwlkdey4vmmjzpsuscd3bnfgndfy' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%nvhpc+coreneuron+debug~legacy-unit~rx3d+tests model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| [+] ^coreneuron@develop%[email protected]~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared+sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]~allow-unsupported-compilers~dev arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [+] ^nmodl@develop%[email protected]~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]~i18n arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]+libyaml arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - aw3evwl neuron@develop%[email protected]+binary~caliper+cmake~codechecks+coreneuron~cross-compile+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+multisend~profile+pysetup+python~rx3d+shared+tests build_type=RelWithDebInfo model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c arch=linux-rhel7-skylake | |
| - 6s6wcfe ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| - ucwiakr ^[email protected]%[email protected]~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [+] 7eavmcf ^coreneuron@develop%[email protected]~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared+sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] vn2t5vi ^[email protected]%[email protected]+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] gi5x2dn ^[email protected]%[email protected]~allow-unsupported-compilers~dev arch=linux-rhel7-skylake | |
| [^] hyunzkn ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] vutuzbn ^[email protected]%[email protected]~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] utj47fz ^[email protected]%[email protected]+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ihxi5rl ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] evtnqzd ^[email protected]%[email protected]+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] x72vveu ^[email protected]%[email protected]~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [+] 7hnncpj ^nmodl@develop%[email protected]~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] onq3mhg ^[email protected]%[email protected]~i18n arch=linux-rhel7-skylake | |
| [^] 4ectow5 ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] 72xzp3v ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] 22arfs4 ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ascbeii ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] kvw3vhm ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] 7iyiygo ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] c7qvw2q ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] mazoiox ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] y7rfzdj ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] v4z3s5e ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] w4gddqx ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ci5oe5b ^[email protected]%[email protected]+libyaml arch=linux-rhel7-skylake | |
| [^] xj2wlac ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] xtett6q ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] dzb2mfs ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] 5fkun4i ^[email protected]%[email protected]~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - ajxdymq ^[email protected]%[email protected]+lex~nls arch=linux-rhel7-skylake | |
| [^] iu2b5hx ^[email protected]%[email protected]+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel7-skylake | |
| [^] 3rmq3zx ^[email protected]%[email protected]~debug~pic+shared arch=linux-rhel7-skylake | |
| [^] hxxlexb ^[email protected]%[email protected] libs=shared,static arch=linux-rhel7-skylake | |
| [^] dnxqn2k ^[email protected]%[email protected]~python arch=linux-rhel7-skylake | |
| [^] jzpqn5y ^[email protected]%[email protected]~pic libs=shared,static arch=linux-rhel7-skylake | |
| [^] ams67cx ^[email protected]%[email protected]~symlinks+termlib abi=none arch=linux-rhel7-skylake | |
| [^] ir7xtbl ^[email protected]%[email protected] patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-skylake | |
| - cp3ofsp ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] n6q4vfz ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] gjm7kkq ^[email protected]%[email protected]+blas+lapack patches=8a9d5d1b3f145c043b8b04869e7d46c6ff95c3f486d84f69693017c7e6190c7d arch=linux-rhel7-skylake | |
| [^] r5cvgru ^[email protected]%[email protected]~ilp64+shared threads=none arch=linux-rhel7-skylake | |
| [^] h2fsi6i ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] q5n7ofc ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] fudvy5v ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] 3333cwm ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> [email protected] : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-6s6wcfeanp2mkdib4c3n3ivkcuosopgm) | |
| ==> [email protected] : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-ucwiakreeghdgbo22kbqqhgnnlwxqtnn) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-vn2t5viljvtb5wyfhgmx57txyeiznxo4) | |
| ==> [email protected] : has external module in ['cuda/11.6.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cuda-11.6.1-ngetva (external cuda-11.6.1-gi5x2dn47i7nv76flbq7aatllxpaqmjp) | |
| ==> [email protected] : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-hyunzknktdzri34bx26bupkvapehonql) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/pkgconf-1.8.0-ihxi5r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-evtnqzdtuvprwnbd2nljimpzywrhw4uo) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/spdlog-1.9.2-x72vve | |
| ==> [email protected] : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-72xzp3vgzh5b424qevkfruhs3ajzqbiy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libyaml-0.2.5-xj2wla | |
| ==> [email protected] : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-ajxdymqhnzqgeuhvk5nu5zfymzq35n6i) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bzip2-1.0.8-eu2d6e (external bzip2-1.0.8-3rmq3zxuntsiphthnvty6gtydbmbkwr5) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libiconv-1.16-hxxlex | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/xz-5.2.5-jzpqn5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ncurses-6.2-nsve5x (external ncurses-6.2-ams67cxbq5vc7wiay2ndr2ksce2igbfw) | |
| [+] /usr (external tar-1.28-ir7xtblauhq3vtkpjrl7ou3nzevcsi3u) | |
| ==> [email protected] : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-cp3ofspgkdqaqih5vrhotmdwvkozfswp) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/intel-mkl-2020.4.304-rzr3hj (external intel-mkl-2020.4.304-r5cvgrurdnt6y267arsmmmgqi75ouxd2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/readline-8.1-we2frg (external readline-8.1-3333cwmykvahrsdydir4qeyasic3liq6) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/reportinglib-2.5.6-5fkun4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/hdf5-1.10.7-utj47f | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-toml-0.10.2-w4gddq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pluggy-0.13.0-mazoio | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-attrs-21.2.0-ascbei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-markupsafe-2.0.1-4ectow | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-iniconfig-1.1.1-kvw3vh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-py-1.9.0-y7rfzd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyparsing-2.4.7-c7qvw2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-57.4.0-v4z3s5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpmath-1.1.0-dzb2mf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyyaml-5.3.1-ci5oe5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libxml2-2.9.12-dnxqn2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libsonata-report-1.1-vutuzb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-jinja2-3.0.1-onq3mh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-packaging-21.0-7iyiyg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpi4py-3.1.2-n6q4vf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-cython-0.29.24-h2fsi6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-coverage-5.5-fudvy5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-sympy-1.8-xtett6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/gettext-0.21-iu2b5h | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-6.2.4-22arfs | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-numpy-1.19.5-gjm7kk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-cov-2.8.1-q5n7of | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/software/install_gcc-11.2.0-skylake/nmodl-develop-7hnncp | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/software/install_nvhpc-22.3-skylake/coreneuron-develop-7eavmc | |
| ==> Installing neuron-develop-aw3evwlkdey4vmmjzpsuscd3bnfgndfy | |
| ==> No binary for neuron-develop-aw3evwlkdey4vmmjzpsuscd3bnfgndfy found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472, but it is owned by 0 | |
| ==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| ==> neuron: Successfully installed neuron-develop-aw3evwlkdey4vmmjzpsuscd3bnfgndfy | |
| Fetch: 22.45s. Build: 28m 18.56s. Total: 28m 41.00s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/software/install_nvhpc-22.3-skylake/neuron-develop-aw3evw | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/379282/ccache | |
| Primary config: /nvme/bbpcihpcproj12/379282/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Apr 13 12:30:46 2022 | |
| Hits: 702 / 799 (87.86 %) | |
| Direct: 169 / 808 (20.92 %) | |
| Preprocessed: 533 / 633 (84.20 %) | |
| Misses: 97 | |
| Direct: 639 | |
| Preprocessed: 100 | |
| Uncacheable: 119 | |
| Primary storage: | |
| Hits: 1175 / 1610 (72.98 %) | |
| Misses: 435 | |
| Cache size (GB): 0.45 / 0.51 (88.12 %) | |
| Files: 26255 | |
| Cleanups: 3 | |
| Uncacheable: | |
| Autoconf compile/link: 7 | |
| Called for linking: 96 | |
| Called for preprocessing: 1 | |
| Compilation failed: 3 | |
| No input file: 6 | |
| Preprocessing failed: 6 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-scipy/1.7.1 | |
| Autoloading py-numpy/1.19.5 | |
| Autoloading py-mpi4py/3.1.2 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.4.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1649845848:step_script [0Ksection_start:1649845848:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:neuron:nmodl:nvhpc:acc-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=125157 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Aneuron%3Anmodl%3Anvhpc%3Aacc-8[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1649845866:archive_cache [0Ksection_start:1649845866:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=125563 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=211027 responseStatus[0;m=201 Created token[0;m=sQF2SFDP | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=125611 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=211027 responseStatus[0;m=201 Created token[0;m=sQF2SFDP | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=125667 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=211027 responseStatus[0;m=201 Created token[0;m=sQF2SFDP | |
| section_end:1649845867:upload_artifacts_on_success [0Ksection_start:1649845867:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1649845868:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1649844033:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1649844033:resolve_secrets [0Ksection_start:1649844033:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor758797407, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 48472, build ref 9a466a6e2a1c807e4d6045f3fc0b1fbaf51370b6, job ID 211026 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J211026_PROD_P112_CP8_C9 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 379284 | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J211026_PROD_P112_CP8_C9 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --ntasks=2 --jobid=379284 --cpus-per-task=8 --mem=76G | |
| section_end:1649844037:prepare_executor [0Ksection_start:1649844037:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i4n0 via bbpv1.epfl.ch... | |
| section_end:1649844039:prepare_script [0Ksection_start:1649844039:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1649844040:get_sources [0Ksection_start:1649844040:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:neuron:nmodl:nvhpc:omp-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=52046 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1649844047:restore_cache [0Ksection_start:1649844047:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:nmodl:nvhpc:omp (211021)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=52640 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=211021 responseStatus[0;m=200 OK token[0;m=Koj5cr-4 | |
| section_end:1649844048:download_artifacts [0Ksection_start:1649844048:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211026/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211026/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211026/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211026/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211026/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access [email protected] (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access [email protected] (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472/J211026_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = [email protected]:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = [email protected]: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%nvhpc +coreneuron+debug+tests~legacy-unit~rx3d model_tests=channel-benchmark,olfactory,tqperf-heavy ^/dqfui2d7qu3mc6w6xhrktts7kg2pjeio | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be 7rnzemtajzavcycpixj4vl565kzy3d6v | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/379284/ccache | |
| Primary config: /nvme/bbpcihpcproj12/379284/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Apr 13 12:01:13 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.46 / 0.51 (90.07 %) | |
| Files: 26966 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: '7rnzemtajzavcycpixj4vl565kzy3d6v' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%nvhpc+coreneuron+debug~legacy-unit~rx3d+tests model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| [+] ^coreneuron@develop%[email protected]~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl+openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]~allow-unsupported-compilers~dev arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [+] ^nmodl@develop%[email protected]~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]~i18n arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]+libyaml arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ^[email protected]%[email protected]~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - 7rnzemt neuron@develop%[email protected]+binary~caliper+cmake~codechecks+coreneuron~cross-compile+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+multisend~profile+pysetup+python~rx3d+shared+tests build_type=RelWithDebInfo model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c arch=linux-rhel7-skylake | |
| - 6s6wcfe ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| - ucwiakr ^[email protected]%[email protected]~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [+] dqfui2d ^coreneuron@develop%[email protected]~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl+openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] vn2t5vi ^[email protected]%[email protected]+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] gi5x2dn ^[email protected]%[email protected]~allow-unsupported-compilers~dev arch=linux-rhel7-skylake | |
| [^] hyunzkn ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] vutuzbn ^[email protected]%[email protected]~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] utj47fz ^[email protected]%[email protected]+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ihxi5rl ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] evtnqzd ^[email protected]%[email protected]+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] x72vveu ^[email protected]%[email protected]~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [+] 7hnncpj ^nmodl@develop%[email protected]~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] onq3mhg ^[email protected]%[email protected]~i18n arch=linux-rhel7-skylake | |
| [^] 4ectow5 ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] 72xzp3v ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] 22arfs4 ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ascbeii ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] kvw3vhm ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] 7iyiygo ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] c7qvw2q ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] mazoiox ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] y7rfzdj ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] v4z3s5e ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] w4gddqx ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ci5oe5b ^[email protected]%[email protected]+libyaml arch=linux-rhel7-skylake | |
| [^] xj2wlac ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] xtett6q ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] dzb2mfs ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] 5fkun4i ^[email protected]%[email protected]~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - ajxdymq ^[email protected]%[email protected]+lex~nls arch=linux-rhel7-skylake | |
| [^] iu2b5hx ^[email protected]%[email protected]+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel7-skylake | |
| [^] 3rmq3zx ^[email protected]%[email protected]~debug~pic+shared arch=linux-rhel7-skylake | |
| [^] hxxlexb ^[email protected]%[email protected] libs=shared,static arch=linux-rhel7-skylake | |
| [^] dnxqn2k ^[email protected]%[email protected]~python arch=linux-rhel7-skylake | |
| [^] jzpqn5y ^[email protected]%[email protected]~pic libs=shared,static arch=linux-rhel7-skylake | |
| [^] ams67cx ^[email protected]%[email protected]~symlinks+termlib abi=none arch=linux-rhel7-skylake | |
| [^] ir7xtbl ^[email protected]%[email protected] patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-skylake | |
| - cp3ofsp ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] n6q4vfz ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] gjm7kkq ^[email protected]%[email protected]+blas+lapack patches=8a9d5d1b3f145c043b8b04869e7d46c6ff95c3f486d84f69693017c7e6190c7d arch=linux-rhel7-skylake | |
| [^] r5cvgru ^[email protected]%[email protected]~ilp64+shared threads=none arch=linux-rhel7-skylake | |
| [^] h2fsi6i ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] q5n7ofc ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] fudvy5v ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] 3333cwm ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> [email protected] : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-6s6wcfeanp2mkdib4c3n3ivkcuosopgm) | |
| ==> [email protected] : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-ucwiakreeghdgbo22kbqqhgnnlwxqtnn) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-vn2t5viljvtb5wyfhgmx57txyeiznxo4) | |
| ==> [email protected] : has external module in ['cuda/11.6.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cuda-11.6.1-ngetva (external cuda-11.6.1-gi5x2dn47i7nv76flbq7aatllxpaqmjp) | |
| ==> [email protected] : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-hyunzknktdzri34bx26bupkvapehonql) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/pkgconf-1.8.0-ihxi5r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-evtnqzdtuvprwnbd2nljimpzywrhw4uo) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/spdlog-1.9.2-x72vve | |
| ==> [email protected] : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-72xzp3vgzh5b424qevkfruhs3ajzqbiy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libyaml-0.2.5-xj2wla | |
| ==> [email protected] : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-ajxdymqhnzqgeuhvk5nu5zfymzq35n6i) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bzip2-1.0.8-eu2d6e (external bzip2-1.0.8-3rmq3zxuntsiphthnvty6gtydbmbkwr5) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libiconv-1.16-hxxlex | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/xz-5.2.5-jzpqn5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ncurses-6.2-nsve5x (external ncurses-6.2-ams67cxbq5vc7wiay2ndr2ksce2igbfw) | |
| [+] /usr (external tar-1.28-ir7xtblauhq3vtkpjrl7ou3nzevcsi3u) | |
| ==> [email protected] : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-cp3ofspgkdqaqih5vrhotmdwvkozfswp) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/intel-mkl-2020.4.304-rzr3hj (external intel-mkl-2020.4.304-r5cvgrurdnt6y267arsmmmgqi75ouxd2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/readline-8.1-we2frg (external readline-8.1-3333cwmykvahrsdydir4qeyasic3liq6) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/reportinglib-2.5.6-5fkun4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/hdf5-1.10.7-utj47f | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-py-1.9.0-y7rfzd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyparsing-2.4.7-c7qvw2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pluggy-0.13.0-mazoio | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-attrs-21.2.0-ascbei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpmath-1.1.0-dzb2mf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-markupsafe-2.0.1-4ectow | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-iniconfig-1.1.1-kvw3vh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-toml-0.10.2-w4gddq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-57.4.0-v4z3s5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyyaml-5.3.1-ci5oe5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libxml2-2.9.12-dnxqn2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libsonata-report-1.1-vutuzb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-packaging-21.0-7iyiyg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-sympy-1.8-xtett6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-jinja2-3.0.1-onq3mh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-cython-0.29.24-h2fsi6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-coverage-5.5-fudvy5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpi4py-3.1.2-n6q4vf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/gettext-0.21-iu2b5h | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-6.2.4-22arfs | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-numpy-1.19.5-gjm7kk | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/software/install_gcc-11.2.0-skylake/nmodl-develop-7hnncp | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-cov-2.8.1-q5n7of | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/software/install_nvhpc-22.3-skylake/coreneuron-develop-dqfui2 | |
| ==> Installing neuron-develop-7rnzemtajzavcycpixj4vl565kzy3d6v | |
| ==> No binary for neuron-develop-7rnzemtajzavcycpixj4vl565kzy3d6v found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472, but it is owned by 0 | |
| ==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| ==> neuron: Successfully installed neuron-develop-7rnzemtajzavcycpixj4vl565kzy3d6v | |
| Fetch: 29.83s. Build: 27m 16.80s. Total: 27m 46.63s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/software/install_nvhpc-22.3-skylake/neuron-develop-7rnzem | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/379284/ccache | |
| Primary config: /nvme/bbpcihpcproj12/379284/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Apr 13 12:29:55 2022 | |
| Hits: 702 / 799 (87.86 %) | |
| Direct: 166 / 808 (20.54 %) | |
| Preprocessed: 536 / 636 (84.28 %) | |
| Misses: 97 | |
| Direct: 642 | |
| Preprocessed: 100 | |
| Uncacheable: 119 | |
| Primary storage: | |
| Hits: 1175 / 1610 (72.98 %) | |
| Misses: 435 | |
| Cache size (GB): 0.46 / 0.51 (90.76 %) | |
| Files: 27301 | |
| Uncacheable: | |
| Autoconf compile/link: 7 | |
| Called for linking: 96 | |
| Called for preprocessing: 1 | |
| Compilation failed: 3 | |
| No input file: 6 | |
| Preprocessing failed: 6 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-scipy/1.7.1 | |
| Autoloading py-numpy/1.19.5 | |
| Autoloading py-mpi4py/3.1.2 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.4.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1649845798:step_script [0Ksection_start:1649845798:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:neuron:nmodl:nvhpc:omp-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=121913 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Aneuron%3Anmodl%3Anvhpc%3Aomp-8[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1649845833:archive_cache [0Ksection_start:1649845833:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=124096 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=211026 responseStatus[0;m=201 Created token[0;m=Pm8KebQh | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=124123 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=211026 responseStatus[0;m=201 Created token[0;m=Pm8KebQh | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=124152 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=211026 responseStatus[0;m=201 Created token[0;m=Pm8KebQh | |
| section_end:1649845835:upload_artifacts_on_success [0Ksection_start:1649845835:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1649845835:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1649843396:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1649843396:resolve_secrets [0Ksection_start:1649843396:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor156994645, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 48472, build ref 9a466a6e2a1c807e4d6045f3fc0b1fbaf51370b6, job ID 211018 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J211018_PROD_P112_CP3_C2 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 379121 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J211018_PROD_P112_CP3_C2 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --ntasks=2 --jobid=379121 --cpus-per-task=8 --mem=76G | |
| section_end:1649843398:prepare_executor [0Ksection_start:1649843398:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r2i2n20 via bbpv1.epfl.ch... | |
| section_end:1649843400:prepare_script [0Ksection_start:1649843400:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1649843401:get_sources [0Ksection_start:1649843401:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:nmodl-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=231568 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1649843406:restore_cache [0Ksection_start:1649843406:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for spack_setup (211016)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=232053 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=211016 responseStatus[0;m=200 OK token[0;m=EkaigVme | |
| section_end:1649843407:download_artifacts [0Ksection_start:1649843407:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211018/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211018/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211018/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211018/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211018/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access [email protected] (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access [email protected] (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472/J211018_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = [email protected]:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = [email protected]: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install nmodl%gcc ~legacy-unit | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be 7hnncpjzlyqwesmjkszimpr4c2qteocr | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/379121/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/379121/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Apr 13 11:50:32 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.42 / 0.51 (82.69 %) | |
| Files: 965 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: '7hnncpjzlyqwesmjkszimpr4c2qteocr' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - nmodl%gcc~legacy-unit | |
| Concretized | |
| -------------------------------- | |
| - 7hnncpj nmodl@develop%[email protected]~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - cppb7al ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] 2qmvlfy ^[email protected]%[email protected]~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| - 4bt76dp ^[email protected]%[email protected]+lex~nls arch=linux-rhel7-skylake | |
| - utrxbc3 ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] onq3mhg ^[email protected]%[email protected]~i18n arch=linux-rhel7-skylake | |
| [^] 4ectow5 ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] v4z3s5e ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] 72xzp3v ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] 22arfs4 ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ascbeii ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] kvw3vhm ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] 7iyiygo ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] c7qvw2q ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] mazoiox ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ciusbmc ^[email protected]%[email protected]+toml arch=linux-rhel7-skylake | |
| [^] hmcew6w ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] sxd7srs ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] y7rfzdj ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] w4gddqx ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] ci5oe5b ^[email protected]%[email protected]+libyaml arch=linux-rhel7-skylake | |
| [^] xj2wlac ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] xtett6q ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [^] dzb2mfs ^[email protected]%[email protected] arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> [email protected] : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-cppb7alftvhxbedsuxqv72z2thjuoizw) | |
| ==> [email protected] : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-2qmvlfyylrv3t5ankluyr5cqey2nlfzd) | |
| ==> [email protected] : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-4bt76dpxbix6ep4qtz3mv5i2iddilv53) | |
| ==> [email protected] : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-utrxbc3aohnru5eynalc3hyv4ca4jqte) | |
| ==> [email protected] : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-72xzp3vgzh5b424qevkfruhs3ajzqbiy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libyaml-0.2.5-xj2wla | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpmath-1.1.0-dzb2mf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-57.4.0-v4z3s5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyyaml-5.3.1-ci5oe5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-sympy-1.8-xtett6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-toml-0.10.2-w4gddq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-attrs-21.2.0-ascbei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pip-21.1.2-sxd7sr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyparsing-2.4.7-c7qvw2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-iniconfig-1.1.1-kvw3vh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-markupsafe-2.0.1-4ectow | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-tomli-1.2.1-hmcew6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-packaging-21.0-7iyiyg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-jinja2-3.0.1-onq3mh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-scm-6.3.2-ciusbm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pluggy-0.13.0-mazoio | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-py-1.9.0-y7rfzd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-6.2.4-22arfs | |
| ==> Installing nmodl-develop-7hnncpjzlyqwesmjkszimpr4c2qteocr | |
| ==> No binary for nmodl-develop-7hnncpjzlyqwesmjkszimpr4c2qteocr found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472, but it is owned by 0 | |
| ==> No patches needed for nmodl | |
| ==> nmodl: Executing phase: 'cmake' | |
| ==> nmodl: Executing phase: 'build' | |
| ==> nmodl: Executing phase: 'install' | |
| ==> nmodl: Successfully installed nmodl-develop-7hnncpjzlyqwesmjkszimpr4c2qteocr | |
| Fetch: 32.37s. Build: 2m 10.79s. Total: 2m 43.17s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/software/install_gcc-11.2.0-skylake/nmodl-develop-7hnncp | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/379121/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/379121/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Apr 13 11:53:56 2022 | |
| Hits: 133 / 135 (98.52 %) | |
| Direct: 31 / 135 (22.96 %) | |
| Preprocessed: 102 / 104 (98.08 %) | |
| Misses: 2 | |
| Direct: 104 | |
| Preprocessed: 2 | |
| Uncacheable: 27 | |
| Primary storage: | |
| Hits: 164 / 270 (60.74 %) | |
| Misses: 106 | |
| Cache size (GB): 0.43 / 0.51 (83.36 %) | |
| Files: 969 | |
| Uncacheable: | |
| Called for linking: 26 | |
| No input file: 1 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-scipy/1.7.1 | |
| Autoloading py-numpy/1.19.5 | |
| Autoloading py-mpi4py/3.1.2 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.4.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1649843638:step_script [0Ksection_start:1649843638:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:nmodl-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=242840 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Anmodl-8[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1649843657:archive_cache [0Ksection_start:1649843657:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=243038 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=211018 responseStatus[0;m=201 Created token[0;m=8Sk4MWSK | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=243078 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=211018 responseStatus[0;m=201 Created token[0;m=8Sk4MWSK | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=243120 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=211018 responseStatus[0;m=201 Created token[0;m=8Sk4MWSK | |
| section_end:1649843659:upload_artifacts_on_success [0Ksection_start:1649843659:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1649843659:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| ! |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1649843322:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1649843322:resolve_secrets [0Ksection_start:1649843322:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor045036810, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 48472, build ref 9a466a6e2a1c807e4d6045f3fc0b1fbaf51370b6, job ID 211016 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472, optional exclusive flag , optional cpus per task flag --cpus-per-task=6, optional qos flag | |
| A slurm job will be created with name GL_J211016_PROD_P112_CP3_C2 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 379108 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=1 --cpus-per-task=6 --mem=30750M --job-name=GL_J211016_PROD_P112_CP3_C2 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --ntasks=1 --jobid=379108 --cpus-per-task=6 --mem=30750M | |
| section_end:1649843323:prepare_executor [0Ksection_start:1649843323:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r2i2n22 via bbpv1.epfl.ch... | |
| section_end:1649843324:prepare_script [0Ksection_start:1649843324:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1649843325:get_sources [0Ksection_start:1649843325:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ if [[ -n "${SPACK_ENV_FILE_URL}" && "${PARSE_GITHUB_PR_DESCRIPTIONS,,}" == "true" ]]; then[0;m | |
| [32;1m$ cat > parse_description.py << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ cat parse_description.py[0;m | |
| import os | |
| import re | |
| import requests | |
| pr_info = requests.get("https://api.github.com/repos/{}/pulls/{}".format( | |
| os.environ['CI_EXTERNAL_PULL_REQUEST_TARGET_REPOSITORY'], | |
| os.environ['CI_EXTERNAL_PULL_REQUEST_IID']), | |
| headers={'Accept': 'application/vnd.github.v3+json'}) | |
| pr_body = pr_info.json()["body"] | |
| # match something like NEURON_BRANCH=foo/bar | |
| pat = re.compile('^([A-Z0-9_]+)_([A-Z]+)=([A-Z0-9\-\_\/\+]+)$', re.IGNORECASE) | |
| def parse_term(m): | |
| ref_type = m.group(2).lower() | |
| if ref_type not in {'branch', 'tag', 'ref'}: return | |
| print(m.group(1).upper() + '_' + ref_type.upper() + '=' + m.group(3)) | |
| if pr_body is not None: | |
| for pr_body_line in pr_body.splitlines(): | |
| if not pr_body_line.startswith('CI_BRANCHES:'): continue | |
| for config_term in pr_body_line[12:].split(','): | |
| pat.sub(parse_term, config_term) | |
| [32;1m$ (module load unstable python-dev; python parse_description.py) > input_variables.env[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-scipy/1.7.1 | |
| Autoloading py-numpy/1.19.5 | |
| Autoloading py-mpi4py/3.1.2 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.4.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ else[0;m | |
| [32;1m$ cat input_variables.env[0;m | |
| NEURON_BRANCH=master | |
| NMODL_BRANCH=master | |
| SPACK_BRANCH=develop | |
| [32;1m$ for var_to_unset in $(sed 's/^\(.*\?\)_\(BRANCH\|COMMIT\|TAG\)=.*$/\1_BRANCH\n\1_COMMIT\n\1_TAG/' input_variables.env); do # collapsed multi-line command[0;m | |
| Unsetting NEURON_BRANCH | |
| Unsetting NMODL_BRANCH | |
| Unsetting SPACK_BRANCH | |
| [32;1m$ set -o allexport[0;m | |
| [32;1m$ . input_variables.env[0;m | |
| [32;1m$ set +o allexport[0;m | |
| [32;1m$ unset MODULEPATH[0;m | |
| [32;1m$ . /gpfs/bbp.cscs.ch/ssd/apps/bsd/${SPACK_DEPLOYMENT_SUFFIX}/config/modules.sh[0;m | |
| [32;1m$ echo "MODULEPATH=${MODULEPATH}" > spack_clone_variables.env[0;m | |
| [32;1m$ echo Preparing to clone Spack into ${PWD}[0;m | |
| Preparing to clone Spack into /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211016 | |
| [32;1m$ if [[ -z "${SPACK_BRANCH}" && ( -n "${SPACK_COMMIT}" || -n "${SPACK_TAG}" ) ]]; then[0;m | |
| [32;1m$ echo Checking out the ${SPACK_BRANCH} of Spack...[0;m | |
| Checking out the develop of Spack... | |
| [32;1m$ module load unstable git[0;m | |
| [32;1m$ git clone -c feature.manyFiles=true --depth 1 --single-branch --branch ${SPACK_BRANCH} ${SPACK_URL} spack[0;m | |
| Cloning into 'spack'... | |
| Updating files: 17% (1577/9135) Updating files: 18% (1645/9135) Updating files: 19% (1736/9135) Updating files: 20% (1827/9135) Updating files: 21% (1919/9135) Updating files: 22% (2010/9135) Updating files: 23% (2102/9135) Updating files: 24% (2193/9135) Updating files: 25% (2284/9135) Updating files: 26% (2376/9135) Updating files: 27% (2467/9135) Updating files: 27% (2476/9135) Updating files: 28% (2558/9135) Updating files: 29% (2650/9135) Updating files: 30% (2741/9135) Updating files: 31% (2832/9135) Updating files: 32% (2924/9135) Updating files: 33% (3015/9135) Updating files: 34% (3106/9135) Updating files: 35% (3198/9135) Updating files: 36% (3289/9135) Updating files: 37% (3380/9135) Updating files: 38% (3472/9135) Updating files: 39% (3563/9135) Updating files: 40% (3654/9135) Updating files: 41% (3746/9135) Updating files: 42% (3837/9135) Updating files: 43% (3929/9135) Updating files: 44% (4020/9135) Updating files: 44% (4056/9135) Updating files: 45% (4111/9135) Updating files: 46% (4203/9135) Updating files: 47% (4294/9135) Updating files: 48% (4385/9135) Updating files: 49% (4477/9135) Updating files: 50% (4568/9135) Updating files: 51% (4659/9135) Updating files: 52% (4751/9135) Updating files: 53% (4842/9135) Updating files: 54% (4933/9135) Updating files: 55% (5025/9135) Updating files: 56% (5116/9135) Updating files: 57% (5207/9135) Updating files: 58% (5299/9135) Updating files: 59% (5390/9135) Updating files: 59% (5453/9135) Updating files: 60% (5481/9135) Updating files: 61% (5573/9135) Updating files: 62% (5664/9135) Updating files: 63% (5756/9135) Updating files: 64% (5847/9135) Updating files: 65% (5938/9135) Updating files: 66% (6030/9135) Updating files: 67% (6121/9135) Updating files: 68% (6212/9135) Updating files: 69% (6304/9135) Updating files: 70% (6395/9135) Updating files: 71% (6486/9135) Updating files: 72% (6578/9135) Updating files: 72% (6654/9135) Updating files: 73% (6669/9135) Updating files: 74% (6760/9135) Updating files: 75% (6852/9135) Updating files: 76% (6943/9135) Updating files: 77% (7034/9135) Updating files: 78% (7126/9135) Updating files: 79% (7217/9135) Updating files: 80% (7308/9135) Updating files: 81% (7400/9135) Updating files: 82% (7491/9135) Updating files: 83% (7583/9135) Updating files: 84% (7674/9135) Updating files: 85% (7765/9135) Updating files: 86% (7857/9135) Updating files: 87% (7948/9135) Updating files: 88% (8039/9135) Updating files: 89% (8131/9135) Updating files: 90% (8222/9135) Updating files: 91% (8313/9135) Updating files: 91% (8354/9135) Updating files: 92% (8405/9135) Updating files: 93% (8496/9135) Updating files: 94% (8587/9135) Updating files: 95% (8679/9135) Updating files: 96% (8770/9135) Updating files: 97% (8861/9135) Updating files: 98% (8953/9135) Updating files: 99% (9044/9135) Updating files: 100% (9135/9135) Updating files: 100% (9135/9135), done. | |
| [32;1m$ export SPACK_ROOT=${PWD}/spack[0;m | |
| [32;1m$ export SPACK_USER_CACHE_PATH="${CI_BUILDS_DIR}"[0;m | |
| [32;1m$ export SPACK_SYSTEM_CONFIG_PATH="/gpfs/bbp.cscs.ch/ssd/apps/bsd/${SPACK_DEPLOYMENT_SUFFIX}/config"[0;m | |
| [32;1m$ echo "SPACK_ROOT=${SPACK_ROOT}" >> spack_clone_variables.env[0;m | |
| [32;1m$ echo "SPACK_USER_CACHE_PATH=${SPACK_USER_CACHE_PATH}" >> spack_clone_variables.env[0;m | |
| [32;1m$ echo "SPACK_SYSTEM_CONFIG_PATH=${SPACK_SYSTEM_CONFIG_PATH}" >> spack_clone_variables.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access [email protected] (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access [email protected] (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472/J211016_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = [email protected]:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = [email protected]: | |
| [32;1m$ env -0 | sed -nz '/^CUSTOM_ENV_/d;/^[^=]\+_\(BRANCH\|COMMIT\|TAG\)=.\+/p' | xargs -0t spack configure-pipeline --ignore-packages CI_BUILD CI_COMMIT CI_DEFAULT GITLAB_PIPELINES SPACK ${SPACK_SETUP_IGNORE_PACKAGE_VARIABLES} --write-commit-file=commit-mapping.env[0;m | |
| spack configure-pipeline --ignore-packages CI_BUILD CI_COMMIT CI_DEFAULT GITLAB_PIPELINES SPACK --write-commit-file=commit-mapping.env CI_COMMIT_BRANCH=olupton/random123-as-openacc GITLAB_PIPELINES_BRANCH=main NEURON_BRANCH=master NMODL_BRANCH=master SPACK_BRANCH=develop CI_DEFAULT_BRANCH=master CORENEURON_COMMIT=9a466a6e2a1c807e4d6045f3fc0b1fbaf51370b6 | |
| ==> CI_COMMIT: ignoring CI_COMMIT_BRANCH=olupton/random123-as-openacc | |
| ==> GITLAB_PIPELINES: ignoring GITLAB_PIPELINES_BRANCH=main | |
| ==> SPACK: ignoring SPACK_BRANCH=develop | |
| ==> CI_DEFAULT: ignoring CI_DEFAULT_BRANCH=master | |
| ==> neuron: resolved branch master to 991863f0c0488f17c0b489ab5bcc3e21cb3b3326 | |
| ==> nmodl: resolved branch master to cde5dbf02fe93bb1b0b8cc9b5a6ebe0747ab8720 | |
| ==> neuron@develop: remove branch/commit/tag | |
| ==> neuron@develop: use commit="991863f0c0488f17c0b489ab5bcc3e21cb3b3326" | |
| ==> neuron@develop: add preferred=True | |
| ==> nmodl@develop: remove branch/commit/tag | |
| ==> nmodl@develop: use commit="cde5dbf02fe93bb1b0b8cc9b5a6ebe0747ab8720" | |
| ==> nmodl@develop: add preferred=True | |
| ==> coreneuron@develop: remove branch/commit/tag | |
| ==> coreneuron@develop: use commit="9a466a6e2a1c807e4d6045f3fc0b1fbaf51370b6" | |
| ==> coreneuron@develop: add preferred=True | |
| [32;1m$ (cd "${SPACK_ROOT}" && git diff)[0;m | |
| diff --git a/bluebrain/repo-bluebrain/packages/coreneuron/package.py b/bluebrain/repo-bluebrain/packages/coreneuron/package.py | |
| index 88e0cc5..2d0b97d 100644 | |
| --- a/bluebrain/repo-bluebrain/packages/coreneuron/package.py | |
| +++ b/bluebrain/repo-bluebrain/packages/coreneuron/package.py | |
| @@ -20,7 +20,7 @@ class Coreneuron(CMakePackage): | |
| # This simplifies testing the gitlab-pipelines repository: | |
| git = "[email protected]:hpc/coreneuron.git" | |
| - version('develop', branch='master') | |
| + version('develop', preferred=True, commit='9a466a6e2a1c807e4d6045f3fc0b1fbaf51370b6') # old: branch='master' | |
| # 1.0.1 > 1.0.0.20210519 > 1.0 as far as Spack is concerned | |
| version('1.0.0.20220304', commit='2d08705') | |
| version('1.0.0.20220218', commit='102ebde') | |
| diff --git a/bluebrain/repo-bluebrain/packages/nmodl/package.py b/bluebrain/repo-bluebrain/packages/nmodl/package.py | |
| index 9e6c5ce..544ef43 100644 | |
| --- a/bluebrain/repo-bluebrain/packages/nmodl/package.py | |
| +++ b/bluebrain/repo-bluebrain/packages/nmodl/package.py | |
| @@ -14,7 +14,7 @@ class Nmodl(CMakePackage): | |
| git = "https://github.com/BlueBrain/nmodl.git" | |
| # 0.3.1 > 0.3.0.20220110 > 0.3.0 > 0.3b > 0.3 to Spack | |
| - version('develop', branch='master', submodules=True) | |
| + version('develop', preferred=True, commit='cde5dbf02fe93bb1b0b8cc9b5a6ebe0747ab8720', submodules=True) # old: branch='master' | |
| version('llvm', branch='llvm', submodules=True) | |
| # For deployment; [email protected]%[email protected] doesn't build with eigen/intrinsics errors | |
| version('0.3.0.20220110', commit='9e0a6f260ac2e6fad068a39ea3bdf7aa7a6f4ee0') | |
| diff --git a/bluebrain/repo-patches/packages/neuron/package.py b/bluebrain/repo-patches/packages/neuron/package.py | |
| index 3f44d8c..e5c7785 100644 | |
| --- a/bluebrain/repo-patches/packages/neuron/package.py | |
| +++ b/bluebrain/repo-patches/packages/neuron/package.py | |
| @@ -34,7 +34,7 @@ class Neuron(CMakePackage): | |
| # Patch for recent CMake versions that don't identify NVHPC as PGI | |
| patch("patch-v800-cmake-nvhpc.patch", when="@8.0.0%nvhpc^[email protected]:") | |
| - version("develop", branch="master") | |
| + version('develop', preferred=True, commit='991863f0c0488f17c0b489ab5bcc3e21cb3b3326') # old: branch="master" | |
| version("8.0.2", tag="8.0.2") | |
| version("8.0.1", tag="8.0.1") | |
| version("8.0.0", tag="8.0.0") | |
| [32;1m$ cat commit-mapping.env[0;m | |
| NEURON_COMMIT=991863f0c0488f17c0b489ab5bcc3e21cb3b3326 | |
| NMODL_COMMIT=cde5dbf02fe93bb1b0b8cc9b5a6ebe0747ab8720 | |
| CORENEURON_COMMIT=9a466a6e2a1c807e4d6045f3fc0b1fbaf51370b6 | |
| [32;1m$ echo "SPACK_BRANCH=${SPACK_BRANCH}" >> commit-mapping.env[0;m | |
| [32;1m$ echo "SPACK_DEPLOYMENT_SUFFIX=${SPACK_DEPLOYMENT_SUFFIX}" >> commit-mapping.env[0;m | |
| [32;1m$ cat commit-mapping.env >> spack_clone_variables.env[0;m | |
| [32;1m$ spack spec -IL ninja[0;m | |
| Input spec | |
| -------------------------------- | |
| - ninja | |
| Concretized | |
| -------------------------------- | |
| ==> Bootstrapping clingo from pre-built binaries | |
| - utrxbc3aohnru5eynalc3hyv4ca4jqte [email protected]%[email protected] arch=linux-rhel7-skylake | |
| [32;1m$ echo "SPACK_SETUP_COMMIT_MAPPING_URL=${CI_API_V4_URL}/projects/${CI_PROJECT_ID}/jobs/${CI_JOB_ID}/artifacts/commit-mapping.env" >> spack_clone_variables.env[0;m | |
| [32;1m$ spack config --scope site add "config:ccache:true"[0;m | |
| [32;1m$ echo "SPACK_USE_CCACHE=true" >> spack_clone_variables.env[0;m | |
| section_end:1649843392:step_script [0Ksection_start:1649843392:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=151785 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| commit-mapping.env: found 1 matching files and directories[0;m | |
| input_variables.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=211016 responseStatus[0;m=201 Created token[0;m=EkaigVme | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=151810 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=211016 responseStatus[0;m=201 Created token[0;m=EkaigVme | |
| section_end:1649843394:upload_artifacts_on_success [0Ksection_start:1649843394:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1649843394:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1649843541:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1649843541:resolve_secrets [0Ksection_start:1649843541:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor702901559, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 48472, build ref 9a466a6e2a1c807e4d6045f3fc0b1fbaf51370b6, job ID 211034 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag | |
| A slurm job will be created with name GL_J211034_PROD_P112_CP7_C16 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 379164 | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M --job-name=GL_J211034_PROD_P112_CP7_C16 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --ntasks=8 --jobid=379164 --cpus-per-task=1 --mem=30750M | |
| section_end:1649843544:prepare_executor [0Ksection_start:1649843544:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i7n21 via bbpv1.epfl.ch... | |
| section_end:1649843547:prepare_script [0Ksection_start:1649843547:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1649843548:get_sources [0Ksection_start:1649843548:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:mod2c:intel (211023)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=8128 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=211023 responseStatus[0;m=200 OK token[0;m=SAThh_5K | |
| section_end:1649843549:download_artifacts [0Ksection_start:1649843549:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r2i2n21 | |
| Build name: Linux-icpc | |
| Create new tag: 20220413-0952 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211023/spack-build/spack-stage-coreneuron-develop-hsyhen5wbojr4dsx5rf32wndj3dpm5nb/spack-build-hsyhen5 | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| Start 3: alignment_test | |
| Start 4: queuing_test | |
| Start 5: lfp_test | |
| Start 6: ring_TEST | |
| Start 17: reporting_1 | |
| 1/17 Test #1: cmd_interface_test ................. Passed 1.37 sec | |
| 2/17 Test #2: interleave_info_constructor_test ... Passed 1.53 sec | |
| Start 7: ring_binqueue_TEST | |
| 3/17 Test #6: ring_TEST .......................... Passed 1.74 sec | |
| Start 8: ring_multisend_TEST | |
| 4/17 Test #3: alignment_test ..................... Passed 1.83 sec | |
| 5/17 Test #17: reporting_1 ........................ Passed 1.92 sec | |
| Start 9: ring_spike_buffer_TEST | |
| 6/17 Test #4: queuing_test ....................... Passed 2.05 sec | |
| 7/17 Test #5: lfp_test ........................... Passed 2.27 sec | |
| Start 10: ring_permute1_TEST | |
| 8/17 Test #7: ring_binqueue_TEST ................. Passed 1.13 sec | |
| Start 11: ring_permute2_TEST | |
| 9/17 Test #8: ring_multisend_TEST ................ Passed 1.11 sec | |
| Start 12: ring_gap_TEST | |
| 10/17 Test #10: ring_permute1_TEST ................. Passed 1.26 sec | |
| Start 13: ring_gap_binqueue_TEST | |
| 11/17 Test #11: ring_permute2_TEST ................. Passed 2.02 sec | |
| Start 14: ring_gap_multisend_TEST | |
| 12/17 Test #12: ring_gap_TEST ...................... Passed 1.98 sec | |
| Start 15: ring_gap_permute1_TEST | |
| 13/17 Test #9: ring_spike_buffer_TEST ............. Passed 3.01 sec | |
| Start 16: ring_gap_permute2_TEST | |
| 14/17 Test #13: ring_gap_binqueue_TEST ............. Passed 1.41 sec | |
| 15/17 Test #14: ring_gap_multisend_TEST ............ Passed 1.87 sec | |
| 16/17 Test #15: ring_gap_permute1_TEST ............. Passed 4.74 sec | |
| 17/17 Test #16: ring_gap_permute2_TEST ............. Passed 4.69 sec | |
| 100% tests passed, 0 tests failed out of 17 | |
| Total Test time (real) = 9.65 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1649843585:step_script [0Ksection_start:1649843585:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=10621 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=211034 responseStatus[0;m=201 Created token[0;m=w8yV_MWy | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=10653 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=211034 responseStatus[0;m=201 Created token[0;m=w8yV_MWy | |
| section_end:1649843587:upload_artifacts_on_success [0Ksection_start:1649843587:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1649843588:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1649843621:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1649843621:resolve_secrets [0Ksection_start:1649843621:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor127641747, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 48472, build ref 9a466a6e2a1c807e4d6045f3fc0b1fbaf51370b6, job ID 211031 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag | |
| A slurm job will be created with name GL_J211031_PROD_P112_CP4_C3 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| Submitted batch job 379199 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M --job-name=GL_J211031_PROD_P112_CP4_C3 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --ntasks=8 --jobid=379199 --cpus-per-task=1 --mem=30750M | |
| section_end:1649843623:prepare_executor [0Ksection_start:1649843623:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on ldir01u09.bbp.epfl.ch via bbpv1.epfl.ch... | |
| section_end:1649843630:prepare_script [0Ksection_start:1649843630:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1649843631:get_sources [0Ksection_start:1649843631:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:mod2c:nvhpc:acc:unified (211020)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=11819 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=211020 responseStatus[0;m=200 OK token[0;m=ihHsmuMo | |
| section_end:1649843632:download_artifacts [0Ksection_start:1649843632:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r2i2n20 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20220413-0954 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211020/spack-build/spack-stage-coreneuron-develop-knqybtff3rwigwjx34v3sgxt6qlziega/spack-build-knqybtf | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| Start 3: alignment_test | |
| Start 4: queuing_test | |
| Start 5: lfp_test | |
| Start 6: ring_TEST | |
| Start 19: reporting_1 | |
| 1/19 Test #4: queuing_test ........................... Passed 1.69 sec | |
| 2/19 Test #5: lfp_test ............................... Passed 1.97 sec | |
| Start 7: ring_binqueue_TEST | |
| 3/19 Test #1: cmd_interface_test ..................... Passed 2.43 sec | |
| 4/19 Test #2: interleave_info_constructor_test ....... Passed 70.13 sec | |
| Start 8: ring_multisend_TEST | |
| 5/19 Test #6: ring_TEST .............................. Passed 74.66 sec | |
| Start 9: ring_spike_buffer_TEST | |
| 6/19 Test #19: reporting_1 ............................ Passed 78.12 sec | |
| 7/19 Test #3: alignment_test ......................... Passed 79.15 sec | |
| Start 10: ring_permute1_TEST | |
| 8/19 Test #7: ring_binqueue_TEST ..................... Passed 86.91 sec | |
| Start 11: ring_permute2_TEST | |
| 9/19 Test #9: ring_spike_buffer_TEST ................. Passed 67.63 sec | |
| Start 12: ring_gap_TEST | |
| 10/19 Test #10: ring_permute1_TEST ..................... Passed 63.18 sec | |
| Start 13: ring_gap_binqueue_TEST | |
| 11/19 Test #8: ring_multisend_TEST .................... Passed 72.25 sec | |
| Start 14: ring_gap_multisend_TEST | |
| 12/19 Test #11: ring_permute2_TEST ..................... Passed 53.91 sec | |
| Start 15: ring_gap_permute1_TEST | |
| 13/19 Test #13: ring_gap_binqueue_TEST ................. Passed 308.14 sec | |
| Start 16: ring_gap_permute2_TEST | |
| 14/19 Test #15: ring_gap_permute1_TEST ................. Passed 307.74 sec | |
| Start 17: ring_permute2_cudaInterface_TEST | |
| 15/19 Test #14: ring_gap_multisend_TEST ................ Passed 309.30 sec | |
| Start 18: ring_gap_permute2_cudaInterface_TEST | |
| 16/19 Test #12: ring_gap_TEST .......................... Passed 309.57 sec | |
| 17/19 Test #17: ring_permute2_cudaInterface_TEST ....... Passed 32.55 sec | |
| 18/19 Test #18: ring_gap_permute2_cudaInterface_TEST ... Passed 59.20 sec | |
| 19/19 Test #16: ring_gap_permute2_TEST ................. Passed 61.63 sec | |
| 100% tests passed, 0 tests failed out of 19 | |
| Total Test time (real) = 512.13 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1649844171:step_script [0Ksection_start:1649844171:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=31709 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=211031 responseStatus[0;m=201 Created token[0;m=qHjYRuuq | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=31773 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=211031 responseStatus[0;m=201 Created token[0;m=qHjYRuuq | |
| section_end:1649844172:upload_artifacts_on_success [0Ksection_start:1649844172:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1649844173:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1649843622:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1649843622:resolve_secrets [0Ksection_start:1649843622:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor429934455, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 48472, build ref 9a466a6e2a1c807e4d6045f3fc0b1fbaf51370b6, job ID 211030 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag | |
| A slurm job will be created with name GL_J211030_PROD_P112_CP7_C11 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| Submitted batch job 379201 | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M --job-name=GL_J211030_PROD_P112_CP7_C11 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --ntasks=8 --jobid=379201 --cpus-per-task=1 --mem=30750M | |
| section_end:1649843625:prepare_executor [0Ksection_start:1649843625:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on ldir01u09.bbp.epfl.ch via bbpv1.epfl.ch... | |
| section_end:1649843633:prepare_script [0Ksection_start:1649843633:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1649843634:get_sources [0Ksection_start:1649843634:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:mod2c:nvhpc:acc (211019)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=12418 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=211019 responseStatus[0;m=200 OK token[0;m=Qw7KHaR5 | |
| section_end:1649843635:download_artifacts [0Ksection_start:1649843635:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r2i2n20 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20220413-0954 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211019/spack-build/spack-stage-coreneuron-develop-myaj5gmcll4sywf66372ze5qfubwzr3s/spack-build-myaj5gm | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| Start 3: alignment_test | |
| Start 4: queuing_test | |
| Start 5: lfp_test | |
| Start 6: ring_TEST | |
| Start 19: reporting_1 | |
| 1/19 Test #2: interleave_info_constructor_test ....... Passed 1.33 sec | |
| 2/19 Test #1: cmd_interface_test ..................... Passed 2.02 sec | |
| Start 7: ring_binqueue_TEST | |
| 3/19 Test #3: alignment_test ......................... Passed 2.14 sec | |
| 4/19 Test #4: queuing_test ........................... Passed 2.31 sec | |
| Start 8: ring_multisend_TEST | |
| 5/19 Test #5: lfp_test ............................... Passed 3.73 sec | |
| 6/19 Test #19: reporting_1 ............................ Passed 87.18 sec | |
| Start 9: ring_spike_buffer_TEST | |
| 7/19 Test #7: ring_binqueue_TEST ..................... Passed 85.98 sec | |
| Start 10: ring_permute1_TEST | |
| 8/19 Test #6: ring_TEST .............................. Passed 88.04 sec | |
| Start 11: ring_permute2_TEST | |
| 9/19 Test #8: ring_multisend_TEST .................... Passed 85.77 sec | |
| Start 12: ring_gap_TEST | |
| 10/19 Test #9: ring_spike_buffer_TEST ................. Passed 58.34 sec | |
| Start 13: ring_gap_binqueue_TEST | |
| 11/19 Test #11: ring_permute2_TEST ..................... Passed 57.55 sec | |
| Start 14: ring_gap_multisend_TEST | |
| 12/19 Test #12: ring_gap_TEST .......................... Passed 73.86 sec | |
| Start 15: ring_gap_permute1_TEST | |
| 13/19 Test #10: ring_permute1_TEST ..................... Passed 87.11 sec | |
| Start 16: ring_gap_permute2_TEST | |
| 14/19 Test #15: ring_gap_permute1_TEST ................. Passed 33.62 sec | |
| Start 17: ring_permute2_cudaInterface_TEST | |
| 15/19 Test #14: ring_gap_multisend_TEST ................ Passed 57.76 sec | |
| Start 18: ring_gap_permute2_cudaInterface_TEST | |
| 16/19 Test #13: ring_gap_binqueue_TEST ................. Passed 57.90 sec | |
| 17/19 Test #16: ring_gap_permute2_TEST ................. Passed 42.96 sec | |
| 18/19 Test #17: ring_permute2_cudaInterface_TEST ....... Passed 50.13 sec | |
| 19/19 Test #18: ring_gap_permute2_cudaInterface_TEST ... Passed 55.27 sec | |
| 100% tests passed, 0 tests failed out of 19 | |
| Total Test time (real) = 258.78 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1649843919:step_script [0Ksection_start:1649843919:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=22463 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=211030 responseStatus[0;m=201 Created token[0;m=jNC4Lzir | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=22495 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=211030 responseStatus[0;m=201 Created token[0;m=jNC4Lzir | |
| section_end:1649843920:upload_artifacts_on_success [0Ksection_start:1649843920:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1649843921:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1649843982:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1649843982:resolve_secrets [0Ksection_start:1649843982:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor647393288, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 48472, build ref 9a466a6e2a1c807e4d6045f3fc0b1fbaf51370b6, job ID 211035 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag | |
| A slurm job will be created with name GL_J211035_PROD_P112_CP7_C9 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 379275 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M --job-name=GL_J211035_PROD_P112_CP7_C9 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --ntasks=8 --jobid=379275 --cpus-per-task=1 --mem=30750M | |
| section_end:1649843984:prepare_executor [0Ksection_start:1649843984:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i4n5 via bbpv1.epfl.ch... | |
| section_end:1649843986:prepare_script [0Ksection_start:1649843986:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1649843987:get_sources [0Ksection_start:1649843987:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:nmodl:intel (211024)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=231021 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=211024 responseStatus[0;m=200 OK token[0;m=ym6v9xs- | |
| section_end:1649843988:download_artifacts [0Ksection_start:1649843988:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r5i0n34 | |
| Build name: Linux-icpc | |
| Create new tag: 20220413-1000 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211024/spack-build/spack-stage-coreneuron-develop-x2m7t35nswt5wf62dii5jjfu45snneyv/spack-build-x2m7t35 | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| Start 3: alignment_test | |
| Start 4: queuing_test | |
| Start 5: lfp_test | |
| Start 6: ring_TEST | |
| Start 17: reporting_1 | |
| 1/17 Test #3: alignment_test ..................... Passed 2.26 sec | |
| 2/17 Test #1: cmd_interface_test ................. Passed 2.50 sec | |
| Start 7: ring_binqueue_TEST | |
| 3/17 Test #2: interleave_info_constructor_test ... Passed 2.67 sec | |
| 4/17 Test #4: queuing_test ....................... Passed 2.69 sec | |
| Start 8: ring_multisend_TEST | |
| 5/17 Test #5: lfp_test ........................... Passed 2.80 sec | |
| 6/17 Test #17: reporting_1 ........................ Passed 2.90 sec | |
| Start 9: ring_spike_buffer_TEST | |
| 7/17 Test #6: ring_TEST .......................... Passed 2.93 sec | |
| Start 10: ring_permute1_TEST | |
| 8/17 Test #7: ring_binqueue_TEST ................. Passed 1.21 sec | |
| Start 11: ring_permute2_TEST | |
| 9/17 Test #8: ring_multisend_TEST ................ Passed 1.89 sec | |
| Start 12: ring_gap_TEST | |
| 10/17 Test #9: ring_spike_buffer_TEST ............. Passed 2.70 sec | |
| Start 13: ring_gap_binqueue_TEST | |
| 11/17 Test #10: ring_permute1_TEST ................. Passed 2.70 sec | |
| Start 14: ring_gap_multisend_TEST | |
| 12/17 Test #11: ring_permute2_TEST ................. Passed 2.66 sec | |
| Start 15: ring_gap_permute1_TEST | |
| 13/17 Test #12: ring_gap_TEST ...................... Passed 1.84 sec | |
| Start 16: ring_gap_permute2_TEST | |
| 14/17 Test #13: ring_gap_binqueue_TEST ............. Passed 1.43 sec | |
| 15/17 Test #14: ring_gap_multisend_TEST ............ Passed 1.90 sec | |
| 16/17 Test #15: ring_gap_permute1_TEST ............. Passed 1.96 sec | |
| 17/17 Test #16: ring_gap_permute2_TEST ............. Passed 1.95 sec | |
| 100% tests passed, 0 tests failed out of 17 | |
| Total Test time (real) = 8.40 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1649844025:step_script [0Ksection_start:1649844025:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=232650 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=211035 responseStatus[0;m=201 Created token[0;m=-VUszuXZ | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=232682 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=211035 responseStatus[0;m=201 Created token[0;m=-VUszuXZ | |
| section_end:1649844027:upload_artifacts_on_success [0Ksection_start:1649844027:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1649844028:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1649844033:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1649844033:resolve_secrets [0Ksection_start:1649844033:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor820945637, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 48472, build ref 9a466a6e2a1c807e4d6045f3fc0b1fbaf51370b6, job ID 211033 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag | |
| A slurm job will be created with name GL_J211033_PROD_P112_CP7_C7 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| Submitted batch job 379283 | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M --job-name=GL_J211033_PROD_P112_CP7_C7 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --ntasks=8 --jobid=379283 --cpus-per-task=1 --mem=30750M | |
| section_end:1649844036:prepare_executor [0Ksection_start:1649844036:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on ldir01u09.bbp.epfl.ch via bbpv1.epfl.ch... | |
| section_end:1649844045:prepare_script [0Ksection_start:1649844045:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1649844047:get_sources [0Ksection_start:1649844047:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:nmodl:nvhpc:acc (211022)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=28013 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=211022 responseStatus[0;m=200 OK token[0;m=T5xFNgyz | |
| section_end:1649844048:download_artifacts [0Ksection_start:1649844048:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i4n0 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20220413-1001 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211022/spack-build/spack-stage-coreneuron-develop-7eavmcfdqg53mknhnfbcd3xnco2pxk7o/spack-build-7eavmcf | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| Start 3: alignment_test | |
| Start 4: queuing_test | |
| Start 5: lfp_test | |
| Start 6: ring_TEST | |
| Start 19: reporting_1 | |
| 1/19 Test #6: ring_TEST .............................. Passed 10.78 sec | |
| Start 7: ring_binqueue_TEST | |
| 2/19 Test #4: queuing_test ........................... Passed 10.85 sec | |
| 3/19 Test #1: cmd_interface_test ..................... Passed 11.36 sec | |
| Start 8: ring_multisend_TEST | |
| 4/19 Test #3: alignment_test ......................... Passed 11.53 sec | |
| 5/19 Test #19: reporting_1 ............................ Passed 11.61 sec | |
| Start 9: ring_spike_buffer_TEST | |
| 6/19 Test #2: interleave_info_constructor_test ....... Passed 11.90 sec | |
| 7/19 Test #5: lfp_test ............................... Passed 12.28 sec | |
| Start 10: ring_permute1_TEST | |
| 8/19 Test #8: ring_multisend_TEST .................... Passed 11.62 sec | |
| Start 11: ring_permute2_TEST | |
| 9/19 Test #9: ring_spike_buffer_TEST ................. Passed 28.59 sec | |
| Start 12: ring_gap_TEST | |
| 10/19 Test #10: ring_permute1_TEST ..................... Passed 28.71 sec | |
| Start 13: ring_gap_binqueue_TEST | |
| 11/19 Test #7: ring_binqueue_TEST ..................... Passed 30.42 sec | |
| Start 14: ring_gap_multisend_TEST | |
| 12/19 Test #11: ring_permute2_TEST ..................... Passed 23.95 sec | |
| Start 15: ring_gap_permute1_TEST | |
| 13/19 Test #13: ring_gap_binqueue_TEST ................. Passed 50.47 sec | |
| Start 16: ring_gap_permute2_TEST | |
| 14/19 Test #12: ring_gap_TEST .......................... Passed 54.65 sec | |
| Start 17: ring_permute2_cudaInterface_TEST | |
| 15/19 Test #15: ring_gap_permute1_TEST ................. Passed 56.55 sec | |
| Start 18: ring_gap_permute2_cudaInterface_TEST | |
| 16/19 Test #14: ring_gap_multisend_TEST ................ Passed 62.32 sec | |
| 17/19 Test #16: ring_gap_permute2_TEST ................. Passed 28.07 sec | |
| 18/19 Test #17: ring_permute2_cudaInterface_TEST ....... Passed 24.92 sec | |
| 19/19 Test #18: ring_gap_permute2_cudaInterface_TEST ... Passed 18.92 sec | |
| 100% tests passed, 0 tests failed out of 19 | |
| Total Test time (real) = 122.42 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1649844200:step_script [0Ksection_start:1649844200:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=32432 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=211033 responseStatus[0;m=201 Created token[0;m=wxprY66y | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=32462 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=211033 responseStatus[0;m=201 Created token[0;m=wxprY66y | |
| section_end:1649844201:upload_artifacts_on_success [0Ksection_start:1649844201:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1649844202:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1649844034:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1649844034:resolve_secrets [0Ksection_start:1649844034:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor487356905, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 48472, build ref 9a466a6e2a1c807e4d6045f3fc0b1fbaf51370b6, job ID 211032 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag | |
| A slurm job will be created with name GL_J211032_PROD_P112_CP9_C10 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| Submitted batch job 379285 | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M --job-name=GL_J211032_PROD_P112_CP9_C10 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --ntasks=8 --jobid=379285 --cpus-per-task=1 --mem=30750M | |
| section_end:1649844037:prepare_executor [0Ksection_start:1649844037:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on ldir01u09.bbp.epfl.ch via bbpv1.epfl.ch... | |
| section_end:1649844045:prepare_script [0Ksection_start:1649844045:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1649844047:get_sources [0Ksection_start:1649844047:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:nmodl:nvhpc:omp (211021)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=27942 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=211021 responseStatus[0;m=200 OK token[0;m=Koj5cr-4 | |
| section_end:1649844048:download_artifacts [0Ksection_start:1649844048:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i4n0 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20220413-1001 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211021/spack-build/spack-stage-coreneuron-develop-dqfui2d7qu3mc6w6xhrktts7kg2pjeio/spack-build-dqfui2d | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| Start 3: alignment_test | |
| Start 4: queuing_test | |
| Start 5: lfp_test | |
| Start 6: ring_TEST | |
| Start 19: reporting_1 | |
| 1/19 Test #1: cmd_interface_test ..................... Passed 11.03 sec | |
| 2/19 Test #3: alignment_test ......................... Passed 11.04 sec | |
| Start 7: ring_binqueue_TEST | |
| 3/19 Test #4: queuing_test ........................... Passed 11.48 sec | |
| 4/19 Test #2: interleave_info_constructor_test ....... Passed 11.80 sec | |
| Start 8: ring_multisend_TEST | |
| 5/19 Test #5: lfp_test ............................... Passed 12.26 sec | |
| 6/19 Test #6: ring_TEST .............................. Passed 13.11 sec | |
| Start 9: ring_spike_buffer_TEST | |
| 7/19 Test #19: reporting_1 ............................ Passed 13.41 sec | |
| Start 10: ring_permute1_TEST | |
| 8/19 Test #9: ring_spike_buffer_TEST ................. Passed 41.12 sec | |
| Start 11: ring_permute2_TEST | |
| 9/19 Test #8: ring_multisend_TEST .................... Passed 42.49 sec | |
| Start 12: ring_gap_TEST | |
| 10/19 Test #10: ring_permute1_TEST ..................... Passed 40.92 sec | |
| Start 13: ring_gap_binqueue_TEST | |
| 11/19 Test #7: ring_binqueue_TEST ..................... Passed 43.30 sec | |
| Start 14: ring_gap_multisend_TEST | |
| 12/19 Test #11: ring_permute2_TEST ..................... Passed 42.17 sec | |
| Start 15: ring_gap_permute1_TEST | |
| 13/19 Test #14: ring_gap_multisend_TEST ................ Passed 151.75 sec | |
| Start 16: ring_gap_permute2_TEST | |
| 14/19 Test #13: ring_gap_binqueue_TEST ................. Passed 161.85 sec | |
| Start 17: ring_permute2_cudaInterface_TEST | |
| 15/19 Test #12: ring_gap_TEST .......................... Passed 162.25 sec | |
| Start 18: ring_gap_permute2_cudaInterface_TEST | |
| 16/19 Test #15: ring_gap_permute1_TEST ................. Passed 123.52 sec | |
| 17/19 Test #16: ring_gap_permute2_TEST ................. Passed 14.88 sec | |
| 18/19 Test #17: ring_permute2_cudaInterface_TEST ....... Passed 8.42 sec | |
| 19/19 Test #18: ring_gap_permute2_cudaInterface_TEST ... Passed 10.86 sec | |
| 100% tests passed, 0 tests failed out of 19 | |
| Total Test time (real) = 227.44 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1649844305:step_script [0Ksection_start:1649844305:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=33364 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=211032 responseStatus[0;m=201 Created token[0;m=suhroZAj | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=33395 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=211032 responseStatus[0;m=201 Created token[0;m=suhroZAj | |
| section_end:1649844306:upload_artifacts_on_success [0Ksection_start:1649844306:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1649844306:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1649844161:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1649844161:resolve_secrets [0Ksection_start:1649844161:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor323865865, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 48472, build ref 9a466a6e2a1c807e4d6045f3fc0b1fbaf51370b6, job ID 211039 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag | |
| A slurm job will be created with name GL_J211039_PROD_P112_CP5_C11 | |
| Job parameters: memory=76G, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=16 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 379294 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=16 --cpus-per-task=1 --mem=76G --job-name=GL_J211039_PROD_P112_CP5_C11 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --ntasks=16 --jobid=379294 --cpus-per-task=1 --mem=76G | |
| section_end:1649844163:prepare_executor [0Ksection_start:1649844163:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i7n21 via bbpv1.epfl.ch... | |
| section_end:1649844166:prepare_script [0Ksection_start:1649844166:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1649844168:get_sources [0Ksection_start:1649844168:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:neuron:mod2c:intel (211028)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=32894 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=211028 responseStatus[0;m=200 OK token[0;m=Y6xPs83u | |
| section_end:1649844169:download_artifacts [0Ksection_start:1649844169:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i7n21 | |
| Build name: Linux-icpc | |
| Create new tag: 20220413-1003 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211028/spack-build/spack-stage-neuron-develop-47kwkdqbfahzhd6mgo3d7lvidjenlcwo/spack-build-47kwkdq | |
| Start 48: external_ringtest::coreneuron_cpu_mpi_offline::preparation | |
| Start 55: testcorenrn_bbcore::coreneuron_cpu_offline::preparation | |
| Start 61: testcorenrn_conc::coreneuron_cpu_offline::preparation | |
| Start 67: testcorenrn_deriv::coreneuron_cpu_offline::preparation | |
| Start 73: testcorenrn_gf::coreneuron_cpu_offline::preparation | |
| Start 79: testcorenrn_kin::coreneuron_cpu_offline::preparation | |
| Start 84: testcorenrn_patstim::coreneuron_cpu_offline::preparation | |
| Start 90: testcorenrn_vecplay::coreneuron_cpu_offline::preparation | |
| Start 96: testcorenrn_vecevent::coreneuron_cpu_offline::preparation | |
| 1/120 Test #55: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............ Passed 4.12 sec | |
| Start 43: external_ringtest::neuron | |
| 2/120 Test #79: testcorenrn_kin::coreneuron_cpu_offline::preparation ............... Passed 4.26 sec | |
| Start 51: testcorenrn_bbcore::neuron | |
| 3/120 Test #61: testcorenrn_conc::coreneuron_cpu_offline::preparation .............. Passed 6.43 sec | |
| Start 52: testcorenrn_bbcore::coreneuron_cpu_online | |
| 4/120 Test #67: testcorenrn_deriv::coreneuron_cpu_offline::preparation ............. Passed 9.14 sec | |
| Start 53: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate | |
| 5/120 Test #90: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ........... Passed 11.78 sec | |
| Start 102: testcorenrn_watch::coreneuron_cpu_offline::preparation | |
| 6/120 Test #73: testcorenrn_gf::coreneuron_cpu_offline::preparation ................ Passed 14.94 sec | |
| Start 44: external_ringtest::neuron_mpi | |
| 7/120 Test #84: testcorenrn_patstim::coreneuron_cpu_offline::preparation ........... Passed 15.54 sec | |
| Start 45: external_ringtest::coreneuron_cpu_mpi_offline_saverestore | |
| 8/120 Test #51: testcorenrn_bbcore::neuron ......................................... Passed 11.21 sec | |
| Start 54: testcorenrn_bbcore::coreneuron_cpu_offline | |
| 9/120 Test #96: testcorenrn_vecevent::coreneuron_cpu_offline::preparation .......... Passed 16.00 sec | |
| Start 117: olfactory-bulb-3d::neuron::preparation | |
| 10/120 Test #117: olfactory-bulb-3d::neuron::preparation ............................. Passed 1.07 sec | |
| Start 119: olfactory-bulb-3d::coreneuron_cpu_online::preparation | |
| 11/120 Test #119: olfactory-bulb-3d::coreneuron_cpu_online::preparation .............. Passed 0.11 sec | |
| Start 40: reduced_dentate::neuron | |
| 12/120 Test #43: external_ringtest::neuron .......................................... Passed 13.05 sec | |
| Start 57: testcorenrn_conc::neuron | |
| 13/120 Test #53: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ......... Passed 8.92 sec | |
| Start 58: testcorenrn_conc::coreneuron_cpu_online | |
| 14/120 Test #52: testcorenrn_bbcore::coreneuron_cpu_online .......................... Passed 13.34 sec | |
| Start 59: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate | |
| 15/120 Test #54: testcorenrn_bbcore::coreneuron_cpu_offline ......................... Passed 4.35 sec | |
| Start 60: testcorenrn_conc::coreneuron_cpu_offline | |
| 16/120 Test #48: external_ringtest::coreneuron_cpu_mpi_offline::preparation ......... Passed 20.35 sec | |
| Start 46: external_ringtest::coreneuron_cpu_mpi | |
| 17/120 Test #102: testcorenrn_watch::coreneuron_cpu_offline::preparation ............. Passed 8.69 sec | |
| Start 47: external_ringtest::coreneuron_cpu_mpi_offline | |
| 18/120 Test #57: testcorenrn_conc::neuron ........................................... Passed 5.06 sec | |
| Start 63: testcorenrn_deriv::neuron | |
| 19/120 Test #60: testcorenrn_conc::coreneuron_cpu_offline ........................... Passed 5.51 sec | |
| Start 64: testcorenrn_deriv::coreneuron_cpu_online | |
| 20/120 Test #47: external_ringtest::coreneuron_cpu_mpi_offline ...................... Passed 9.24 sec | |
| Start 65: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate | |
| Start 66: testcorenrn_deriv::coreneuron_cpu_offline | |
| 21/120 Test #44: external_ringtest::neuron_mpi ...................................... Passed 15.92 sec | |
| Start 69: testcorenrn_gf::neuron | |
| 22/120 Test #58: testcorenrn_conc::coreneuron_cpu_online ............................ Passed 15.10 sec | |
| Start 75: testcorenrn_kin::neuron | |
| 23/120 Test #66: testcorenrn_deriv::coreneuron_cpu_offline .......................... Passed 5.31 sec | |
| Start 76: testcorenrn_kin::coreneuron_cpu_online | |
| 24/120 Test #63: testcorenrn_deriv::neuron .......................................... Passed 13.88 sec | |
| Start 77: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate | |
| 25/120 Test #59: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ........... Passed 18.79 sec | |
| Start 78: testcorenrn_kin::coreneuron_cpu_offline | |
| 26/120 Test #40: reduced_dentate::neuron ............................................ Passed 22.30 sec | |
| Start 41: reduced_dentate::coreneuron_cpu | |
| 27/120 Test #69: testcorenrn_gf::neuron ............................................. Passed 9.33 sec | |
| Start 70: testcorenrn_gf::coreneuron_cpu_online | |
| 28/120 Test #78: testcorenrn_kin::coreneuron_cpu_offline ............................ Passed 3.87 sec | |
| Start 108: channel_benchmark_hippo::neuron | |
| 29/120 Test #64: testcorenrn_deriv::coreneuron_cpu_online ........................... Passed 17.06 sec | |
| Start 109: channel_benchmark_hippo::coreneuron_cpu_online | |
| 30/120 Test #75: testcorenrn_kin::neuron ............................................ Passed 9.39 sec | |
| Start 110: channel_benchmark_hippo::coreneuron_cpu_filemode | |
| 31/120 Test #46: external_ringtest::coreneuron_cpu_mpi .............................. Passed 22.50 sec | |
| Start 71: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate | |
| 32/120 Test #65: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate .......... Passed 13.38 sec | |
| Start 112: channel_benchmark_sscx::neuron | |
| 33/120 Test #76: testcorenrn_kin::coreneuron_cpu_online ............................. Passed 7.96 sec | |
| Start 113: channel_benchmark_sscx::coreneuron_cpu_online | |
| 34/120 Test #77: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ............ Passed 7.41 sec | |
| Start 114: channel_benchmark_sscx::coreneuron_cpu_filemode | |
| 35/120 Test #70: testcorenrn_gf::coreneuron_cpu_online .............................. Passed 17.01 sec | |
| Start 72: testcorenrn_gf::coreneuron_cpu_offline | |
| 36/120 Test #45: external_ringtest::coreneuron_cpu_mpi_offline_saverestore .......... Passed 46.66 sec | |
| Start 81: testcorenrn_patstim::neuron | |
| 37/120 Test #72: testcorenrn_gf::coreneuron_cpu_offline ............................. Passed 8.87 sec | |
| Start 82: testcorenrn_patstim::coreneuron_cpu_offline_saverestore | |
| 38/120 Test #81: testcorenrn_patstim::neuron ........................................ Passed 15.24 sec | |
| Start 83: testcorenrn_patstim::coreneuron_cpu_offline | |
| 39/120 Test #71: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ............. Passed 41.49 sec | |
| Start 86: testcorenrn_vecplay::neuron | |
| 40/120 Test #83: testcorenrn_patstim::coreneuron_cpu_offline ........................ Passed 7.70 sec | |
| Start 87: testcorenrn_vecplay::coreneuron_cpu_online | |
| 41/120 Test #82: testcorenrn_patstim::coreneuron_cpu_offline_saverestore ............ Passed 31.05 sec | |
| Start 88: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate | |
| 42/120 Test #86: testcorenrn_vecplay::neuron ........................................ Passed 18.84 sec | |
| Start 89: testcorenrn_vecplay::coreneuron_cpu_offline | |
| 43/120 Test #89: testcorenrn_vecplay::coreneuron_cpu_offline ........................ Passed 6.54 sec | |
| Start 98: testcorenrn_watch::neuron | |
| 44/120 Test #87: testcorenrn_vecplay::coreneuron_cpu_online ......................... Passed 32.55 sec | |
| Start 99: testcorenrn_watch::coreneuron_cpu_online | |
| 45/120 Test #98: testcorenrn_watch::neuron .......................................... Passed 17.17 sec | |
| Start 100: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate | |
| 46/120 Test #41: reduced_dentate::coreneuron_cpu .................................... Passed 92.84 sec | |
| Start 92: testcorenrn_vecevent::neuron | |
| 47/120 Test #88: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........ Passed 38.03 sec | |
| Start 101: testcorenrn_watch::coreneuron_cpu_offline | |
| 48/120 Test #101: testcorenrn_watch::coreneuron_cpu_offline .......................... Passed 10.48 sec | |
| Start 104: testcorenrn_netstimdirect::direct_netstimdirect | |
| 49/120 Test #92: testcorenrn_vecevent::neuron ....................................... Passed 23.01 sec | |
| Start 93: testcorenrn_vecevent::coreneuron_cpu_online | |
| 50/120 Test #99: testcorenrn_watch::coreneuron_cpu_online ........................... Passed 47.80 sec | |
| Start 105: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate | |
| 51/120 Test #100: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate .......... Passed 47.16 sec | |
| Start 1: testneuron | |
| Start 2: ringtest | |
| 52/120 Test #1: testneuron ......................................................... Passed 0.94 sec | |
| Start 3: connect_dend | |
| 53/120 Test #2: ringtest ........................................................... Passed 3.37 sec | |
| Start 4: mpi_init::nrniv_mpiopt | |
| 54/120 Test #3: connect_dend ....................................................... Passed 5.38 sec | |
| Start 5: mpi_init::nrniv_nrnmpi_init | |
| 55/120 Test #5: mpi_init::nrniv_nrnmpi_init ........................................ Passed 2.37 sec | |
| Start 6: mpi_init::python_nrnmpi_init | |
| 56/120 Test #4: mpi_init::nrniv_mpiopt ............................................. Passed 6.73 sec | |
| Start 7: mpi_init::python_mpienv | |
| 57/120 Test #104: testcorenrn_netstimdirect::direct_netstimdirect .................... Passed 38.96 sec | |
| Start 8: mpi_init::nrniv_mpiexec_mpiopt | |
| Start 9: mpi_init::nrniv_mpiexec_nrnmpi_init | |
| 58/120 Test #9: mpi_init::nrniv_mpiexec_nrnmpi_init ................................ Passed 7.64 sec | |
| Start 10: mpi_init::python_mpiexec_nrnmpi_init | |
| 59/120 Test #6: mpi_init::python_nrnmpi_init ....................................... Passed 9.77 sec | |
| Start 11: mpi_init::python_mpiexec_mpienv | |
| 60/120 Test #8: mpi_init::nrniv_mpiexec_mpiopt ..................................... Passed 10.24 sec | |
| Start 12: pynrn::basic_tests | |
| 61/120 Test #109: channel_benchmark_hippo::coreneuron_cpu_online ..................... Passed 154.63 sec | |
| Start 13: parallel_tests | |
| 62/120 Test #93: testcorenrn_vecevent::coreneuron_cpu_online ........................ Passed 46.66 sec | |
| Start 94: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate | |
| 63/120 Test #7: mpi_init::python_mpienv ............................................ Passed 23.04 sec | |
| Start 14: parallel_partrans | |
| 64/120 Test #114: channel_benchmark_sscx::coreneuron_cpu_filemode .................... Passed 164.08 sec | |
| Start 15: parallel_netpar | |
| 65/120 Test #113: channel_benchmark_sscx::coreneuron_cpu_online ...................... Passed 164.58 sec | |
| Start 16: parallel_bas | |
| 66/120 Test #112: channel_benchmark_sscx::neuron ..................................... Passed 164.96 sec | |
| Start 17: coreneuron_modtests::version_macros | |
| 67/120 Test #10: mpi_init::python_mpiexec_nrnmpi_init ............................... Passed 15.85 sec | |
| Start 18: coreneuron_modtests::fornetcon_py_cpu | |
| 68/120 Test #108: channel_benchmark_hippo::neuron .................................... Passed 165.95 sec | |
| Start 19: coreneuron_modtests::direct_py_cpu | |
| 69/120 Test #110: channel_benchmark_hippo::coreneuron_cpu_filemode ................... Passed 165.88 sec | |
| Start 20: coreneuron_modtests::direct_hoc_cpu | |
| 70/120 Test #105: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ... Passed 42.88 sec | |
| Start 21: coreneuron_modtests::spikes_py_cpu | |
| Start 22: coreneuron_modtests::spikes_file_mode_py_cpu | |
| 71/120 Test #11: mpi_init::python_mpiexec_mpienv .................................... Passed 16.73 sec | |
| Start 23: coreneuron_modtests::fast_imem_py_cpu | |
| 72/120 Test #13: parallel_tests ..................................................... Passed 26.77 sec | |
| Start 24: coreneuron_modtests::datareturn_py_cpu | |
| 73/120 Test #15: parallel_netpar .................................................... Passed 28.49 sec | |
| Start 25: coreneuron_modtests::test_units_py_cpu | |
| 74/120 Test #20: coreneuron_modtests::direct_hoc_cpu ................................ Passed 28.63 sec | |
| Start 26: coreneuron_modtests::test_netmove_py_cpu | |
| 75/120 Test #14: parallel_partrans .................................................. Passed 31.35 sec | |
| Start 27: coreneuron_modtests::test_pointer_py_cpu | |
| 76/120 Test #94: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ....... Passed 37.86 sec | |
| Start 95: testcorenrn_vecevent::coreneuron_cpu_offline | |
| 77/120 Test #17: coreneuron_modtests::version_macros ................................ Passed 37.87 sec | |
| Start 28: coreneuron_modtests::test_watchrange_py_cpu | |
| 78/120 Test #23: coreneuron_modtests::fast_imem_py_cpu .............................. Passed 37.54 sec | |
| Start 29: coreneuron_modtests::test_psolve_py_cpu | |
| 79/120 Test #22: coreneuron_modtests::spikes_file_mode_py_cpu ....................... Passed 38.13 sec | |
| Start 30: coreneuron_modtests::test_ba_py_cpu | |
| 80/120 Test #21: coreneuron_modtests::spikes_py_cpu ................................. Passed 38.29 sec | |
| Start 31: coreneuron_modtests::test_natrans_py_cpu | |
| 81/120 Test #19: coreneuron_modtests::direct_py_cpu ................................. Passed 38.88 sec | |
| Start 35: modlunit_unitstest | |
| 82/120 Test #18: coreneuron_modtests::fornetcon_py_cpu .............................. Passed 40.89 sec | |
| Start 36: modlunit_hh | |
| 83/120 Test #95: testcorenrn_vecevent::coreneuron_cpu_offline ....................... Passed 9.35 sec | |
| Start 116: olfactory-bulb-3d::neuron | |
| 84/120 Test #36: modlunit_hh ........................................................ Passed 0.51 sec | |
| Start 37: modlunit_stim | |
| 85/120 Test #35: modlunit_unitstest ................................................. Passed 2.46 sec | |
| Start 38: modlunit_pattern | |
| 86/120 Test #38: modlunit_pattern ................................................... Passed 0.18 sec | |
| Start 39: external_nrntest | |
| 87/120 Test #37: modlunit_stim ...................................................... Passed 0.38 sec | |
| Start 42: reduced_dentate::compare_results | |
| 88/120 Test #24: coreneuron_modtests::datareturn_py_cpu ............................. Passed 26.60 sec | |
| Start 56: testcorenrn_bbcore::compare_results | |
| 89/120 Test #42: reduced_dentate::compare_results ................................... Passed 1.49 sec | |
| Start 62: testcorenrn_conc::compare_results | |
| 90/120 Test #56: testcorenrn_bbcore::compare_results ................................ Passed 1.97 sec | |
| Start 68: testcorenrn_deriv::compare_results | |
| 91/120 Test #62: testcorenrn_conc::compare_results .................................. Passed 2.23 sec | |
| Start 74: testcorenrn_gf::compare_results | |
| 92/120 Test #68: testcorenrn_deriv::compare_results ................................. Passed 2.48 sec | |
| Start 80: testcorenrn_kin::compare_results | |
| 93/120 Test #25: coreneuron_modtests::test_units_py_cpu ............................. Passed 19.94 sec | |
| Start 85: testcorenrn_patstim::compare_results | |
| 94/120 Test #74: testcorenrn_gf::compare_results .................................... Passed 3.05 sec | |
| Start 91: testcorenrn_vecplay::compare_results | |
| 95/120 Test #80: testcorenrn_kin::compare_results ................................... Passed 2.86 sec | |
| Start 97: testcorenrn_vecevent::compare_results | |
| 96/120 Test #91: testcorenrn_vecplay::compare_results ............................... Passed 2.16 sec | |
| Start 103: testcorenrn_watch::compare_results | |
| 97/120 Test #97: testcorenrn_vecevent::compare_results .............................. Passed 2.34 sec | |
| Start 106: testcorenrn_netstimdirect::compare_results | |
| 98/120 Test #85: testcorenrn_patstim::compare_results ............................... Passed 4.38 sec | |
| Start 111: channel_benchmark_hippo::compare_results | |
| 99/120 Test #103: testcorenrn_watch::compare_results ................................. Passed 3.33 sec | |
| Start 115: channel_benchmark_sscx::compare_results | |
| 100/120 Test #111: channel_benchmark_hippo::compare_results ........................... Passed 2.12 sec | |
| 101/120 Test #106: testcorenrn_netstimdirect::compare_results ......................... Passed 3.21 sec | |
| Start 32: coreneuron_modtests::spikes_mpi_py_cpu | |
| 102/120 Test #26: coreneuron_modtests::test_netmove_py_cpu ........................... Passed 28.24 sec | |
| 103/120 Test #115: channel_benchmark_sscx::compare_results ............................ Passed 3.41 sec | |
| Start 33: coreneuron_modtests::spikes_mpi_file_mode_py_cpu | |
| 104/120 Test #16: parallel_bas ....................................................... Passed 69.96 sec | |
| 105/120 Test #30: coreneuron_modtests::test_ba_py_cpu ................................ Passed 32.84 sec | |
| Start 34: coreneuron_modtests::inputpresyn_py_cpu | |
| 106/120 Test #27: coreneuron_modtests::test_pointer_py_cpu ........................... Passed 45.88 sec | |
| 107/120 Test #33: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ................... Passed 18.64 sec | |
| 108/120 Test #29: coreneuron_modtests::test_psolve_py_cpu ............................ Passed 42.06 sec | |
| Start 118: olfactory-bulb-3d::coreneuron_cpu_online | |
| 109/120 Test #31: coreneuron_modtests::test_natrans_py_cpu ........................... Passed 42.76 sec | |
| 110/120 Test #28: coreneuron_modtests::test_watchrange_py_cpu ........................ Passed 45.80 sec | |
| 111/120 Test #32: coreneuron_modtests::spikes_mpi_py_cpu ............................. Passed 33.32 sec | |
| 112/120 Test #12: pynrn::basic_tests ................................................. Passed 109.26 sec | |
| 113/120 Test #34: coreneuron_modtests::inputpresyn_py_cpu ............................ Passed 35.98 sec | |
| Start 49: external_ringtest::coreneuron_cpu_mpi_threads | |
| 114/120 Test #49: external_ringtest::coreneuron_cpu_mpi_threads ...................... Passed 53.98 sec | |
| Start 50: external_ringtest::compare_results | |
| 115/120 Test #50: external_ringtest::compare_results ................................. Passed 0.71 sec | |
| 116/120 Test #116: olfactory-bulb-3d::neuron .......................................... Passed 140.53 sec | |
| 117/120 Test #118: olfactory-bulb-3d::coreneuron_cpu_online ........................... Passed 116.70 sec | |
| Start 120: olfactory-bulb-3d::compare_results | |
| 118/120 Test #120: olfactory-bulb-3d::compare_results ................................. Passed 0.73 sec | |
| 119/120 Test #39: external_nrntest ................................................... Passed 298.72 sec | |
| Start 107: tqperf::coreneuron | |
| 120/120 Test #107: tqperf::coreneuron ................................................. Passed 11.65 sec | |
| 100% tests passed, 0 tests failed out of 120 | |
| Total Test time (real) = 560.60 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1649844780:step_script [0Ksection_start:1649844780:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=52852 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=211039 responseStatus[0;m=201 Created token[0;m=8F8WMwP8 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=52902 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=211039 responseStatus[0;m=201 Created token[0;m=8F8WMwP8 | |
| section_end:1649844782:upload_artifacts_on_success [0Ksection_start:1649844782:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1649844783:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1649844815:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1649844815:resolve_secrets [0Ksection_start:1649844815:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor822041385, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 48472, build ref 9a466a6e2a1c807e4d6045f3fc0b1fbaf51370b6, job ID 211036 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag | |
| A slurm job will be created with name GL_J211036_PROD_P112_CP6_C5 | |
| Job parameters: memory=76G, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=16 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| Submitted batch job 379354 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=16 --cpus-per-task=1 --mem=76G --job-name=GL_J211036_PROD_P112_CP6_C5 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --ntasks=16 --jobid=379354 --cpus-per-task=1 --mem=76G | |
| section_end:1649844817:prepare_executor [0Ksection_start:1649844817:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on ldir01u09.bbp.epfl.ch via bbpv1.epfl.ch... | |
| section_end:1649844825:prepare_script [0Ksection_start:1649844825:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1649844826:get_sources [0Ksection_start:1649844826:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:neuron:mod2c:nvhpc:acc (211025)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=38548 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=211025 responseStatus[0;m=200 OK token[0;m=xznJFiB7 | |
| section_end:1649844827:download_artifacts [0Ksection_start:1649844827:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i7n21 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20220413-1014 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211025/spack-build/spack-stage-neuron-develop-sqrws2vsdssc3xwshyyrvkm5oyeurofv/spack-build-sqrws2v | |
| Start 66: external_ringtest::coreneuron_cpu_mpi_offline::preparation | |
| Start 71: external_ringtest::coreneuron_gpu_mpi_offline::preparation | |
| Start 78: testcorenrn_bbcore::coreneuron_gpu_offline::preparation | |
| Start 82: testcorenrn_bbcore::coreneuron_cpu_offline::preparation | |
| Start 88: testcorenrn_conc::coreneuron_gpu_offline::preparation | |
| Start 92: testcorenrn_conc::coreneuron_cpu_offline::preparation | |
| Start 98: testcorenrn_deriv::coreneuron_gpu_offline::preparation | |
| Start 102: testcorenrn_deriv::coreneuron_cpu_offline::preparation | |
| Start 108: testcorenrn_gf::coreneuron_gpu_offline::preparation | |
| Start 112: testcorenrn_gf::coreneuron_cpu_offline::preparation | |
| Start 118: testcorenrn_kin::coreneuron_gpu_offline::preparation | |
| Start 122: testcorenrn_kin::coreneuron_cpu_offline::preparation | |
| 1/184 Test #92: testcorenrn_conc::coreneuron_cpu_offline::preparation .............. Passed 3.80 sec | |
| Start 127: testcorenrn_patstim::coreneuron_gpu_offline::preparation | |
| 2/184 Test #82: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............ Passed 3.84 sec | |
| Start 61: external_ringtest::neuron | |
| 3/184 Test #88: testcorenrn_conc::coreneuron_gpu_offline::preparation .............. Passed 3.96 sec | |
| Start 74: testcorenrn_bbcore::neuron | |
| 4/184 Test #98: testcorenrn_deriv::coreneuron_gpu_offline::preparation ............. Passed 4.00 sec | |
| Start 75: testcorenrn_bbcore::coreneuron_gpu_online | |
| 5/184 Test #122: testcorenrn_kin::coreneuron_cpu_offline::preparation ............... Passed 4.03 sec | |
| Start 76: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate | |
| 6/184 Test #118: testcorenrn_kin::coreneuron_gpu_offline::preparation ............... Passed 4.05 sec | |
| Start 79: testcorenrn_bbcore::coreneuron_cpu_online | |
| 7/184 Test #78: testcorenrn_bbcore::coreneuron_gpu_offline::preparation ............ Passed 4.09 sec | |
| Start 77: testcorenrn_bbcore::coreneuron_gpu_offline | |
| 8/184 Test #112: testcorenrn_gf::coreneuron_cpu_offline::preparation ................ Passed 4.17 sec | |
| Start 130: testcorenrn_patstim::coreneuron_cpu_offline::preparation | |
| 9/184 Test #102: testcorenrn_deriv::coreneuron_cpu_offline::preparation ............. Passed 5.89 sec | |
| Start 80: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate | |
| 10/184 Test #61: external_ringtest::neuron .......................................... Passed 2.65 sec | |
| Start 81: testcorenrn_bbcore::coreneuron_cpu_offline | |
| 11/184 Test #108: testcorenrn_gf::coreneuron_gpu_offline::preparation ................ Passed 6.52 sec | |
| Start 136: testcorenrn_vecplay::coreneuron_gpu_offline::preparation | |
| 12/184 Test #127: testcorenrn_patstim::coreneuron_gpu_offline::preparation ........... Passed 3.00 sec | |
| Start 84: testcorenrn_conc::neuron | |
| 13/184 Test #74: testcorenrn_bbcore::neuron ......................................... Passed 3.28 sec | |
| Start 85: testcorenrn_conc::coreneuron_gpu_online | |
| 14/184 Test #130: testcorenrn_patstim::coreneuron_cpu_offline::preparation ........... Passed 3.52 sec | |
| Start 140: testcorenrn_vecplay::coreneuron_cpu_offline::preparation | |
| 15/184 Test #84: testcorenrn_conc::neuron ........................................... Passed 2.11 sec | |
| Start 86: testcorenrn_conc::coreneuron_gpu_online_psolve_alternate | |
| 16/184 Test #136: testcorenrn_vecplay::coreneuron_gpu_offline::preparation ........... Passed 2.51 sec | |
| Start 156: testcorenrn_watch::coreneuron_gpu_offline::preparation | |
| 17/184 Test #140: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ........... Passed 1.76 sec | |
| Start 160: testcorenrn_watch::coreneuron_cpu_offline::preparation | |
| 18/184 Test #71: external_ringtest::coreneuron_gpu_mpi_offline::preparation ......... Passed 9.75 sec | |
| Start 62: external_ringtest::neuron_mpi | |
| 19/184 Test #156: testcorenrn_watch::coreneuron_gpu_offline::preparation ............. Passed 3.41 sec | |
| Start 63: external_ringtest::coreneuron_cpu_mpi_offline_saverestore | |
| 20/184 Test #160: testcorenrn_watch::coreneuron_cpu_offline::preparation ............. Passed 3.79 sec | |
| Start 64: external_ringtest::coreneuron_cpu_mpi | |
| 21/184 Test #81: testcorenrn_bbcore::coreneuron_cpu_offline ......................... Passed 9.59 sec | |
| Start 87: testcorenrn_conc::coreneuron_gpu_offline | |
| 22/184 Test #79: testcorenrn_bbcore::coreneuron_cpu_online .......................... Passed 13.01 sec | |
| Start 89: testcorenrn_conc::coreneuron_cpu_online | |
| 23/184 Test #80: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ......... Passed 14.89 sec | |
| Start 90: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate | |
| 24/184 Test #62: external_ringtest::neuron_mpi ...................................... Passed 11.41 sec | |
| Start 68: external_ringtest::coreneuron_gpu_mpi_offline_saverestore | |
| 25/184 Test #66: external_ringtest::coreneuron_cpu_mpi_offline::preparation ......... Passed 21.24 sec | |
| Start 65: external_ringtest::coreneuron_cpu_mpi_offline | |
| 26/184 Test #77: testcorenrn_bbcore::coreneuron_gpu_offline ......................... Passed 17.21 sec | |
| Start 91: testcorenrn_conc::coreneuron_cpu_offline | |
| 27/184 Test #75: testcorenrn_bbcore::coreneuron_gpu_online .......................... Passed 17.52 sec | |
| Start 94: testcorenrn_deriv::neuron | |
| 28/184 Test #85: testcorenrn_conc::coreneuron_gpu_online ............................ Passed 14.35 sec | |
| Start 95: testcorenrn_deriv::coreneuron_gpu_online | |
| 29/184 Test #76: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate ......... Passed 17.68 sec | |
| Start 96: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate | |
| 30/184 Test #86: testcorenrn_conc::coreneuron_gpu_online_psolve_alternate ........... Passed 14.11 sec | |
| Start 97: testcorenrn_deriv::coreneuron_gpu_offline | |
| 31/184 Test #94: testcorenrn_deriv::neuron .......................................... Passed 2.04 sec | |
| Start 99: testcorenrn_deriv::coreneuron_cpu_online | |
| 32/184 Test #87: testcorenrn_conc::coreneuron_gpu_offline ........................... Passed 14.78 sec | |
| Start 100: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate | |
| 33/184 Test #89: testcorenrn_conc::coreneuron_cpu_online ............................ Passed 16.79 sec | |
| Start 101: testcorenrn_deriv::coreneuron_cpu_offline | |
| 34/184 Test #64: external_ringtest::coreneuron_cpu_mpi .............................. Passed 20.94 sec | |
| Start 69: external_ringtest::coreneuron_gpu_mpi | |
| 35/184 Test #91: testcorenrn_conc::coreneuron_cpu_offline ........................... Passed 16.91 sec | |
| Start 114: testcorenrn_kin::neuron | |
| 36/184 Test #90: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ........... Passed 18.71 sec | |
| Start 115: testcorenrn_kin::coreneuron_gpu_online | |
| 37/184 Test #114: testcorenrn_kin::neuron ............................................ Passed 1.96 sec | |
| Start 116: testcorenrn_kin::coreneuron_gpu_online_psolve_alternate | |
| 38/184 Test #65: external_ringtest::coreneuron_cpu_mpi_offline ...................... Passed 23.27 sec | |
| Start 70: external_ringtest::coreneuron_gpu_mpi_offline | |
| 39/184 Test #99: testcorenrn_deriv::coreneuron_cpu_online ........................... Passed 21.00 sec | |
| Start 117: testcorenrn_kin::coreneuron_gpu_offline | |
| 40/184 Test #95: testcorenrn_deriv::coreneuron_gpu_online ........................... Passed 23.22 sec | |
| Start 119: testcorenrn_kin::coreneuron_cpu_online | |
| 41/184 Test #97: testcorenrn_deriv::coreneuron_gpu_offline .......................... Passed 21.98 sec | |
| Start 120: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate | |
| 42/184 Test #100: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate .......... Passed 15.41 sec | |
| Start 121: testcorenrn_kin::coreneuron_cpu_offline | |
| 43/184 Test #96: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate .......... Passed 24.61 sec | |
| Start 125: testcorenrn_patstim::coreneuron_gpu_offline_saverestore | |
| 44/184 Test #101: testcorenrn_deriv::coreneuron_cpu_offline .......................... Passed 16.70 sec | |
| Start 126: testcorenrn_patstim::coreneuron_gpu_offline | |
| 45/184 Test #69: external_ringtest::coreneuron_gpu_mpi .............................. Passed 18.23 sec | |
| Start 104: testcorenrn_gf::neuron | |
| 46/184 Test #104: testcorenrn_gf::neuron ............................................. Passed 2.31 sec | |
| Start 105: testcorenrn_gf::coreneuron_gpu_online | |
| 47/184 Test #115: testcorenrn_kin::coreneuron_gpu_online ............................. Passed 15.39 sec | |
| Start 166: channel_benchmark_hippo::neuron | |
| 48/184 Test #117: testcorenrn_kin::coreneuron_gpu_offline ............................ Passed 18.16 sec | |
| Start 167: channel_benchmark_hippo::coreneuron_gpu_online | |
| 49/184 Test #116: testcorenrn_kin::coreneuron_gpu_online_psolve_alternate ............ Passed 23.76 sec | |
| Start 168: channel_benchmark_hippo::coreneuron_gpu_filemode | |
| 50/184 Test #121: testcorenrn_kin::coreneuron_cpu_offline ............................ Passed 19.06 sec | |
| Start 169: channel_benchmark_hippo::coreneuron_cpu_online | |
| 51/184 Test #119: testcorenrn_kin::coreneuron_cpu_online ............................. Passed 20.59 sec | |
| Start 170: channel_benchmark_hippo::coreneuron_cpu_filemode | |
| 52/184 Test #120: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ............ Passed 21.92 sec | |
| Start 172: channel_benchmark_sscx::neuron | |
| 53/184 Test #70: external_ringtest::coreneuron_gpu_mpi_offline ...................... Passed 22.62 sec | |
| Start 106: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate | |
| 54/184 Test #126: testcorenrn_patstim::coreneuron_gpu_offline ........................ Passed 32.90 sec | |
| Start 173: channel_benchmark_sscx::coreneuron_gpu_online | |
| 55/184 Test #105: testcorenrn_gf::coreneuron_gpu_online .............................. Passed 55.16 sec | |
| Start 107: testcorenrn_gf::coreneuron_gpu_offline | |
| 56/184 Test #125: testcorenrn_patstim::coreneuron_gpu_offline_saverestore ............ Passed 66.15 sec | |
| Start 174: channel_benchmark_sscx::coreneuron_gpu_filemode | |
| 57/184 Test #63: external_ringtest::coreneuron_cpu_mpi_offline_saverestore .......... Passed 113.19 sec | |
| Start 109: testcorenrn_gf::coreneuron_cpu_online | |
| 58/184 Test #68: external_ringtest::coreneuron_gpu_mpi_offline_saverestore .......... Passed 110.36 sec | |
| Start 110: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate | |
| 59/184 Test #109: testcorenrn_gf::coreneuron_cpu_online .............................. Passed 38.86 sec | |
| Start 111: testcorenrn_gf::coreneuron_cpu_offline | |
| 60/184 Test #107: testcorenrn_gf::coreneuron_gpu_offline ............................. Passed 55.36 sec | |
| Start 124: testcorenrn_patstim::neuron | |
| 61/184 Test #124: testcorenrn_patstim::neuron ........................................ Passed 5.11 sec | |
| Start 128: testcorenrn_patstim::coreneuron_cpu_offline_saverestore | |
| 62/184 Test #106: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate ............. Passed 115.78 sec | |
| Start 129: testcorenrn_patstim::coreneuron_cpu_offline | |
| 63/184 Test #110: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ............. Passed 59.92 sec | |
| Start 132: testcorenrn_vecplay::neuron | |
| 64/184 Test #132: testcorenrn_vecplay::neuron ........................................ Passed 4.11 sec | |
| Start 133: testcorenrn_vecplay::coreneuron_gpu_online | |
| 65/184 Test #111: testcorenrn_gf::coreneuron_cpu_offline ............................. Passed 47.38 sec | |
| Start 134: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate | |
| 66/184 Test #166: channel_benchmark_hippo::neuron .................................... Passed 166.80 sec | |
| Start 175: channel_benchmark_sscx::coreneuron_cpu_online | |
| 67/184 Test #129: testcorenrn_patstim::coreneuron_cpu_offline ........................ Passed 46.56 sec | |
| Start 135: testcorenrn_vecplay::coreneuron_gpu_offline | |
| 68/184 Test #172: channel_benchmark_sscx::neuron ..................................... Passed 166.39 sec | |
| Start 176: channel_benchmark_sscx::coreneuron_cpu_filemode | |
| 69/184 Test #133: testcorenrn_vecplay::coreneuron_gpu_online ......................... Passed 51.81 sec | |
| Start 137: testcorenrn_vecplay::coreneuron_cpu_online | |
| 70/184 Test #168: channel_benchmark_hippo::coreneuron_gpu_filemode ................... Passed 213.54 sec | |
| Start 1: testneuron | |
| 71/184 Test #1: testneuron ......................................................... Passed 0.05 sec | |
| Start 2: ringtest | |
| 72/184 Test #167: channel_benchmark_hippo::coreneuron_gpu_online ..................... Passed 214.91 sec | |
| Start 3: connect_dend | |
| 73/184 Test #3: connect_dend ....................................................... Passed 0.26 sec | |
| Start 4: mpi_init::nrniv_mpiopt | |
| 74/184 Test #2: ringtest ........................................................... Passed 0.47 sec | |
| Start 5: mpi_init::nrniv_nrnmpi_init | |
| 75/184 Test #5: mpi_init::nrniv_nrnmpi_init ........................................ Passed 0.24 sec | |
| Start 6: mpi_init::python_nrnmpi_init | |
| 76/184 Test #4: mpi_init::nrniv_mpiopt ............................................. Passed 0.97 sec | |
| Start 7: mpi_init::python_mpienv | |
| 77/184 Test #6: mpi_init::python_nrnmpi_init ....................................... Passed 1.16 sec | |
| Start 8: mpi_init::nrniv_mpiexec_mpiopt | |
| 78/184 Test #173: channel_benchmark_sscx::coreneuron_gpu_online ...................... Passed 196.29 sec | |
| Start 9: mpi_init::nrniv_mpiexec_nrnmpi_init | |
| 79/184 Test #8: mpi_init::nrniv_mpiexec_mpiopt ..................................... Passed 1.60 sec | |
| Start 10: mpi_init::python_mpiexec_nrnmpi_init | |
| 80/184 Test #9: mpi_init::nrniv_mpiexec_nrnmpi_init ................................ Passed 1.38 sec | |
| Start 11: mpi_init::python_mpiexec_mpienv | |
| 81/184 Test #128: testcorenrn_patstim::coreneuron_cpu_offline_saverestore ............ Passed 110.95 sec | |
| Start 138: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate | |
| 82/184 Test #7: mpi_init::python_mpienv ............................................ Passed 3.76 sec | |
| Start 12: pynrn::basic_tests | |
| 83/184 Test #10: mpi_init::python_mpiexec_nrnmpi_init ............................... Passed 2.11 sec | |
| Start 13: parallel_tests | |
| 84/184 Test #137: testcorenrn_vecplay::coreneuron_cpu_online ......................... Passed 37.94 sec | |
| Start 139: testcorenrn_vecplay::coreneuron_cpu_offline | |
| 85/184 Test #174: channel_benchmark_sscx::coreneuron_gpu_filemode .................... Passed 173.38 sec | |
| Start 14: parallel_partrans | |
| 86/184 Test #11: mpi_init::python_mpiexec_mpienv .................................... Passed 5.86 sec | |
| Start 15: parallel_netpar | |
| 87/184 Test #169: channel_benchmark_hippo::coreneuron_cpu_online ..................... Passed 222.10 sec | |
| Start 16: parallel_bas | |
| 88/184 Test #170: channel_benchmark_hippo::coreneuron_cpu_filemode ................... Passed 222.41 sec | |
| Start 17: coreneuron_modtests::version_macros | |
| 89/184 Test #135: testcorenrn_vecplay::coreneuron_gpu_offline ........................ Passed 62.17 sec | |
| Start 152: testcorenrn_watch::neuron | |
| 90/184 Test #175: channel_benchmark_sscx::coreneuron_cpu_online ...................... Passed 72.09 sec | |
| Start 18: coreneuron_modtests::fornetcon_py_cpu | |
| 91/184 Test #152: testcorenrn_watch::neuron .......................................... Passed 2.99 sec | |
| Start 153: testcorenrn_watch::coreneuron_gpu_online | |
| 92/184 Test #15: parallel_netpar .................................................... Passed 8.15 sec | |
| Start 19: coreneuron_modtests::direct_py_cpu | |
| 93/184 Test #14: parallel_partrans .................................................. Passed 10.07 sec | |
| Start 20: coreneuron_modtests::direct_hoc_cpu | |
| 94/184 Test #13: parallel_tests ..................................................... Passed 14.25 sec | |
| Start 21: coreneuron_modtests::spikes_py_cpu | |
| 95/184 Test #139: testcorenrn_vecplay::coreneuron_cpu_offline ........................ Passed 14.57 sec | |
| Start 154: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate | |
| 96/184 Test #16: parallel_bas ....................................................... Passed 12.72 sec | |
| Start 22: coreneuron_modtests::spikes_file_mode_py_cpu | |
| 97/184 Test #12: pynrn::basic_tests ................................................. Passed 18.79 sec | |
| Start 23: coreneuron_modtests::fast_imem_py_cpu | |
| 98/184 Test #23: coreneuron_modtests::fast_imem_py_cpu .............................. Passed 0.88 sec | |
| Start 24: coreneuron_modtests::datareturn_py_cpu | |
| 99/184 Test #134: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate ........ Passed 95.56 sec | |
| Start 155: testcorenrn_watch::coreneuron_gpu_offline | |
| 100/184 Test #17: coreneuron_modtests::version_macros ................................ Passed 25.51 sec | |
| Start 25: coreneuron_modtests::test_units_py_cpu | |
| 101/184 Test #138: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........ Passed 33.19 sec | |
| Start 157: testcorenrn_watch::coreneuron_cpu_online | |
| 102/184 Test #19: coreneuron_modtests::direct_py_cpu ................................. Passed 27.65 sec | |
| Start 26: coreneuron_modtests::test_netmove_py_cpu | |
| 103/184 Test #21: coreneuron_modtests::spikes_py_cpu ................................. Passed 28.19 sec | |
| Start 27: coreneuron_modtests::test_pointer_py_cpu | |
| 104/184 Test #176: channel_benchmark_sscx::coreneuron_cpu_filemode .................... Passed 93.14 sec | |
| Start 28: coreneuron_modtests::test_watchrange_py_cpu | |
| 105/184 Test #18: coreneuron_modtests::fornetcon_py_cpu .............................. Passed 33.32 sec | |
| Start 29: coreneuron_modtests::test_psolve_py_cpu | |
| 106/184 Test #22: coreneuron_modtests::spikes_file_mode_py_cpu ....................... Passed 26.82 sec | |
| Start 30: coreneuron_modtests::test_ba_py_cpu | |
| 107/184 Test #153: testcorenrn_watch::coreneuron_gpu_online ........................... Passed 33.00 sec | |
| Start 158: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate | |
| 108/184 Test #24: coreneuron_modtests::datareturn_py_cpu ............................. Passed 25.51 sec | |
| Start 31: coreneuron_modtests::test_natrans_py_cpu | |
| 109/184 Test #20: coreneuron_modtests::direct_hoc_cpu ................................ Passed 34.20 sec | |
| Start 35: coreneuron_modtests::fornetcon_py_gpu | |
| 110/184 Test #154: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate .......... Passed 39.67 sec | |
| Start 159: testcorenrn_watch::coreneuron_cpu_offline | |
| 111/184 Test #155: testcorenrn_watch::coreneuron_gpu_offline .......................... Passed 32.13 sec | |
| Start 162: testcorenrn_netstimdirect::direct_netstimdirect | |
| 112/184 Test #25: coreneuron_modtests::test_units_py_cpu ............................. Passed 30.12 sec | |
| Start 36: coreneuron_modtests::direct_py_gpu | |
| 113/184 Test #30: coreneuron_modtests::test_ba_py_cpu ................................ Passed 22.41 sec | |
| Start 37: coreneuron_modtests::direct_hoc_gpu | |
| 114/184 Test #28: coreneuron_modtests::test_watchrange_py_cpu ........................ Passed 23.18 sec | |
| Start 38: coreneuron_modtests::spikes_py_gpu | |
| 115/184 Test #29: coreneuron_modtests::test_psolve_py_cpu ............................ Passed 22.58 sec | |
| Start 39: coreneuron_modtests::spikes_file_mode_py_gpu | |
| 116/184 Test #26: coreneuron_modtests::test_netmove_py_cpu ........................... Passed 26.92 sec | |
| Start 40: coreneuron_modtests::fast_imem_py_gpu | |
| 117/184 Test #40: coreneuron_modtests::fast_imem_py_gpu .............................. Passed 1.27 sec | |
| Start 41: coreneuron_modtests::datareturn_py_gpu | |
| 118/184 Test #31: coreneuron_modtests::test_natrans_py_cpu ........................... Passed 25.13 sec | |
| Start 42: coreneuron_modtests::test_units_py_gpu | |
| 119/184 Test #35: coreneuron_modtests::fornetcon_py_gpu .............................. Passed 23.66 sec | |
| Start 43: coreneuron_modtests::test_netmove_py_gpu | |
| 120/184 Test #158: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate .......... Passed 26.48 sec | |
| Start 163: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate | |
| 121/184 Test #157: testcorenrn_watch::coreneuron_cpu_online ........................... Passed 51.13 sec | |
| Start 32: coreneuron_modtests::spikes_mpi_py_cpu | |
| 122/184 Test #162: testcorenrn_netstimdirect::direct_netstimdirect .................... Passed 29.96 sec | |
| Start 33: coreneuron_modtests::spikes_mpi_file_mode_py_cpu | |
| 123/184 Test #159: testcorenrn_watch::coreneuron_cpu_offline .......................... Passed 31.38 sec | |
| Start 34: coreneuron_modtests::inputpresyn_py_cpu | |
| 124/184 Test #36: coreneuron_modtests::direct_py_gpu ................................. Passed 31.23 sec | |
| Start 44: coreneuron_modtests::test_pointer_py_gpu | |
| 125/184 Test #37: coreneuron_modtests::direct_hoc_gpu ................................ Passed 27.21 sec | |
| Start 45: coreneuron_modtests::test_watchrange_py_gpu | |
| 126/184 Test #39: coreneuron_modtests::spikes_file_mode_py_gpu ....................... Passed 27.27 sec | |
| Start 46: coreneuron_modtests::test_psolve_py_gpu | |
| 127/184 Test #38: coreneuron_modtests::spikes_py_gpu ................................. Passed 27.34 sec | |
| Start 47: coreneuron_modtests::test_ba_py_gpu | |
| 128/184 Test #41: coreneuron_modtests::datareturn_py_gpu ............................. Passed 30.61 sec | |
| Start 48: coreneuron_modtests::test_natrans_py_gpu | |
| 129/184 Test #42: coreneuron_modtests::test_units_py_gpu ............................. Passed 31.46 sec | |
| Start 52: modlunit_unitstest | |
| 130/184 Test #52: modlunit_unitstest ................................................. Passed 0.02 sec | |
| Start 53: modlunit_hh | |
| 131/184 Test #53: modlunit_hh ........................................................ Passed 0.01 sec | |
| Start 54: modlunit_stim | |
| 132/184 Test #54: modlunit_stim ...................................................... Passed 0.01 sec | |
| Start 55: modlunit_pattern | |
| 133/184 Test #55: modlunit_pattern ................................................... Passed 0.01 sec | |
| Start 56: external_nrntest | |
| 134/184 Test #163: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ... Passed 32.92 sec | |
| Start 49: coreneuron_modtests::spikes_mpi_py_gpu | |
| 135/184 Test #43: coreneuron_modtests::test_netmove_py_gpu ........................... Passed 34.07 sec | |
| Start 83: testcorenrn_bbcore::compare_results | |
| 136/184 Test #83: testcorenrn_bbcore::compare_results ................................ Passed 0.06 sec | |
| Start 93: testcorenrn_conc::compare_results | |
| 137/184 Test #93: testcorenrn_conc::compare_results .................................. Passed 0.05 sec | |
| Start 103: testcorenrn_deriv::compare_results | |
| 138/184 Test #103: testcorenrn_deriv::compare_results ................................. Passed 0.05 sec | |
| Start 113: testcorenrn_gf::compare_results | |
| 139/184 Test #113: testcorenrn_gf::compare_results .................................... Passed 0.07 sec | |
| Start 123: testcorenrn_kin::compare_results | |
| 140/184 Test #123: testcorenrn_kin::compare_results ................................... Passed 0.07 sec | |
| Start 131: testcorenrn_patstim::compare_results | |
| 141/184 Test #131: testcorenrn_patstim::compare_results ............................... Passed 0.06 sec | |
| Start 141: testcorenrn_vecplay::compare_results | |
| 142/184 Test #141: testcorenrn_vecplay::compare_results ............................... Passed 0.06 sec | |
| Start 161: testcorenrn_watch::compare_results | |
| 143/184 Test #161: testcorenrn_watch::compare_results ................................. Passed 0.06 sec | |
| Start 164: testcorenrn_netstimdirect::compare_results | |
| 144/184 Test #164: testcorenrn_netstimdirect::compare_results ......................... Passed 0.06 sec | |
| Start 171: channel_benchmark_hippo::compare_results | |
| 145/184 Test #171: channel_benchmark_hippo::compare_results ........................... Passed 0.06 sec | |
| Start 177: channel_benchmark_sscx::compare_results | |
| 146/184 Test #177: channel_benchmark_sscx::compare_results ............................ Passed 0.05 sec | |
| 147/184 Test #32: coreneuron_modtests::spikes_mpi_py_cpu ............................. Passed 25.68 sec | |
| Start 50: coreneuron_modtests::spikes_mpi_file_mode_py_gpu | |
| 148/184 Test #33: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ................... Passed 24.20 sec | |
| Start 51: coreneuron_modtests::inputpresyn_py_gpu | |
| 149/184 Test #34: coreneuron_modtests::inputpresyn_py_cpu ............................ Passed 23.06 sec | |
| 150/184 Test #47: coreneuron_modtests::test_ba_py_gpu ................................ Passed 24.50 sec | |
| Start 146: testcorenrn_vecevent::coreneuron_gpu_offline::preparation | |
| 151/184 Test #48: coreneuron_modtests::test_natrans_py_gpu ........................... Passed 19.88 sec | |
| 152/184 Test #45: coreneuron_modtests::test_watchrange_py_gpu ........................ Passed 24.81 sec | |
| 153/184 Test #46: coreneuron_modtests::test_psolve_py_gpu ............................ Passed 24.76 sec | |
| 154/184 Test #146: testcorenrn_vecevent::coreneuron_gpu_offline::preparation .......... Passed 2.26 sec | |
| Start 150: testcorenrn_vecevent::coreneuron_cpu_offline::preparation | |
| 155/184 Test #150: testcorenrn_vecevent::coreneuron_cpu_offline::preparation .......... Passed 3.30 sec | |
| Start 179: olfactory-bulb-3d::neuron::preparation | |
| 156/184 Test #179: olfactory-bulb-3d::neuron::preparation ............................. Passed 0.02 sec | |
| Start 181: olfactory-bulb-3d::coreneuron_gpu_online::preparation | |
| 157/184 Test #181: olfactory-bulb-3d::coreneuron_gpu_online::preparation .............. Passed 0.02 sec | |
| Start 183: olfactory-bulb-3d::coreneuron_cpu_online::preparation | |
| 158/184 Test #183: olfactory-bulb-3d::coreneuron_cpu_online::preparation .............. Passed 0.01 sec | |
| Start 57: reduced_dentate::neuron | |
| 159/184 Test #49: coreneuron_modtests::spikes_mpi_py_gpu ............................. Passed 20.35 sec | |
| Start 58: reduced_dentate::coreneuron_cpu | |
| 160/184 Test #50: coreneuron_modtests::spikes_mpi_file_mode_py_gpu ................... Passed 16.75 sec | |
| 161/184 Test #51: coreneuron_modtests::inputpresyn_py_gpu ............................ Passed 14.54 sec | |
| Start 59: reduced_dentate::coreneuron_gpu | |
| 162/184 Test #27: coreneuron_modtests::test_pointer_py_cpu ........................... Passed 90.45 sec | |
| 163/184 Test #57: reduced_dentate::neuron ............................................ Passed 26.42 sec | |
| Start 67: external_ringtest::coreneuron_cpu_mpi_threads | |
| 164/184 Test #44: coreneuron_modtests::test_pointer_py_gpu ........................... Passed 81.90 sec | |
| 165/184 Test #67: external_ringtest::coreneuron_cpu_mpi_threads ...................... Passed 31.67 sec | |
| Start 72: external_ringtest::coreneuron_gpu_mpi_threads | |
| 166/184 Test #58: reduced_dentate::coreneuron_cpu .................................... Passed 71.36 sec | |
| Start 142: testcorenrn_vecevent::neuron | |
| 167/184 Test #59: reduced_dentate::coreneuron_gpu .................................... Passed 70.60 sec | |
| Start 143: testcorenrn_vecevent::coreneuron_gpu_online | |
| Start 60: reduced_dentate::compare_results | |
| 168/184 Test #60: reduced_dentate::compare_results ................................... Passed 0.06 sec | |
| 169/184 Test #142: testcorenrn_vecevent::neuron ....................................... Passed 2.59 sec | |
| Start 144: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate | |
| 170/184 Test #143: testcorenrn_vecevent::coreneuron_gpu_online ........................ Passed 9.15 sec | |
| Start 145: testcorenrn_vecevent::coreneuron_gpu_offline | |
| 171/184 Test #72: external_ringtest::coreneuron_gpu_mpi_threads ...................... Passed 23.45 sec | |
| Start 147: testcorenrn_vecevent::coreneuron_cpu_online | |
| Start 73: external_ringtest::compare_results | |
| 172/184 Test #73: external_ringtest::compare_results ................................. Passed 0.07 sec | |
| 173/184 Test #144: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate ....... Passed 14.26 sec | |
| Start 148: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate | |
| 174/184 Test #145: testcorenrn_vecevent::coreneuron_gpu_offline ....................... Passed 12.21 sec | |
| Start 149: testcorenrn_vecevent::coreneuron_cpu_offline | |
| 175/184 Test #147: testcorenrn_vecevent::coreneuron_cpu_online ........................ Passed 11.99 sec | |
| Start 178: olfactory-bulb-3d::neuron | |
| 176/184 Test #148: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ....... Passed 6.99 sec | |
| Start 180: olfactory-bulb-3d::coreneuron_gpu_online | |
| 177/184 Test #56: external_nrntest ................................................... Passed 119.50 sec | |
| Start 182: olfactory-bulb-3d::coreneuron_cpu_online | |
| 178/184 Test #149: testcorenrn_vecevent::coreneuron_cpu_offline ....................... Passed 8.95 sec | |
| Start 151: testcorenrn_vecevent::compare_results | |
| 179/184 Test #151: testcorenrn_vecevent::compare_results .............................. Passed 0.05 sec | |
| 180/184 Test #178: olfactory-bulb-3d::neuron .......................................... Passed 143.36 sec | |
| 181/184 Test #180: olfactory-bulb-3d::coreneuron_gpu_online ........................... Passed 154.67 sec | |
| 182/184 Test #182: olfactory-bulb-3d::coreneuron_cpu_online ........................... Passed 162.44 sec | |
| Start 165: tqperf::coreneuron | |
| 183/184 Test #165: tqperf::coreneuron ................................................. Passed 53.49 sec | |
| Start 184: olfactory-bulb-3d::compare_results | |
| 184/184 Test #184: olfactory-bulb-3d::compare_results ................................. Passed 0.23 sec | |
| 100% tests passed, 0 tests failed out of 184 | |
| Total Test time (real) = 720.50 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1649845572:step_script [0Ksection_start:1649845572:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=60249 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=211036 responseStatus[0;m=201 Created token[0;m=tMX5EYMs | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=60313 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=211036 responseStatus[0;m=201 Created token[0;m=tMX5EYMs | |
| section_end:1649845574:upload_artifacts_on_success [0Ksection_start:1649845574:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1649845575:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1649845347:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1649845347:resolve_secrets [0Ksection_start:1649845347:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor779252517, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 48472, build ref 9a466a6e2a1c807e4d6045f3fc0b1fbaf51370b6, job ID 211040 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag | |
| A slurm job will be created with name GL_J211040_PROD_P112_CP2_C7 | |
| Job parameters: memory=76G, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=16 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 379434 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=16 --cpus-per-task=1 --mem=76G --job-name=GL_J211040_PROD_P112_CP2_C7 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --ntasks=16 --jobid=379434 --cpus-per-task=1 --mem=76G | |
| section_end:1649845348:prepare_executor [0Ksection_start:1649845348:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i7n21 via bbpv1.epfl.ch... | |
| section_end:1649845351:prepare_script [0Ksection_start:1649845351:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1649845353:get_sources [0Ksection_start:1649845353:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:neuron:nmodl:intel (211029)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=60749 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=211029 responseStatus[0;m=200 OK token[0;m=zngzupmC | |
| section_end:1649845354:download_artifacts [0Ksection_start:1649845354:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i4n0 | |
| Build name: Linux-icpc | |
| Create new tag: 20220413-1023 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211029/spack-build/spack-stage-neuron-develop-4ljxz6sigfw2sqg4xtopvwa3qqcjfsk4/spack-build-4ljxz6s | |
| Start 48: external_ringtest::coreneuron_cpu_mpi_offline::preparation | |
| Start 55: testcorenrn_bbcore::coreneuron_cpu_offline::preparation | |
| Start 61: testcorenrn_conc::coreneuron_cpu_offline::preparation | |
| Start 67: testcorenrn_deriv::coreneuron_cpu_offline::preparation | |
| Start 73: testcorenrn_gf::coreneuron_cpu_offline::preparation | |
| Start 79: testcorenrn_kin::coreneuron_cpu_offline::preparation | |
| Start 84: testcorenrn_patstim::coreneuron_cpu_offline::preparation | |
| Start 90: testcorenrn_vecplay::coreneuron_cpu_offline::preparation | |
| Start 96: testcorenrn_vecevent::coreneuron_cpu_offline::preparation | |
| 1/119 Test #61: testcorenrn_conc::coreneuron_cpu_offline::preparation .............. Passed 8.57 sec | |
| Start 43: external_ringtest::neuron | |
| 2/119 Test #73: testcorenrn_gf::coreneuron_cpu_offline::preparation ................ Passed 9.28 sec | |
| Start 102: testcorenrn_watch::coreneuron_cpu_offline::preparation | |
| 3/119 Test #84: testcorenrn_patstim::coreneuron_cpu_offline::preparation ........... Passed 10.56 sec | |
| Start 44: external_ringtest::neuron_mpi | |
| 4/119 Test #55: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............ Passed 10.76 sec | |
| Start 51: testcorenrn_bbcore::neuron | |
| 5/119 Test #90: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ........... Passed 11.28 sec | |
| Start 45: external_ringtest::coreneuron_cpu_mpi_offline_saverestore | |
| 6/119 Test #79: testcorenrn_kin::coreneuron_cpu_offline::preparation ............... Passed 11.38 sec | |
| Start 52: testcorenrn_bbcore::coreneuron_cpu_online | |
| 7/119 Test #96: testcorenrn_vecevent::coreneuron_cpu_offline::preparation .......... Passed 11.74 sec | |
| Start 116: olfactory-bulb-3d::neuron::preparation | |
| 8/119 Test #116: olfactory-bulb-3d::neuron::preparation ............................. Passed 0.02 sec | |
| Start 118: olfactory-bulb-3d::coreneuron_cpu_online::preparation | |
| 9/119 Test #118: olfactory-bulb-3d::coreneuron_cpu_online::preparation .............. Passed 0.20 sec | |
| Start 40: reduced_dentate::neuron | |
| 10/119 Test #67: testcorenrn_deriv::coreneuron_cpu_offline::preparation ............. Passed 12.98 sec | |
| Start 53: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate | |
| 11/119 Test #51: testcorenrn_bbcore::neuron ......................................... Passed 6.77 sec | |
| Start 54: testcorenrn_bbcore::coreneuron_cpu_offline | |
| 12/119 Test #102: testcorenrn_watch::coreneuron_cpu_offline::preparation ............. Passed 8.56 sec | |
| Start 46: external_ringtest::coreneuron_cpu_mpi | |
| 13/119 Test #43: external_ringtest::neuron .......................................... Passed 12.69 sec | |
| Start 57: testcorenrn_conc::neuron | |
| 14/119 Test #48: external_ringtest::coreneuron_cpu_mpi_offline::preparation ......... Passed 21.65 sec | |
| Start 47: external_ringtest::coreneuron_cpu_mpi_offline | |
| 15/119 Test #54: testcorenrn_bbcore::coreneuron_cpu_offline ......................... Passed 5.09 sec | |
| Start 58: testcorenrn_conc::coreneuron_cpu_online | |
| 16/119 Test #44: external_ringtest::neuron_mpi ...................................... Passed 15.71 sec | |
| Start 59: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate | |
| Start 60: testcorenrn_conc::coreneuron_cpu_offline | |
| 17/119 Test #60: testcorenrn_conc::coreneuron_cpu_offline ........................... Passed 5.56 sec | |
| Start 63: testcorenrn_deriv::neuron | |
| 18/119 Test #47: external_ringtest::coreneuron_cpu_mpi_offline ...................... Passed 10.90 sec | |
| Start 64: testcorenrn_deriv::coreneuron_cpu_online | |
| Start 65: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate | |
| 19/119 Test #52: testcorenrn_bbcore::coreneuron_cpu_online .......................... Passed 24.96 sec | |
| Start 66: testcorenrn_deriv::coreneuron_cpu_offline | |
| 20/119 Test #57: testcorenrn_conc::neuron ........................................... Passed 16.65 sec | |
| Start 75: testcorenrn_kin::neuron | |
| 21/119 Test #40: reduced_dentate::neuron ............................................ Passed 29.67 sec | |
| Start 41: reduced_dentate::coreneuron_cpu | |
| 22/119 Test #63: testcorenrn_deriv::neuron .......................................... Passed 9.80 sec | |
| Start 76: testcorenrn_kin::coreneuron_cpu_online | |
| 23/119 Test #66: testcorenrn_deriv::coreneuron_cpu_offline .......................... Passed 5.33 sec | |
| Start 77: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate | |
| 24/119 Test #53: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ......... Passed 30.70 sec | |
| Start 78: testcorenrn_kin::coreneuron_cpu_offline | |
| 25/119 Test #46: external_ringtest::coreneuron_cpu_mpi .............................. Passed 26.37 sec | |
| Start 69: testcorenrn_gf::neuron | |
| 26/119 Test #59: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ........... Passed 17.86 sec | |
| Start 107: channel_benchmark_hippo::neuron | |
| 27/119 Test #75: testcorenrn_kin::neuron ............................................ Passed 8.93 sec | |
| Start 108: channel_benchmark_hippo::coreneuron_cpu_online | |
| 28/119 Test #65: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate .......... Passed 14.29 sec | |
| Start 109: channel_benchmark_hippo::coreneuron_cpu_filemode | |
| 29/119 Test #58: testcorenrn_conc::coreneuron_cpu_online ............................ Passed 25.98 sec | |
| Start 111: channel_benchmark_sscx::neuron | |
| 30/119 Test #64: testcorenrn_deriv::coreneuron_cpu_online ........................... Passed 15.75 sec | |
| Start 112: channel_benchmark_sscx::coreneuron_cpu_online | |
| 31/119 Test #78: testcorenrn_kin::coreneuron_cpu_offline ............................ Passed 6.20 sec | |
| Start 113: channel_benchmark_sscx::coreneuron_cpu_filemode | |
| 32/119 Test #45: external_ringtest::coreneuron_cpu_mpi_offline_saverestore .......... Passed 46.02 sec | |
| Start 70: testcorenrn_gf::coreneuron_cpu_online | |
| 33/119 Test #76: testcorenrn_kin::coreneuron_cpu_online ............................. Passed 17.88 sec | |
| Start 1: testneuron | |
| 34/119 Test #1: testneuron ......................................................... Passed 0.17 sec | |
| Start 2: ringtest | |
| 35/119 Test #2: ringtest ........................................................... Passed 0.69 sec | |
| Start 3: connect_dend | |
| 36/119 Test #3: connect_dend ....................................................... Passed 0.18 sec | |
| Start 4: mpi_init::nrniv_mpiopt | |
| 37/119 Test #4: mpi_init::nrniv_mpiopt ............................................. Passed 0.70 sec | |
| Start 5: mpi_init::nrniv_nrnmpi_init | |
| 38/119 Test #77: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ............ Passed 19.07 sec | |
| Start 6: mpi_init::python_nrnmpi_init | |
| 39/119 Test #6: mpi_init::python_nrnmpi_init ....................................... Passed 1.44 sec | |
| Start 7: mpi_init::python_mpienv | |
| 40/119 Test #5: mpi_init::nrniv_nrnmpi_init ........................................ Passed 2.06 sec | |
| Start 8: mpi_init::nrniv_mpiexec_mpiopt | |
| 41/119 Test #69: testcorenrn_gf::neuron ............................................. Passed 20.46 sec | |
| Start 71: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate | |
| 42/119 Test #8: mpi_init::nrniv_mpiexec_mpiopt ..................................... Passed 2.45 sec | |
| Start 9: mpi_init::nrniv_mpiexec_nrnmpi_init | |
| 43/119 Test #70: testcorenrn_gf::coreneuron_cpu_online .............................. Passed 17.88 sec | |
| Start 72: testcorenrn_gf::coreneuron_cpu_offline | |
| 44/119 Test #7: mpi_init::python_mpienv ............................................ Passed 16.60 sec | |
| Start 10: mpi_init::python_mpiexec_nrnmpi_init | |
| 45/119 Test #9: mpi_init::nrniv_mpiexec_nrnmpi_init ................................ Passed 15.60 sec | |
| Start 11: mpi_init::python_mpiexec_mpienv | |
| 46/119 Test #72: testcorenrn_gf::coreneuron_cpu_offline ............................. Passed 15.57 sec | |
| Start 81: testcorenrn_patstim::neuron | |
| 47/119 Test #10: mpi_init::python_mpiexec_nrnmpi_init ............................... Passed 26.13 sec | |
| Start 12: pynrn::basic_tests | |
| 48/119 Test #81: testcorenrn_patstim::neuron ........................................ Passed 26.13 sec | |
| Start 82: testcorenrn_patstim::coreneuron_cpu_offline_saverestore | |
| 49/119 Test #71: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ............. Passed 52.73 sec | |
| Start 83: testcorenrn_patstim::coreneuron_cpu_offline | |
| 50/119 Test #11: mpi_init::python_mpiexec_mpienv .................................... Passed 47.09 sec | |
| Start 13: parallel_tests | |
| 51/119 Test #83: testcorenrn_patstim::coreneuron_cpu_offline ........................ Passed 11.67 sec | |
| Start 86: testcorenrn_vecplay::neuron | |
| 52/119 Test #107: channel_benchmark_hippo::neuron .................................... Passed 90.40 sec | |
| Start 14: parallel_partrans | |
| 53/119 Test #86: testcorenrn_vecplay::neuron ........................................ Passed 25.38 sec | |
| Start 87: testcorenrn_vecplay::coreneuron_cpu_online | |
| 54/119 Test #82: testcorenrn_patstim::coreneuron_cpu_offline_saverestore ............ Passed 47.11 sec | |
| Start 88: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate | |
| 55/119 Test #14: parallel_partrans .................................................. Passed 30.61 sec | |
| Start 15: parallel_netpar | |
| 56/119 Test #13: parallel_tests ..................................................... Passed 39.23 sec | |
| Start 16: parallel_bas | |
| 57/119 Test #12: pynrn::basic_tests ................................................. Passed 63.09 sec | |
| Start 17: coreneuron_modtests::version_macros | |
| 58/119 Test #87: testcorenrn_vecplay::coreneuron_cpu_online ......................... Passed 15.68 sec | |
| Start 89: testcorenrn_vecplay::coreneuron_cpu_offline | |
| 59/119 Test #15: parallel_netpar .................................................... Passed 10.04 sec | |
| Start 18: coreneuron_modtests::fornetcon_py_cpu | |
| 60/119 Test #89: testcorenrn_vecplay::coreneuron_cpu_offline ........................ Passed 6.97 sec | |
| Start 98: testcorenrn_watch::neuron | |
| 61/119 Test #98: testcorenrn_watch::neuron .......................................... Passed 5.27 sec | |
| Start 99: testcorenrn_watch::coreneuron_cpu_online | |
| 62/119 Test #88: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........ Passed 18.31 sec | |
| Start 100: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate | |
| 63/119 Test #17: coreneuron_modtests::version_macros ................................ Passed 18.53 sec | |
| Start 19: coreneuron_modtests::direct_py_cpu | |
| 64/119 Test #99: testcorenrn_watch::coreneuron_cpu_online ........................... Passed 9.70 sec | |
| Start 101: testcorenrn_watch::coreneuron_cpu_offline | |
| 65/119 Test #101: testcorenrn_watch::coreneuron_cpu_offline .......................... Passed 5.36 sec | |
| Start 104: testcorenrn_netstimdirect::direct_netstimdirect | |
| 66/119 Test #100: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate .......... Passed 17.02 sec | |
| Start 105: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate | |
| 67/119 Test #19: coreneuron_modtests::direct_py_cpu ................................. Passed 15.21 sec | |
| Start 20: coreneuron_modtests::direct_hoc_cpu | |
| 68/119 Test #16: parallel_bas ....................................................... Passed 37.76 sec | |
| Start 21: coreneuron_modtests::spikes_py_cpu | |
| 69/119 Test #20: coreneuron_modtests::direct_hoc_cpu ................................ Passed 3.74 sec | |
| Start 22: coreneuron_modtests::spikes_file_mode_py_cpu | |
| 70/119 Test #104: testcorenrn_netstimdirect::direct_netstimdirect .................... Passed 9.09 sec | |
| Start 23: coreneuron_modtests::fast_imem_py_cpu | |
| Start 24: coreneuron_modtests::datareturn_py_cpu | |
| 71/119 Test #105: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ... Passed 11.40 sec | |
| Start 25: coreneuron_modtests::test_units_py_cpu | |
| Start 26: coreneuron_modtests::test_netmove_py_cpu | |
| 72/119 Test #112: channel_benchmark_sscx::coreneuron_cpu_online ...................... Passed 171.52 sec | |
| Start 27: coreneuron_modtests::test_pointer_py_cpu | |
| 73/119 Test #109: channel_benchmark_hippo::coreneuron_cpu_filemode ................... Passed 181.20 sec | |
| Start 28: coreneuron_modtests::test_watchrange_py_cpu | |
| 74/119 Test #113: channel_benchmark_sscx::coreneuron_cpu_filemode .................... Passed 178.78 sec | |
| Start 29: coreneuron_modtests::test_psolve_py_cpu | |
| 75/119 Test #108: channel_benchmark_hippo::coreneuron_cpu_online ..................... Passed 184.90 sec | |
| Start 30: coreneuron_modtests::test_ba_py_cpu | |
| 76/119 Test #111: channel_benchmark_sscx::neuron ..................................... Passed 184.04 sec | |
| Start 31: coreneuron_modtests::test_natrans_py_cpu | |
| 77/119 Test #21: coreneuron_modtests::spikes_py_cpu ................................. Passed 38.77 sec | |
| Start 35: modlunit_unitstest | |
| 78/119 Test #22: coreneuron_modtests::spikes_file_mode_py_cpu ....................... Passed 38.19 sec | |
| Start 36: modlunit_hh | |
| 79/119 Test #35: modlunit_unitstest ................................................. Passed 0.02 sec | |
| Start 37: modlunit_stim | |
| 80/119 Test #36: modlunit_hh ........................................................ Passed 0.02 sec | |
| Start 38: modlunit_pattern | |
| 81/119 Test #37: modlunit_stim ...................................................... Passed 0.01 sec | |
| Start 39: external_nrntest | |
| 82/119 Test #38: modlunit_pattern ................................................... Passed 0.01 sec | |
| Start 56: testcorenrn_bbcore::compare_results | |
| 83/119 Test #41: reduced_dentate::coreneuron_cpu .................................... Passed 203.01 sec | |
| Start 92: testcorenrn_vecevent::neuron | |
| 84/119 Test #56: testcorenrn_bbcore::compare_results ................................ Passed 0.31 sec | |
| Start 42: reduced_dentate::compare_results | |
| 85/119 Test #42: reduced_dentate::compare_results ................................... Passed 0.14 sec | |
| Start 62: testcorenrn_conc::compare_results | |
| 86/119 Test #23: coreneuron_modtests::fast_imem_py_cpu .............................. Passed 38.43 sec | |
| Start 68: testcorenrn_deriv::compare_results | |
| 87/119 Test #62: testcorenrn_conc::compare_results .................................. Passed 0.65 sec | |
| Start 74: testcorenrn_gf::compare_results | |
| 88/119 Test #25: coreneuron_modtests::test_units_py_cpu ............................. Passed 34.81 sec | |
| Start 80: testcorenrn_kin::compare_results | |
| 89/119 Test #68: testcorenrn_deriv::compare_results ................................. Passed 0.83 sec | |
| Start 85: testcorenrn_patstim::compare_results | |
| 90/119 Test #74: testcorenrn_gf::compare_results .................................... Passed 0.83 sec | |
| Start 91: testcorenrn_vecplay::compare_results | |
| 91/119 Test #80: testcorenrn_kin::compare_results ................................... Passed 0.88 sec | |
| Start 103: testcorenrn_watch::compare_results | |
| 92/119 Test #24: coreneuron_modtests::datareturn_py_cpu ............................. Passed 40.71 sec | |
| Start 106: testcorenrn_netstimdirect::compare_results | |
| 93/119 Test #26: coreneuron_modtests::test_netmove_py_cpu ........................... Passed 36.41 sec | |
| Start 110: channel_benchmark_hippo::compare_results | |
| 94/119 Test #85: testcorenrn_patstim::compare_results ............................... Passed 2.09 sec | |
| Start 114: channel_benchmark_sscx::compare_results | |
| 95/119 Test #28: coreneuron_modtests::test_watchrange_py_cpu ........................ Passed 19.49 sec | |
| 96/119 Test #91: testcorenrn_vecplay::compare_results ............................... Passed 1.89 sec | |
| Start 32: coreneuron_modtests::spikes_mpi_py_cpu | |
| 97/119 Test #110: channel_benchmark_hippo::compare_results ........................... Passed 1.22 sec | |
| 98/119 Test #29: coreneuron_modtests::test_psolve_py_cpu ............................ Passed 20.12 sec | |
| Start 33: coreneuron_modtests::spikes_mpi_file_mode_py_cpu | |
| 99/119 Test #103: testcorenrn_watch::compare_results ................................. Passed 2.22 sec | |
| 100/119 Test #30: coreneuron_modtests::test_ba_py_cpu ................................ Passed 17.10 sec | |
| Start 34: coreneuron_modtests::inputpresyn_py_cpu | |
| 101/119 Test #31: coreneuron_modtests::test_natrans_py_cpu ........................... Passed 17.09 sec | |
| 102/119 Test #114: channel_benchmark_sscx::compare_results ............................ Passed 1.78 sec | |
| 103/119 Test #106: testcorenrn_netstimdirect::compare_results ......................... Passed 2.51 sec | |
| 104/119 Test #92: testcorenrn_vecevent::neuron ....................................... Passed 7.11 sec | |
| Start 49: external_ringtest::coreneuron_cpu_mpi_threads | |
| 105/119 Test #27: coreneuron_modtests::test_pointer_py_cpu ........................... Passed 33.65 sec | |
| 106/119 Test #34: coreneuron_modtests::inputpresyn_py_cpu ............................ Passed 5.89 sec | |
| Start 93: testcorenrn_vecevent::coreneuron_cpu_online | |
| 107/119 Test #33: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ................... Passed 6.05 sec | |
| 108/119 Test #32: coreneuron_modtests::spikes_mpi_py_cpu ............................. Passed 6.84 sec | |
| Start 94: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate | |
| 109/119 Test #18: coreneuron_modtests::fornetcon_py_cpu .............................. Passed 81.00 sec | |
| 110/119 Test #49: external_ringtest::coreneuron_cpu_mpi_threads ...................... Passed 5.14 sec | |
| Start 95: testcorenrn_vecevent::coreneuron_cpu_offline | |
| Start 50: external_ringtest::compare_results | |
| 111/119 Test #50: external_ringtest::compare_results ................................. Passed 1.26 sec | |
| 112/119 Test #95: testcorenrn_vecevent::coreneuron_cpu_offline ....................... Passed 7.59 sec | |
| Start 115: olfactory-bulb-3d::neuron | |
| 113/119 Test #93: testcorenrn_vecevent::coreneuron_cpu_online ........................ Passed 18.74 sec | |
| Start 117: olfactory-bulb-3d::coreneuron_cpu_online | |
| 114/119 Test #94: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ....... Passed 19.54 sec | |
| Start 97: testcorenrn_vecevent::compare_results | |
| 115/119 Test #97: testcorenrn_vecevent::compare_results .............................. Passed 0.40 sec | |
| 116/119 Test #115: olfactory-bulb-3d::neuron .......................................... Passed 186.90 sec | |
| 117/119 Test #117: olfactory-bulb-3d::coreneuron_cpu_online ........................... Passed 187.84 sec | |
| Start 119: olfactory-bulb-3d::compare_results | |
| 118/119 Test #119: olfactory-bulb-3d::compare_results ................................. Passed 0.20 sec | |
| 119/119 Test #39: external_nrntest ................................................... Passed 265.20 sec | |
| 100% tests passed, 0 tests failed out of 119 | |
| Total Test time (real) = 509.98 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1649845905:step_script [0Ksection_start:1649845905:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=74299 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=211040 responseStatus[0;m=201 Created token[0;m=3WX5bxxu | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=74353 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=211040 responseStatus[0;m=201 Created token[0;m=3WX5bxxu | |
| section_end:1649845906:upload_artifacts_on_success [0Ksection_start:1649845906:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1649845907:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1649845872:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1649845872:resolve_secrets [0Ksection_start:1649845872:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor406661503, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 48472, build ref 9a466a6e2a1c807e4d6045f3fc0b1fbaf51370b6, job ID 211038 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag | |
| A slurm job will be created with name GL_J211038_PROD_P112_CP3_C2 | |
| Job parameters: memory=76G, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=16 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| Submitted batch job 379531 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=16 --cpus-per-task=1 --mem=76G --job-name=GL_J211038_PROD_P112_CP3_C2 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --ntasks=16 --jobid=379531 --cpus-per-task=1 --mem=76G | |
| section_end:1649845873:prepare_executor [0Ksection_start:1649845873:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on ldir01u09.bbp.epfl.ch via bbpv1.epfl.ch... | |
| section_end:1649845881:prepare_script [0Ksection_start:1649845881:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1649845883:get_sources [0Ksection_start:1649845883:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:neuron:nmodl:nvhpc:acc (211027)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=68007 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=211027 responseStatus[0;m=200 OK token[0;m=sQF2SFDP | |
| section_end:1649845884:download_artifacts [0Ksection_start:1649845884:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i4n0 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20220413-1032 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211027/spack-build/spack-stage-neuron-develop-aw3evwlkdey4vmmjzpsuscd3bnfgndfy/spack-build-aw3evwl | |
| Start 66: external_ringtest::coreneuron_cpu_mpi_offline::preparation | |
| Start 71: external_ringtest::coreneuron_gpu_mpi_offline::preparation | |
| Start 78: testcorenrn_bbcore::coreneuron_gpu_offline::preparation | |
| Start 82: testcorenrn_bbcore::coreneuron_cpu_offline::preparation | |
| Start 88: testcorenrn_conc::coreneuron_gpu_offline::preparation | |
| Start 92: testcorenrn_conc::coreneuron_cpu_offline::preparation | |
| Start 98: testcorenrn_deriv::coreneuron_gpu_offline::preparation | |
| Start 102: testcorenrn_deriv::coreneuron_cpu_offline::preparation | |
| Start 108: testcorenrn_gf::coreneuron_gpu_offline::preparation | |
| Start 112: testcorenrn_gf::coreneuron_cpu_offline::preparation | |
| Start 118: testcorenrn_kin::coreneuron_gpu_offline::preparation | |
| Start 122: testcorenrn_kin::coreneuron_cpu_offline::preparation | |
| 1/183 Test #78: testcorenrn_bbcore::coreneuron_gpu_offline::preparation ............ Passed 3.17 sec | |
| Start 127: testcorenrn_patstim::coreneuron_gpu_offline::preparation | |
| 2/183 Test #92: testcorenrn_conc::coreneuron_cpu_offline::preparation .............. Passed 3.19 sec | |
| Start 61: external_ringtest::neuron | |
| 3/183 Test #88: testcorenrn_conc::coreneuron_gpu_offline::preparation .............. Passed 3.22 sec | |
| Start 74: testcorenrn_bbcore::neuron | |
| 4/183 Test #118: testcorenrn_kin::coreneuron_gpu_offline::preparation ............... Passed 3.31 sec | |
| Start 75: testcorenrn_bbcore::coreneuron_gpu_online | |
| 5/183 Test #82: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............ Passed 3.45 sec | |
| Start 76: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate | |
| 6/183 Test #122: testcorenrn_kin::coreneuron_cpu_offline::preparation ............... Passed 3.73 sec | |
| Start 77: testcorenrn_bbcore::coreneuron_gpu_offline | |
| 7/183 Test #98: testcorenrn_deriv::coreneuron_gpu_offline::preparation ............. Passed 4.16 sec | |
| Start 79: testcorenrn_bbcore::coreneuron_cpu_online | |
| 8/183 Test #102: testcorenrn_deriv::coreneuron_cpu_offline::preparation ............. Passed 4.26 sec | |
| Start 80: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate | |
| 9/183 Test #112: testcorenrn_gf::coreneuron_cpu_offline::preparation ................ Passed 7.76 sec | |
| Start 130: testcorenrn_patstim::coreneuron_cpu_offline::preparation | |
| 10/183 Test #127: testcorenrn_patstim::coreneuron_gpu_offline::preparation ........... Passed 5.73 sec | |
| Start 81: testcorenrn_bbcore::coreneuron_cpu_offline | |
| 11/183 Test #108: testcorenrn_gf::coreneuron_gpu_offline::preparation ................ Passed 9.13 sec | |
| Start 136: testcorenrn_vecplay::coreneuron_gpu_offline::preparation | |
| 12/183 Test #74: testcorenrn_bbcore::neuron ......................................... Passed 6.11 sec | |
| Start 84: testcorenrn_conc::neuron | |
| 13/183 Test #61: external_ringtest::neuron .......................................... Passed 6.84 sec | |
| Start 85: testcorenrn_conc::coreneuron_gpu_online | |
| 14/183 Test #130: testcorenrn_patstim::coreneuron_cpu_offline::preparation ........... Passed 2.99 sec | |
| Start 140: testcorenrn_vecplay::coreneuron_cpu_offline::preparation | |
| 15/183 Test #84: testcorenrn_conc::neuron ........................................... Passed 1.50 sec | |
| Start 86: testcorenrn_conc::coreneuron_gpu_online_psolve_alternate | |
| 16/183 Test #136: testcorenrn_vecplay::coreneuron_gpu_offline::preparation ........... Passed 1.84 sec | |
| Start 156: testcorenrn_watch::coreneuron_gpu_offline::preparation | |
| 17/183 Test #140: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ........... Passed 2.09 sec | |
| Start 160: testcorenrn_watch::coreneuron_cpu_offline::preparation | |
| 18/183 Test #160: testcorenrn_watch::coreneuron_cpu_offline::preparation ............. Passed 7.34 sec | |
| Start 62: external_ringtest::neuron_mpi | |
| 19/183 Test #156: testcorenrn_watch::coreneuron_gpu_offline::preparation ............. Passed 11.48 sec | |
| Start 63: external_ringtest::coreneuron_cpu_mpi_offline_saverestore | |
| 20/183 Test #62: external_ringtest::neuron_mpi ...................................... Passed 4.06 sec | |
| Start 64: external_ringtest::coreneuron_cpu_mpi | |
| 21/183 Test #77: testcorenrn_bbcore::coreneuron_gpu_offline ......................... Passed 28.52 sec | |
| Start 87: testcorenrn_conc::coreneuron_gpu_offline | |
| 22/183 Test #66: external_ringtest::coreneuron_cpu_mpi_offline::preparation ......... Passed 40.79 sec | |
| Start 65: external_ringtest::coreneuron_cpu_mpi_offline | |
| 23/183 Test #85: testcorenrn_conc::coreneuron_gpu_online ............................ Passed 30.83 sec | |
| Start 89: testcorenrn_conc::coreneuron_cpu_online | |
| 24/183 Test #79: testcorenrn_bbcore::coreneuron_cpu_online .......................... Passed 45.46 sec | |
| Start 90: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate | |
| 25/183 Test #80: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ......... Passed 45.41 sec | |
| Start 91: testcorenrn_conc::coreneuron_cpu_offline | |
| 26/183 Test #71: external_ringtest::coreneuron_gpu_mpi_offline::preparation ......... Passed 49.76 sec | |
| Start 68: external_ringtest::coreneuron_gpu_mpi_offline_saverestore | |
| 27/183 Test #75: testcorenrn_bbcore::coreneuron_gpu_online .......................... Passed 46.45 sec | |
| Start 94: testcorenrn_deriv::neuron | |
| 28/183 Test #81: testcorenrn_bbcore::coreneuron_cpu_offline ......................... Passed 40.89 sec | |
| Start 95: testcorenrn_deriv::coreneuron_gpu_online | |
| 29/183 Test #76: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate ......... Passed 47.57 sec | |
| Start 96: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate | |
| 30/183 Test #94: testcorenrn_deriv::neuron .......................................... Passed 2.08 sec | |
| Start 97: testcorenrn_deriv::coreneuron_gpu_offline | |
| 31/183 Test #64: external_ringtest::coreneuron_cpu_mpi .............................. Passed 58.83 sec | |
| Start 69: external_ringtest::coreneuron_gpu_mpi | |
| 32/183 Test #89: testcorenrn_conc::coreneuron_cpu_online ............................ Passed 42.69 sec | |
| Start 99: testcorenrn_deriv::coreneuron_cpu_online | |
| 33/183 Test #87: testcorenrn_conc::coreneuron_gpu_offline ........................... Passed 51.51 sec | |
| Start 100: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate | |
| 34/183 Test #86: testcorenrn_conc::coreneuron_gpu_online_psolve_alternate ........... Passed 73.01 sec | |
| Start 101: testcorenrn_deriv::coreneuron_cpu_offline | |
| 35/183 Test #65: external_ringtest::coreneuron_cpu_mpi_offline ...................... Passed 53.56 sec | |
| Start 70: external_ringtest::coreneuron_gpu_mpi_offline | |
| 36/183 Test #91: testcorenrn_conc::coreneuron_cpu_offline ........................... Passed 56.80 sec | |
| Start 114: testcorenrn_kin::neuron | |
| 37/183 Test #95: testcorenrn_deriv::coreneuron_gpu_online ........................... Passed 57.56 sec | |
| Start 115: testcorenrn_kin::coreneuron_gpu_online | |
| 38/183 Test #114: testcorenrn_kin::neuron ............................................ Passed 2.11 sec | |
| Start 116: testcorenrn_kin::coreneuron_gpu_online_psolve_alternate | |
| 39/183 Test #90: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ........... Passed 69.85 sec | |
| Start 117: testcorenrn_kin::coreneuron_gpu_offline | |
| 40/183 Test #97: testcorenrn_deriv::coreneuron_gpu_offline .......................... Passed 68.51 sec | |
| Start 119: testcorenrn_kin::coreneuron_cpu_online | |
| 41/183 Test #101: testcorenrn_deriv::coreneuron_cpu_offline .......................... Passed 51.75 sec | |
| Start 120: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate | |
| 42/183 Test #99: testcorenrn_deriv::coreneuron_cpu_online ........................... Passed 52.14 sec | |
| Start 121: testcorenrn_kin::coreneuron_cpu_offline | |
| 43/183 Test #100: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate .......... Passed 51.90 sec | |
| Start 125: testcorenrn_patstim::coreneuron_gpu_offline_saverestore | |
| 44/183 Test #69: external_ringtest::coreneuron_gpu_mpi .............................. Passed 52.44 sec | |
| Start 104: testcorenrn_gf::neuron | |
| 45/183 Test #96: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate .......... Passed 84.81 sec | |
| Start 126: testcorenrn_patstim::coreneuron_gpu_offline | |
| 46/183 Test #104: testcorenrn_gf::neuron ............................................. Passed 2.12 sec | |
| Start 105: testcorenrn_gf::coreneuron_gpu_online | |
| 47/183 Test #70: external_ringtest::coreneuron_gpu_mpi_offline ...................... Passed 62.55 sec | |
| Start 106: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate | |
| 48/183 Test #115: testcorenrn_kin::coreneuron_gpu_online ............................. Passed 54.61 sec | |
| Start 165: channel_benchmark_hippo::neuron | |
| 49/183 Test #117: testcorenrn_kin::coreneuron_gpu_offline ............................ Passed 43.36 sec | |
| Start 166: channel_benchmark_hippo::coreneuron_gpu_online | |
| 50/183 Test #119: testcorenrn_kin::coreneuron_cpu_online ............................. Passed 55.50 sec | |
| Start 167: channel_benchmark_hippo::coreneuron_gpu_filemode | |
| 51/183 Test #116: testcorenrn_kin::coreneuron_gpu_online_psolve_alternate ............ Passed 74.84 sec | |
| Start 168: channel_benchmark_hippo::coreneuron_cpu_online | |
| 52/183 Test #120: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ............ Passed 54.59 sec | |
| Start 169: channel_benchmark_hippo::coreneuron_cpu_filemode | |
| 53/183 Test #121: testcorenrn_kin::coreneuron_cpu_offline ............................ Passed 66.04 sec | |
| Start 171: channel_benchmark_sscx::neuron | |
| 54/183 Test #126: testcorenrn_patstim::coreneuron_gpu_offline ........................ Passed 74.46 sec | |
| Start 172: channel_benchmark_sscx::coreneuron_gpu_online | |
| 55/183 Test #105: testcorenrn_gf::coreneuron_gpu_online .............................. Passed 100.89 sec | |
| Start 107: testcorenrn_gf::coreneuron_gpu_offline | |
| 56/183 Test #106: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate ............. Passed 106.52 sec | |
| Start 109: testcorenrn_gf::coreneuron_cpu_online | |
| 57/183 Test #165: channel_benchmark_hippo::neuron .................................... Passed 118.91 sec | |
| Start 173: channel_benchmark_sscx::coreneuron_gpu_filemode | |
| 58/183 Test #125: testcorenrn_patstim::coreneuron_gpu_offline_saverestore ............ Passed 163.79 sec | |
| Start 174: channel_benchmark_sscx::coreneuron_cpu_online | |
| 59/183 Test #63: external_ringtest::coreneuron_cpu_mpi_offline_saverestore .......... Passed 278.93 sec | |
| Start 110: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate | |
| 60/183 Test #171: channel_benchmark_sscx::neuron ..................................... Passed 132.53 sec | |
| Start 175: channel_benchmark_sscx::coreneuron_cpu_filemode | |
| 61/183 Test #166: channel_benchmark_hippo::coreneuron_gpu_online ..................... Passed 173.42 sec | |
| Start 1: testneuron | |
| 62/183 Test #1: testneuron ......................................................... Passed 0.06 sec | |
| Start 2: ringtest | |
| 63/183 Test #2: ringtest ........................................................... Passed 0.24 sec | |
| Start 3: connect_dend | |
| 64/183 Test #3: connect_dend ....................................................... Passed 0.17 sec | |
| Start 4: mpi_init::nrniv_mpiopt | |
| 65/183 Test #4: mpi_init::nrniv_mpiopt ............................................. Passed 0.52 sec | |
| Start 5: mpi_init::nrniv_nrnmpi_init | |
| 66/183 Test #5: mpi_init::nrniv_nrnmpi_init ........................................ Passed 0.22 sec | |
| Start 6: mpi_init::python_nrnmpi_init | |
| 67/183 Test #6: mpi_init::python_nrnmpi_init ....................................... Passed 0.78 sec | |
| Start 7: mpi_init::python_mpienv | |
| 68/183 Test #7: mpi_init::python_mpienv ............................................ Passed 2.85 sec | |
| Start 8: mpi_init::nrniv_mpiexec_mpiopt | |
| 69/183 Test #8: mpi_init::nrniv_mpiexec_mpiopt ..................................... Passed 1.47 sec | |
| Start 9: mpi_init::nrniv_mpiexec_nrnmpi_init | |
| 70/183 Test #9: mpi_init::nrniv_mpiexec_nrnmpi_init ................................ Passed 1.36 sec | |
| Start 10: mpi_init::python_mpiexec_nrnmpi_init | |
| 71/183 Test #107: testcorenrn_gf::coreneuron_gpu_offline ............................. Passed 105.47 sec | |
| Start 111: testcorenrn_gf::coreneuron_cpu_offline | |
| 72/183 Test #10: mpi_init::python_mpiexec_nrnmpi_init ............................... Passed 1.87 sec | |
| Start 11: mpi_init::python_mpiexec_mpienv | |
| 73/183 Test #11: mpi_init::python_mpiexec_mpienv .................................... Passed 2.60 sec | |
| Start 12: pynrn::basic_tests | |
| 74/183 Test #109: testcorenrn_gf::coreneuron_cpu_online .............................. Passed 105.22 sec | |
| Start 124: testcorenrn_patstim::neuron | |
| 75/183 Test #68: external_ringtest::coreneuron_gpu_mpi_offline_saverestore .......... Passed 324.95 sec | |
| Start 128: testcorenrn_patstim::coreneuron_cpu_offline_saverestore | |
| 76/183 Test #124: testcorenrn_patstim::neuron ........................................ Passed 8.96 sec | |
| Start 129: testcorenrn_patstim::coreneuron_cpu_offline | |
| 77/183 Test #12: pynrn::basic_tests ................................................. Passed 29.72 sec | |
| Start 13: parallel_tests | |
| 78/183 Test #168: channel_benchmark_hippo::coreneuron_cpu_online ..................... Passed 199.56 sec | |
| Start 14: parallel_partrans | |
| 79/183 Test #167: channel_benchmark_hippo::coreneuron_gpu_filemode ................... Passed 207.47 sec | |
| Start 15: parallel_netpar | |
| 80/183 Test #169: channel_benchmark_hippo::coreneuron_cpu_filemode ................... Passed 193.21 sec | |
| Start 16: parallel_bas | |
| 81/183 Test #13: parallel_tests ..................................................... Passed 7.29 sec | |
| Start 17: coreneuron_modtests::version_macros | |
| 82/183 Test #14: parallel_partrans .................................................. Passed 3.32 sec | |
| Start 18: coreneuron_modtests::fornetcon_py_cpu | |
| 83/183 Test #15: parallel_netpar .................................................... Passed 3.18 sec | |
| Start 19: coreneuron_modtests::direct_py_cpu | |
| 84/183 Test #16: parallel_bas ....................................................... Passed 4.84 sec | |
| Start 20: coreneuron_modtests::direct_hoc_cpu | |
| 85/183 Test #172: channel_benchmark_sscx::coreneuron_gpu_online ...................... Passed 180.04 sec | |
| Start 21: coreneuron_modtests::spikes_py_cpu | |
| 86/183 Test #111: testcorenrn_gf::coreneuron_cpu_offline ............................. Passed 65.77 sec | |
| Start 132: testcorenrn_vecplay::neuron | |
| 87/183 Test #174: channel_benchmark_sscx::coreneuron_cpu_online ...................... Passed 111.09 sec | |
| Start 22: coreneuron_modtests::spikes_file_mode_py_cpu | |
| 88/183 Test #173: channel_benchmark_sscx::coreneuron_gpu_filemode .................... Passed 130.99 sec | |
| Start 23: coreneuron_modtests::fast_imem_py_cpu | |
| 89/183 Test #132: testcorenrn_vecplay::neuron ........................................ Passed 2.68 sec | |
| Start 133: testcorenrn_vecplay::coreneuron_gpu_online | |
| 90/183 Test #23: coreneuron_modtests::fast_imem_py_cpu .............................. Passed 2.30 sec | |
| Start 24: coreneuron_modtests::datareturn_py_cpu | |
| 91/183 Test #129: testcorenrn_patstim::coreneuron_cpu_offline ........................ Passed 36.81 sec | |
| Start 134: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate | |
| 92/183 Test #19: coreneuron_modtests::direct_py_cpu ................................. Passed 30.62 sec | |
| Start 25: coreneuron_modtests::test_units_py_cpu | |
| 93/183 Test #17: coreneuron_modtests::version_macros ................................ Passed 31.80 sec | |
| Start 26: coreneuron_modtests::test_netmove_py_cpu | |
| 94/183 Test #18: coreneuron_modtests::fornetcon_py_cpu .............................. Passed 30.94 sec | |
| Start 27: coreneuron_modtests::test_pointer_py_cpu | |
| 95/183 Test #110: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ............. Passed 116.72 sec | |
| Start 135: testcorenrn_vecplay::coreneuron_gpu_offline | |
| 96/183 Test #175: channel_benchmark_sscx::coreneuron_cpu_filemode .................... Passed 84.81 sec | |
| Start 28: coreneuron_modtests::test_watchrange_py_cpu | |
| 97/183 Test #20: coreneuron_modtests::direct_hoc_cpu ................................ Passed 43.81 sec | |
| Start 29: coreneuron_modtests::test_psolve_py_cpu | |
| 98/183 Test #21: coreneuron_modtests::spikes_py_cpu ................................. Passed 42.18 sec | |
| Start 30: coreneuron_modtests::test_ba_py_cpu | |
| 99/183 Test #22: coreneuron_modtests::spikes_file_mode_py_cpu ....................... Passed 31.20 sec | |
| Start 31: coreneuron_modtests::test_natrans_py_cpu | |
| 100/183 Test #24: coreneuron_modtests::datareturn_py_cpu ............................. Passed 37.23 sec | |
| Start 35: coreneuron_modtests::fornetcon_py_gpu | |
| 101/183 Test #25: coreneuron_modtests::test_units_py_cpu ............................. Passed 39.90 sec | |
| Start 36: coreneuron_modtests::direct_py_gpu | |
| 102/183 Test #28: coreneuron_modtests::test_watchrange_py_cpu ........................ Passed 37.99 sec | |
| Start 37: coreneuron_modtests::direct_hoc_gpu | |
| 103/183 Test #26: coreneuron_modtests::test_netmove_py_cpu ........................... Passed 39.88 sec | |
| Start 38: coreneuron_modtests::spikes_py_gpu | |
| 104/183 Test #133: testcorenrn_vecplay::coreneuron_gpu_online ......................... Passed 45.25 sec | |
| Start 137: testcorenrn_vecplay::coreneuron_cpu_online | |
| 105/183 Test #135: testcorenrn_vecplay::coreneuron_gpu_offline ........................ Passed 39.84 sec | |
| Start 138: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate | |
| 106/183 Test #128: testcorenrn_patstim::coreneuron_cpu_offline_saverestore ............ Passed 83.45 sec | |
| Start 139: testcorenrn_vecplay::coreneuron_cpu_offline | |
| 107/183 Test #134: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate ........ Passed 45.48 sec | |
| Start 152: testcorenrn_watch::neuron | |
| 108/183 Test #152: testcorenrn_watch::neuron .......................................... Passed 1.56 sec | |
| Start 153: testcorenrn_watch::coreneuron_gpu_online | |
| 109/183 Test #30: coreneuron_modtests::test_ba_py_cpu ................................ Passed 30.19 sec | |
| Start 39: coreneuron_modtests::spikes_file_mode_py_gpu | |
| 110/183 Test #29: coreneuron_modtests::test_psolve_py_cpu ............................ Passed 30.69 sec | |
| Start 40: coreneuron_modtests::fast_imem_py_gpu | |
| 111/183 Test #40: coreneuron_modtests::fast_imem_py_gpu .............................. Passed 0.66 sec | |
| Start 41: coreneuron_modtests::datareturn_py_gpu | |
| 112/183 Test #31: coreneuron_modtests::test_natrans_py_cpu ........................... Passed 27.79 sec | |
| Start 42: coreneuron_modtests::test_units_py_gpu | |
| 113/183 Test #35: coreneuron_modtests::fornetcon_py_gpu .............................. Passed 31.72 sec | |
| Start 43: coreneuron_modtests::test_netmove_py_gpu | |
| 114/183 Test #37: coreneuron_modtests::direct_hoc_gpu ................................ Passed 28.52 sec | |
| Start 44: coreneuron_modtests::test_pointer_py_gpu | |
| 115/183 Test #139: testcorenrn_vecplay::coreneuron_cpu_offline ........................ Passed 28.52 sec | |
| Start 154: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate | |
| 116/183 Test #36: coreneuron_modtests::direct_py_gpu ................................. Passed 40.91 sec | |
| Start 45: coreneuron_modtests::test_watchrange_py_gpu | |
| 117/183 Test #38: coreneuron_modtests::spikes_py_gpu ................................. Passed 40.88 sec | |
| Start 46: coreneuron_modtests::test_psolve_py_gpu | |
| 118/183 Test #39: coreneuron_modtests::spikes_file_mode_py_gpu ....................... Passed 35.31 sec | |
| Start 47: coreneuron_modtests::test_ba_py_gpu | |
| 119/183 Test #41: coreneuron_modtests::datareturn_py_gpu ............................. Passed 34.91 sec | |
| Start 48: coreneuron_modtests::test_natrans_py_gpu | |
| 120/183 Test #137: testcorenrn_vecplay::coreneuron_cpu_online ......................... Passed 40.49 sec | |
| Start 155: testcorenrn_watch::coreneuron_gpu_offline | |
| 121/183 Test #138: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........ Passed 40.92 sec | |
| Start 157: testcorenrn_watch::coreneuron_cpu_online | |
| 122/183 Test #153: testcorenrn_watch::coreneuron_gpu_online ........................... Passed 37.70 sec | |
| Start 158: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate | |
| 123/183 Test #42: coreneuron_modtests::test_units_py_gpu ............................. Passed 37.25 sec | |
| Start 52: modlunit_unitstest | |
| 124/183 Test #52: modlunit_unitstest ................................................. Passed 0.02 sec | |
| Start 53: modlunit_hh | |
| 125/183 Test #53: modlunit_hh ........................................................ Passed 0.03 sec | |
| Start 54: modlunit_stim | |
| 126/183 Test #54: modlunit_stim ...................................................... Passed 0.03 sec | |
| Start 55: modlunit_pattern | |
| 127/183 Test #55: modlunit_pattern ................................................... Passed 0.01 sec | |
| Start 56: external_nrntest | |
| 128/183 Test #43: coreneuron_modtests::test_netmove_py_gpu ........................... Passed 36.15 sec | |
| Start 83: testcorenrn_bbcore::compare_results | |
| 129/183 Test #83: testcorenrn_bbcore::compare_results ................................ Passed 0.06 sec | |
| Start 93: testcorenrn_conc::compare_results | |
| 130/183 Test #93: testcorenrn_conc::compare_results .................................. Passed 0.05 sec | |
| Start 103: testcorenrn_deriv::compare_results | |
| 131/183 Test #103: testcorenrn_deriv::compare_results ................................. Passed 0.05 sec | |
| Start 113: testcorenrn_gf::compare_results | |
| 132/183 Test #113: testcorenrn_gf::compare_results .................................... Passed 0.06 sec | |
| Start 123: testcorenrn_kin::compare_results | |
| 133/183 Test #123: testcorenrn_kin::compare_results ................................... Passed 0.05 sec | |
| Start 131: testcorenrn_patstim::compare_results | |
| 134/183 Test #131: testcorenrn_patstim::compare_results ............................... Passed 0.06 sec | |
| Start 141: testcorenrn_vecplay::compare_results | |
| 135/183 Test #141: testcorenrn_vecplay::compare_results ............................... Passed 0.06 sec | |
| Start 170: channel_benchmark_hippo::compare_results | |
| 136/183 Test #170: channel_benchmark_hippo::compare_results ........................... Passed 0.05 sec | |
| Start 176: channel_benchmark_sscx::compare_results | |
| 137/183 Test #176: channel_benchmark_sscx::compare_results ............................ Passed 0.18 sec | |
| 138/183 Test #47: coreneuron_modtests::test_ba_py_gpu ................................ Passed 30.61 sec | |
| Start 159: testcorenrn_watch::coreneuron_cpu_offline | |
| 139/183 Test #45: coreneuron_modtests::test_watchrange_py_gpu ........................ Passed 30.75 sec | |
| 140/183 Test #46: coreneuron_modtests::test_psolve_py_gpu ............................ Passed 30.79 sec | |
| Start 162: testcorenrn_netstimdirect::direct_netstimdirect | |
| 141/183 Test #48: coreneuron_modtests::test_natrans_py_gpu ........................... Passed 30.53 sec | |
| 142/183 Test #155: testcorenrn_watch::coreneuron_gpu_offline .......................... Passed 35.90 sec | |
| Start 163: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate | |
| 143/183 Test #157: testcorenrn_watch::coreneuron_cpu_online ........................... Passed 36.26 sec | |
| Start 32: coreneuron_modtests::spikes_mpi_py_cpu | |
| 144/183 Test #158: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate .......... Passed 38.59 sec | |
| Start 33: coreneuron_modtests::spikes_mpi_file_mode_py_cpu | |
| 145/183 Test #154: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate .......... Passed 57.04 sec | |
| Start 34: coreneuron_modtests::inputpresyn_py_cpu | |
| 146/183 Test #159: testcorenrn_watch::coreneuron_cpu_offline .......................... Passed 24.42 sec | |
| Start 49: coreneuron_modtests::spikes_mpi_py_gpu | |
| Start 161: testcorenrn_watch::compare_results | |
| 147/183 Test #161: testcorenrn_watch::compare_results ................................. Passed 0.19 sec | |
| 148/183 Test #162: testcorenrn_netstimdirect::direct_netstimdirect .................... Passed 26.13 sec | |
| Start 50: coreneuron_modtests::spikes_mpi_file_mode_py_gpu | |
| 149/183 Test #32: coreneuron_modtests::spikes_mpi_py_cpu ............................. Passed 24.85 sec | |
| Start 51: coreneuron_modtests::inputpresyn_py_gpu | |
| 150/183 Test #163: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ... Passed 26.89 sec | |
| Start 164: testcorenrn_netstimdirect::compare_results | |
| 151/183 Test #164: testcorenrn_netstimdirect::compare_results ......................... Passed 0.58 sec | |
| 152/183 Test #33: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ................... Passed 25.26 sec | |
| Start 146: testcorenrn_vecevent::coreneuron_gpu_offline::preparation | |
| 153/183 Test #34: coreneuron_modtests::inputpresyn_py_cpu ............................ Passed 21.81 sec | |
| 154/183 Test #146: testcorenrn_vecevent::coreneuron_gpu_offline::preparation .......... Passed 29.59 sec | |
| Start 150: testcorenrn_vecevent::coreneuron_cpu_offline::preparation | |
| 155/183 Test #150: testcorenrn_vecevent::coreneuron_cpu_offline::preparation .......... Passed 3.38 sec | |
| Start 178: olfactory-bulb-3d::neuron::preparation | |
| 156/183 Test #178: olfactory-bulb-3d::neuron::preparation ............................. Passed 0.02 sec | |
| Start 180: olfactory-bulb-3d::coreneuron_gpu_online::preparation | |
| 157/183 Test #180: olfactory-bulb-3d::coreneuron_gpu_online::preparation .............. Passed 0.01 sec | |
| Start 182: olfactory-bulb-3d::coreneuron_cpu_online::preparation | |
| 158/183 Test #182: olfactory-bulb-3d::coreneuron_cpu_online::preparation .............. Passed 0.02 sec | |
| Start 57: reduced_dentate::neuron | |
| 159/183 Test #49: coreneuron_modtests::spikes_mpi_py_gpu ............................. Passed 50.81 sec | |
| Start 58: reduced_dentate::coreneuron_cpu | |
| 160/183 Test #51: coreneuron_modtests::inputpresyn_py_gpu ............................ Passed 43.92 sec | |
| 161/183 Test #50: coreneuron_modtests::spikes_mpi_file_mode_py_gpu ................... Passed 49.27 sec | |
| Start 59: reduced_dentate::coreneuron_gpu | |
| 162/183 Test #57: reduced_dentate::neuron ............................................ Passed 12.18 sec | |
| Start 142: testcorenrn_vecevent::neuron | |
| 163/183 Test #27: coreneuron_modtests::test_pointer_py_cpu ........................... Passed 198.84 sec | |
| 164/183 Test #44: coreneuron_modtests::test_pointer_py_gpu ........................... Passed 155.29 sec | |
| 165/183 Test #142: testcorenrn_vecevent::neuron ....................................... Passed 60.20 sec | |
| Start 67: external_ringtest::coreneuron_cpu_mpi_threads | |
| 166/183 Test #58: reduced_dentate::coreneuron_cpu .................................... Passed 81.24 sec | |
| Start 143: testcorenrn_vecevent::coreneuron_gpu_online | |
| 167/183 Test #59: reduced_dentate::coreneuron_gpu .................................... Passed 81.13 sec | |
| Start 144: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate | |
| Start 60: reduced_dentate::compare_results | |
| 168/183 Test #60: reduced_dentate::compare_results ................................... Passed 0.17 sec | |
| 169/183 Test #67: external_ringtest::coreneuron_cpu_mpi_threads ...................... Passed 19.75 sec | |
| Start 72: external_ringtest::coreneuron_gpu_mpi_threads | |
| 170/183 Test #143: testcorenrn_vecevent::coreneuron_gpu_online ........................ Passed 11.12 sec | |
| Start 145: testcorenrn_vecevent::coreneuron_gpu_offline | |
| 171/183 Test #72: external_ringtest::coreneuron_gpu_mpi_threads ...................... Passed 25.43 sec | |
| Start 147: testcorenrn_vecevent::coreneuron_cpu_online | |
| Start 73: external_ringtest::compare_results | |
| 172/183 Test #73: external_ringtest::compare_results ................................. Passed 0.07 sec | |
| 173/183 Test #144: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate ....... Passed 34.10 sec | |
| Start 148: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate | |
| 174/183 Test #145: testcorenrn_vecevent::coreneuron_gpu_offline ....................... Passed 24.02 sec | |
| Start 149: testcorenrn_vecevent::coreneuron_cpu_offline | |
| 175/183 Test #147: testcorenrn_vecevent::coreneuron_cpu_online ........................ Passed 9.17 sec | |
| Start 177: olfactory-bulb-3d::neuron | |
| 176/183 Test #149: testcorenrn_vecevent::coreneuron_cpu_offline ....................... Passed 11.37 sec | |
| Start 179: olfactory-bulb-3d::coreneuron_gpu_online | |
| 177/183 Test #148: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ....... Passed 35.82 sec | |
| Start 181: olfactory-bulb-3d::coreneuron_cpu_online | |
| Start 151: testcorenrn_vecevent::compare_results | |
| 178/183 Test #151: testcorenrn_vecevent::compare_results .............................. Passed 0.07 sec | |
| 179/183 Test #56: external_nrntest ................................................... Passed 249.65 sec | |
| 180/183 Test #179: olfactory-bulb-3d::coreneuron_gpu_online ........................... Passed 119.24 sec | |
| 181/183 Test #177: olfactory-bulb-3d::neuron .......................................... Passed 161.87 sec | |
| 182/183 Test #181: olfactory-bulb-3d::coreneuron_cpu_online ........................... Passed 130.58 sec | |
| Start 183: olfactory-bulb-3d::compare_results | |
| 183/183 Test #183: olfactory-bulb-3d::compare_results ................................. Passed 0.23 sec | |
| 100% tests passed, 0 tests failed out of 183 | |
| Total Test time (real) = 886.24 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1649846821:step_script [0Ksection_start:1649846821:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=10658 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=211038 responseStatus[0;m=201 Created token[0;m=s5GYjSa3 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=10713 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=211038 responseStatus[0;m=201 Created token[0;m=s5GYjSa3 | |
| section_end:1649846823:upload_artifacts_on_success [0Ksection_start:1649846823:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1649846824:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1649845839:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1649845839:resolve_secrets [0Ksection_start:1649845839:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor991264248, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 48472, build ref 9a466a6e2a1c807e4d6045f3fc0b1fbaf51370b6, job ID 211037 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag | |
| A slurm job will be created with name GL_J211037_PROD_P112_CP5_C5 | |
| Job parameters: memory=76G, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=16 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| Submitted batch job 379529 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=16 --cpus-per-task=1 --mem=76G --job-name=GL_J211037_PROD_P112_CP5_C5 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P48472 --ntasks=16 --jobid=379529 --cpus-per-task=1 --mem=76G | |
| section_end:1649845840:prepare_executor [0Ksection_start:1649845840:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on ldir01u09.bbp.epfl.ch via bbpv1.epfl.ch... | |
| section_end:1649845848:prepare_script [0Ksection_start:1649845848:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1649845849:get_sources [0Ksection_start:1649845849:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:neuron:nmodl:nvhpc:omp (211026)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=65485 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=211026 responseStatus[0;m=200 OK token[0;m=Pm8KebQh | |
| section_end:1649845851:download_artifacts [0Ksection_start:1649845851:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i4n0 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20220413-1031 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P48472/J211026/spack-build/spack-stage-neuron-develop-7rnzemtajzavcycpixj4vl565kzy3d6v/spack-build-7rnzemt | |
| Start 66: external_ringtest::coreneuron_cpu_mpi_offline::preparation | |
| Start 71: external_ringtest::coreneuron_gpu_mpi_offline::preparation | |
| Start 78: testcorenrn_bbcore::coreneuron_gpu_offline::preparation | |
| Start 82: testcorenrn_bbcore::coreneuron_cpu_offline::preparation | |
| Start 88: testcorenrn_conc::coreneuron_gpu_offline::preparation | |
| Start 92: testcorenrn_conc::coreneuron_cpu_offline::preparation | |
| Start 98: testcorenrn_deriv::coreneuron_gpu_offline::preparation | |
| Start 102: testcorenrn_deriv::coreneuron_cpu_offline::preparation | |
| Start 108: testcorenrn_gf::coreneuron_gpu_offline::preparation | |
| Start 112: testcorenrn_gf::coreneuron_cpu_offline::preparation | |
| Start 118: testcorenrn_kin::coreneuron_gpu_offline::preparation | |
| Start 122: testcorenrn_kin::coreneuron_cpu_offline::preparation | |
| 1/183 Test #78: testcorenrn_bbcore::coreneuron_gpu_offline::preparation ............ Passed 2.36 sec | |
| Start 127: testcorenrn_patstim::coreneuron_gpu_offline::preparation | |
| 2/183 Test #88: testcorenrn_conc::coreneuron_gpu_offline::preparation .............. Passed 3.64 sec | |
| Start 61: external_ringtest::neuron | |
| 3/183 Test #92: testcorenrn_conc::coreneuron_cpu_offline::preparation .............. Passed 3.78 sec | |
| Start 74: testcorenrn_bbcore::neuron | |
| 4/183 Test #82: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............ Passed 3.90 sec | |
| Start 75: testcorenrn_bbcore::coreneuron_gpu_online | |
| 5/183 Test #98: testcorenrn_deriv::coreneuron_gpu_offline::preparation ............. Passed 3.89 sec | |
| Start 76: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate | |
| 6/183 Test #118: testcorenrn_kin::coreneuron_gpu_offline::preparation ............... Passed 4.10 sec | |
| Start 77: testcorenrn_bbcore::coreneuron_gpu_offline | |
| 7/183 Test #102: testcorenrn_deriv::coreneuron_cpu_offline::preparation ............. Passed 4.14 sec | |
| Start 79: testcorenrn_bbcore::coreneuron_cpu_online | |
| 8/183 Test #122: testcorenrn_kin::coreneuron_cpu_offline::preparation ............... Passed 4.35 sec | |
| Start 80: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate | |
| 9/183 Test #112: testcorenrn_gf::coreneuron_cpu_offline::preparation ................ Passed 4.52 sec | |
| Start 130: testcorenrn_patstim::coreneuron_cpu_offline::preparation | |
| 10/183 Test #108: testcorenrn_gf::coreneuron_gpu_offline::preparation ................ Passed 4.58 sec | |
| Start 136: testcorenrn_vecplay::coreneuron_gpu_offline::preparation | |
| 11/183 Test #127: testcorenrn_patstim::coreneuron_gpu_offline::preparation ........... Passed 2.28 sec | |
| Start 81: testcorenrn_bbcore::coreneuron_cpu_offline | |
| 12/183 Test #61: external_ringtest::neuron .......................................... Passed 3.43 sec | |
| Start 84: testcorenrn_conc::neuron | |
| 13/183 Test #74: testcorenrn_bbcore::neuron ......................................... Passed 4.64 sec | |
| Start 85: testcorenrn_conc::coreneuron_gpu_online | |
| 14/183 Test #136: testcorenrn_vecplay::coreneuron_gpu_offline::preparation ........... Passed 4.82 sec | |
| Start 140: testcorenrn_vecplay::coreneuron_cpu_offline::preparation | |
| 15/183 Test #84: testcorenrn_conc::neuron ........................................... Passed 2.44 sec | |
| Start 86: testcorenrn_conc::coreneuron_gpu_online_psolve_alternate | |
| 16/183 Test #130: testcorenrn_patstim::coreneuron_cpu_offline::preparation ........... Passed 5.84 sec | |
| Start 156: testcorenrn_watch::coreneuron_gpu_offline::preparation | |
| 17/183 Test #71: external_ringtest::coreneuron_gpu_mpi_offline::preparation ......... Passed 11.16 sec | |
| Start 160: testcorenrn_watch::coreneuron_cpu_offline::preparation | |
| 18/183 Test #66: external_ringtest::coreneuron_cpu_mpi_offline::preparation ......... Passed 11.21 sec | |
| Start 62: external_ringtest::neuron_mpi | |
| 19/183 Test #140: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ........... Passed 2.62 sec | |
| Start 63: external_ringtest::coreneuron_cpu_mpi_offline_saverestore | |
| 20/183 Test #156: testcorenrn_watch::coreneuron_gpu_offline::preparation ............. Passed 4.75 sec | |
| Start 64: external_ringtest::coreneuron_cpu_mpi | |
| 21/183 Test #160: testcorenrn_watch::coreneuron_cpu_offline::preparation ............. Passed 4.50 sec | |
| Start 65: external_ringtest::coreneuron_cpu_mpi_offline | |
| 22/183 Test #80: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ......... Passed 13.47 sec | |
| Start 87: testcorenrn_conc::coreneuron_gpu_offline | |
| 23/183 Test #81: testcorenrn_bbcore::coreneuron_cpu_offline ......................... Passed 13.41 sec | |
| Start 89: testcorenrn_conc::coreneuron_cpu_online | |
| 24/183 Test #79: testcorenrn_bbcore::coreneuron_cpu_online .......................... Passed 14.05 sec | |
| Start 90: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate | |
| 25/183 Test #77: testcorenrn_bbcore::coreneuron_gpu_offline ......................... Passed 15.50 sec | |
| Start 91: testcorenrn_conc::coreneuron_cpu_offline | |
| 26/183 Test #75: testcorenrn_bbcore::coreneuron_gpu_online .......................... Passed 16.47 sec | |
| Start 94: testcorenrn_deriv::neuron | |
| 27/183 Test #85: testcorenrn_conc::coreneuron_gpu_online ............................ Passed 13.32 sec | |
| Start 95: testcorenrn_deriv::coreneuron_gpu_online | |
| 28/183 Test #76: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate ......... Passed 18.06 sec | |
| Start 96: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate | |
| 29/183 Test #62: external_ringtest::neuron_mpi ...................................... Passed 15.37 sec | |
| Start 68: external_ringtest::coreneuron_gpu_mpi_offline_saverestore | |
| 30/183 Test #91: testcorenrn_conc::coreneuron_cpu_offline ........................... Passed 8.22 sec | |
| Start 97: testcorenrn_deriv::coreneuron_gpu_offline | |
| 31/183 Test #86: testcorenrn_conc::coreneuron_gpu_online_psolve_alternate ........... Passed 19.63 sec | |
| Start 99: testcorenrn_deriv::coreneuron_cpu_online | |
| 32/183 Test #94: testcorenrn_deriv::neuron .......................................... Passed 11.04 sec | |
| Start 100: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate | |
| 33/183 Test #65: external_ringtest::coreneuron_cpu_mpi_offline ...................... Passed 16.06 sec | |
| Start 69: external_ringtest::coreneuron_gpu_mpi | |
| 34/183 Test #87: testcorenrn_conc::coreneuron_gpu_offline ........................... Passed 14.03 sec | |
| Start 101: testcorenrn_deriv::coreneuron_cpu_offline | |
| 35/183 Test #89: testcorenrn_conc::coreneuron_cpu_online ............................ Passed 51.79 sec | |
| Start 114: testcorenrn_kin::neuron | |
| 36/183 Test #101: testcorenrn_deriv::coreneuron_cpu_offline .......................... Passed 39.81 sec | |
| Start 115: testcorenrn_kin::coreneuron_gpu_online | |
| 37/183 Test #114: testcorenrn_kin::neuron ............................................ Passed 2.37 sec | |
| Start 116: testcorenrn_kin::coreneuron_gpu_online_psolve_alternate | |
| 38/183 Test #90: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ........... Passed 57.33 sec | |
| Start 117: testcorenrn_kin::coreneuron_gpu_offline | |
| 39/183 Test #99: testcorenrn_deriv::coreneuron_cpu_online ........................... Passed 46.83 sec | |
| Start 119: testcorenrn_kin::coreneuron_cpu_online | |
| 40/183 Test #100: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate .......... Passed 46.15 sec | |
| Start 120: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate | |
| 41/183 Test #97: testcorenrn_deriv::coreneuron_gpu_offline .......................... Passed 49.94 sec | |
| Start 121: testcorenrn_kin::coreneuron_cpu_offline | |
| 42/183 Test #95: testcorenrn_deriv::coreneuron_gpu_online ........................... Passed 56.00 sec | |
| Start 125: testcorenrn_patstim::coreneuron_gpu_offline_saverestore | |
| 43/183 Test #69: external_ringtest::coreneuron_gpu_mpi .............................. Passed 46.13 sec | |
| Start 70: external_ringtest::coreneuron_gpu_mpi_offline | |
| 44/183 Test #64: external_ringtest::coreneuron_cpu_mpi .............................. Passed 62.69 sec | |
| Start 104: testcorenrn_gf::neuron | |
| 45/183 Test #96: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate .......... Passed 59.43 sec | |
| Start 126: testcorenrn_patstim::coreneuron_gpu_offline | |
| 46/183 Test #104: testcorenrn_gf::neuron ............................................. Passed 3.52 sec | |
| Start 105: testcorenrn_gf::coreneuron_gpu_online | |
| 47/183 Test #115: testcorenrn_kin::coreneuron_gpu_online ............................. Passed 35.54 sec | |
| Start 165: channel_benchmark_hippo::neuron | |
| 48/183 Test #119: testcorenrn_kin::coreneuron_cpu_online ............................. Passed 42.40 sec | |
| Start 166: channel_benchmark_hippo::coreneuron_gpu_online | |
| 49/183 Test #116: testcorenrn_kin::coreneuron_gpu_online_psolve_alternate ............ Passed 49.77 sec | |
| Start 167: channel_benchmark_hippo::coreneuron_gpu_filemode | |
| 50/183 Test #121: testcorenrn_kin::coreneuron_cpu_offline ............................ Passed 45.11 sec | |
| Start 168: channel_benchmark_hippo::coreneuron_cpu_online | |
| 51/183 Test #117: testcorenrn_kin::coreneuron_gpu_offline ............................ Passed 48.05 sec | |
| Start 169: channel_benchmark_hippo::coreneuron_cpu_filemode | |
| 52/183 Test #120: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ............ Passed 46.29 sec | |
| Start 171: channel_benchmark_sscx::neuron | |
| 53/183 Test #126: testcorenrn_patstim::coreneuron_gpu_offline ........................ Passed 58.79 sec | |
| Start 172: channel_benchmark_sscx::coreneuron_gpu_online | |
| 54/183 Test #70: external_ringtest::coreneuron_gpu_mpi_offline ...................... Passed 70.73 sec | |
| Start 106: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate | |
| 55/183 Test #105: testcorenrn_gf::coreneuron_gpu_online .............................. Passed 82.79 sec | |
| Start 107: testcorenrn_gf::coreneuron_gpu_offline | |
| 56/183 Test #125: testcorenrn_patstim::coreneuron_gpu_offline_saverestore ............ Passed 119.33 sec | |
| Start 173: channel_benchmark_sscx::coreneuron_gpu_filemode | |
| 57/183 Test #63: external_ringtest::coreneuron_cpu_mpi_offline_saverestore .......... Passed 237.95 sec | |
| Start 109: testcorenrn_gf::coreneuron_cpu_online | |
| 58/183 Test #165: channel_benchmark_hippo::neuron .................................... Passed 162.15 sec | |
| Start 174: channel_benchmark_sscx::coreneuron_cpu_online | |
| 59/183 Test #68: external_ringtest::coreneuron_gpu_mpi_offline_saverestore .......... Passed 250.71 sec | |
| Start 110: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate | |
| 60/183 Test #171: channel_benchmark_sscx::neuron ..................................... Passed 158.82 sec | |
| Start 175: channel_benchmark_sscx::coreneuron_cpu_filemode | |
| 61/183 Test #107: testcorenrn_gf::coreneuron_gpu_offline ............................. Passed 130.90 sec | |
| Start 111: testcorenrn_gf::coreneuron_cpu_offline | |
| 62/183 Test #106: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate ............. Passed 146.68 sec | |
| Start 124: testcorenrn_patstim::neuron | |
| 63/183 Test #124: testcorenrn_patstim::neuron ........................................ Passed 2.49 sec | |
| Start 128: testcorenrn_patstim::coreneuron_cpu_offline_saverestore | |
| 64/183 Test #166: channel_benchmark_hippo::coreneuron_gpu_online ..................... Passed 229.04 sec | |
| Start 1: testneuron | |
| 65/183 Test #1: testneuron ......................................................... Passed 0.06 sec | |
| Start 2: ringtest | |
| 66/183 Test #2: ringtest ........................................................... Passed 0.24 sec | |
| Start 3: connect_dend | |
| 67/183 Test #3: connect_dend ....................................................... Passed 0.14 sec | |
| Start 4: mpi_init::nrniv_mpiopt | |
| 68/183 Test #4: mpi_init::nrniv_mpiopt ............................................. Passed 0.07 sec | |
| Start 5: mpi_init::nrniv_nrnmpi_init | |
| 69/183 Test #5: mpi_init::nrniv_nrnmpi_init ........................................ Passed 0.07 sec | |
| Start 6: mpi_init::python_nrnmpi_init | |
| 70/183 Test #6: mpi_init::python_nrnmpi_init ....................................... Passed 0.31 sec | |
| Start 7: mpi_init::python_mpienv | |
| 71/183 Test #7: mpi_init::python_mpienv ............................................ Passed 0.39 sec | |
| Start 8: mpi_init::nrniv_mpiexec_mpiopt | |
| 72/183 Test #8: mpi_init::nrniv_mpiexec_mpiopt ..................................... Passed 1.31 sec | |
| Start 9: mpi_init::nrniv_mpiexec_nrnmpi_init | |
| 73/183 Test #9: mpi_init::nrniv_mpiexec_nrnmpi_init ................................ Passed 1.35 sec | |
| Start 10: mpi_init::python_mpiexec_nrnmpi_init | |
| 74/183 Test #109: testcorenrn_gf::coreneuron_cpu_online .............................. Passed 102.14 sec | |
| Start 129: testcorenrn_patstim::coreneuron_cpu_offline | |
| 75/183 Test #10: mpi_init::python_mpiexec_nrnmpi_init ............................... Passed 1.56 sec | |
| Start 11: mpi_init::python_mpiexec_mpienv | |
| 76/183 Test #11: mpi_init::python_mpiexec_mpienv .................................... Passed 1.77 sec | |
| Start 12: pynrn::basic_tests | |
| 77/183 Test #168: channel_benchmark_hippo::coreneuron_cpu_online ..................... Passed 233.43 sec | |
| Start 13: parallel_tests | |
| 78/183 Test #169: channel_benchmark_hippo::coreneuron_cpu_filemode ................... Passed 232.98 sec | |
| Start 14: parallel_partrans | |
| 79/183 Test #172: channel_benchmark_sscx::coreneuron_gpu_online ...................... Passed 221.72 sec | |
| Start 15: parallel_netpar | |
| 80/183 Test #12: pynrn::basic_tests ................................................. Passed 10.01 sec | |
| Start 16: parallel_bas | |
| 81/183 Test #14: parallel_partrans .................................................. Passed 8.18 sec | |
| Start 17: coreneuron_modtests::version_macros | |
| 82/183 Test #13: parallel_tests ..................................................... Passed 9.69 sec | |
| Start 18: coreneuron_modtests::fornetcon_py_cpu | |
| 83/183 Test #167: channel_benchmark_hippo::coreneuron_gpu_filemode ................... Passed 256.66 sec | |
| Start 19: coreneuron_modtests::direct_py_cpu | |
| 84/183 Test #111: testcorenrn_gf::coreneuron_cpu_offline ............................. Passed 95.55 sec | |
| Start 132: testcorenrn_vecplay::neuron | |
| 85/183 Test #175: channel_benchmark_sscx::coreneuron_cpu_filemode .................... Passed 108.29 sec | |
| Start 20: coreneuron_modtests::direct_hoc_cpu | |
| 86/183 Test #174: channel_benchmark_sscx::coreneuron_cpu_online ...................... Passed 121.39 sec | |
| Start 21: coreneuron_modtests::spikes_py_cpu | |
| 87/183 Test #173: channel_benchmark_sscx::coreneuron_gpu_filemode .................... Passed 194.02 sec | |
| Start 22: coreneuron_modtests::spikes_file_mode_py_cpu | |
| 88/183 Test #132: testcorenrn_vecplay::neuron ........................................ Passed 2.75 sec | |
| Start 133: testcorenrn_vecplay::coreneuron_gpu_online | |
| 89/183 Test #16: parallel_bas ....................................................... Passed 35.11 sec | |
| Start 23: coreneuron_modtests::fast_imem_py_cpu | |
| 90/183 Test #110: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ............. Passed 122.19 sec | |
| Start 134: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate | |
| 91/183 Test #23: coreneuron_modtests::fast_imem_py_cpu .............................. Passed 2.29 sec | |
| Start 24: coreneuron_modtests::datareturn_py_cpu | |
| 92/183 Test #129: testcorenrn_patstim::coreneuron_cpu_offline ........................ Passed 78.56 sec | |
| Start 135: testcorenrn_vecplay::coreneuron_gpu_offline | |
| 93/183 Test #15: parallel_netpar .................................................... Passed 74.86 sec | |
| Start 25: coreneuron_modtests::test_units_py_cpu | |
| 94/183 Test #18: coreneuron_modtests::fornetcon_py_cpu .............................. Passed 72.73 sec | |
| Start 26: coreneuron_modtests::test_netmove_py_cpu | |
| 95/183 Test #17: coreneuron_modtests::version_macros ................................ Passed 74.04 sec | |
| Start 27: coreneuron_modtests::test_pointer_py_cpu | |
| 96/183 Test #20: coreneuron_modtests::direct_hoc_cpu ................................ Passed 55.20 sec | |
| Start 28: coreneuron_modtests::test_watchrange_py_cpu | |
| 97/183 Test #19: coreneuron_modtests::direct_py_cpu ................................. Passed 67.21 sec | |
| Start 29: coreneuron_modtests::test_psolve_py_cpu | |
| 98/183 Test #21: coreneuron_modtests::spikes_py_cpu ................................. Passed 55.24 sec | |
| Start 30: coreneuron_modtests::test_ba_py_cpu | |
| 99/183 Test #22: coreneuron_modtests::spikes_file_mode_py_cpu ....................... Passed 55.21 sec | |
| Start 31: coreneuron_modtests::test_natrans_py_cpu | |
| 100/183 Test #128: testcorenrn_patstim::coreneuron_cpu_offline_saverestore ............ Passed 149.97 sec | |
| Start 137: testcorenrn_vecplay::coreneuron_cpu_online | |
| 101/183 Test #24: coreneuron_modtests::datareturn_py_cpu ............................. Passed 49.05 sec | |
| Start 35: coreneuron_modtests::fornetcon_py_gpu | |
| 102/183 Test #133: testcorenrn_vecplay::coreneuron_gpu_online ......................... Passed 59.32 sec | |
| Start 138: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate | |
| 103/183 Test #26: coreneuron_modtests::test_netmove_py_cpu ........................... Passed 30.90 sec | |
| Start 36: coreneuron_modtests::direct_py_gpu | |
| 104/183 Test #135: testcorenrn_vecplay::coreneuron_gpu_offline ........................ Passed 40.98 sec | |
| Start 139: testcorenrn_vecplay::coreneuron_cpu_offline | |
| 105/183 Test #25: coreneuron_modtests::test_units_py_cpu ............................. Passed 37.23 sec | |
| Start 37: coreneuron_modtests::direct_hoc_gpu | |
| 106/183 Test #35: coreneuron_modtests::fornetcon_py_gpu .............................. Passed 37.93 sec | |
| Start 38: coreneuron_modtests::spikes_py_gpu | |
| 107/183 Test #28: coreneuron_modtests::test_watchrange_py_cpu ........................ Passed 43.05 sec | |
| Start 39: coreneuron_modtests::spikes_file_mode_py_gpu | |
| 108/183 Test #29: coreneuron_modtests::test_psolve_py_cpu ............................ Passed 43.15 sec | |
| Start 40: coreneuron_modtests::fast_imem_py_gpu | |
| 109/183 Test #30: coreneuron_modtests::test_ba_py_cpu ................................ Passed 43.23 sec | |
| Start 41: coreneuron_modtests::datareturn_py_gpu | |
| 110/183 Test #31: coreneuron_modtests::test_natrans_py_cpu ........................... Passed 43.33 sec | |
| Start 42: coreneuron_modtests::test_units_py_gpu | |
| 111/183 Test #134: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate ........ Passed 90.10 sec | |
| Start 152: testcorenrn_watch::neuron | |
| 112/183 Test #40: coreneuron_modtests::fast_imem_py_gpu .............................. Passed 5.06 sec | |
| Start 43: coreneuron_modtests::test_netmove_py_gpu | |
| 113/183 Test #152: testcorenrn_watch::neuron .......................................... Passed 5.37 sec | |
| Start 153: testcorenrn_watch::coreneuron_gpu_online | |
| 114/183 Test #137: testcorenrn_vecplay::coreneuron_cpu_online ......................... Passed 48.02 sec | |
| Start 154: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate | |
| 115/183 Test #36: coreneuron_modtests::direct_py_gpu ................................. Passed 33.14 sec | |
| Start 44: coreneuron_modtests::test_pointer_py_gpu | |
| 116/183 Test #138: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........ Passed 51.21 sec | |
| Start 155: testcorenrn_watch::coreneuron_gpu_offline | |
| 117/183 Test #139: testcorenrn_vecplay::coreneuron_cpu_offline ........................ Passed 37.51 sec | |
| Start 157: testcorenrn_watch::coreneuron_cpu_online | |
| 118/183 Test #37: coreneuron_modtests::direct_hoc_gpu ................................ Passed 39.52 sec | |
| Start 45: coreneuron_modtests::test_watchrange_py_gpu | |
| 119/183 Test #42: coreneuron_modtests::test_units_py_gpu ............................. Passed 36.34 sec | |
| Start 46: coreneuron_modtests::test_psolve_py_gpu | |
| 120/183 Test #38: coreneuron_modtests::spikes_py_gpu ................................. Passed 37.22 sec | |
| Start 47: coreneuron_modtests::test_ba_py_gpu | |
| 121/183 Test #39: coreneuron_modtests::spikes_file_mode_py_gpu ....................... Passed 37.15 sec | |
| Start 48: coreneuron_modtests::test_natrans_py_gpu | |
| 122/183 Test #41: coreneuron_modtests::datareturn_py_gpu ............................. Passed 37.04 sec | |
| Start 52: modlunit_unitstest | |
| 123/183 Test #52: modlunit_unitstest ................................................. Passed 0.02 sec | |
| Start 53: modlunit_hh | |
| 124/183 Test #53: modlunit_hh ........................................................ Passed 0.03 sec | |
| Start 54: modlunit_stim | |
| 125/183 Test #54: modlunit_stim ...................................................... Passed 0.01 sec | |
| Start 55: modlunit_pattern | |
| 126/183 Test #55: modlunit_pattern ................................................... Passed 0.01 sec | |
| Start 56: external_nrntest | |
| 127/183 Test #43: coreneuron_modtests::test_netmove_py_gpu ........................... Passed 36.01 sec | |
| Start 83: testcorenrn_bbcore::compare_results | |
| 128/183 Test #83: testcorenrn_bbcore::compare_results ................................ Passed 0.06 sec | |
| Start 93: testcorenrn_conc::compare_results | |
| 129/183 Test #93: testcorenrn_conc::compare_results .................................. Passed 0.05 sec | |
| Start 103: testcorenrn_deriv::compare_results | |
| 130/183 Test #103: testcorenrn_deriv::compare_results ................................. Passed 0.06 sec | |
| Start 113: testcorenrn_gf::compare_results | |
| 131/183 Test #113: testcorenrn_gf::compare_results .................................... Passed 0.06 sec | |
| Start 123: testcorenrn_kin::compare_results | |
| 132/183 Test #123: testcorenrn_kin::compare_results ................................... Passed 0.06 sec | |
| Start 131: testcorenrn_patstim::compare_results | |
| 133/183 Test #131: testcorenrn_patstim::compare_results ............................... Passed 0.06 sec | |
| Start 141: testcorenrn_vecplay::compare_results | |
| 134/183 Test #141: testcorenrn_vecplay::compare_results ............................... Passed 0.06 sec | |
| Start 170: channel_benchmark_hippo::compare_results | |
| 135/183 Test #170: channel_benchmark_hippo::compare_results ........................... Passed 0.06 sec | |
| Start 176: channel_benchmark_sscx::compare_results | |
| 136/183 Test #176: channel_benchmark_sscx::compare_results ............................ Passed 0.06 sec | |
| 137/183 Test #153: testcorenrn_watch::coreneuron_gpu_online ........................... Passed 38.28 sec | |
| Start 158: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate | |
| 138/183 Test #45: coreneuron_modtests::test_watchrange_py_gpu ........................ Passed 28.78 sec | |
| Start 159: testcorenrn_watch::coreneuron_cpu_offline | |
| 139/183 Test #155: testcorenrn_watch::coreneuron_gpu_offline .......................... Passed 38.81 sec | |
| Start 162: testcorenrn_netstimdirect::direct_netstimdirect | |
| 140/183 Test #157: testcorenrn_watch::coreneuron_cpu_online ........................... Passed 33.72 sec | |
| Start 163: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate | |
| 141/183 Test #154: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate .......... Passed 47.73 sec | |
| Start 32: coreneuron_modtests::spikes_mpi_py_cpu | |
| 142/183 Test #46: coreneuron_modtests::test_psolve_py_gpu ............................ Passed 37.56 sec | |
| 143/183 Test #47: coreneuron_modtests::test_ba_py_gpu ................................ Passed 37.38 sec | |
| Start 33: coreneuron_modtests::spikes_mpi_file_mode_py_cpu | |
| 144/183 Test #48: coreneuron_modtests::test_natrans_py_gpu ........................... Passed 37.42 sec | |
| 145/183 Test #158: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate .......... Passed 35.15 sec | |
| Start 34: coreneuron_modtests::inputpresyn_py_cpu | |
| 146/183 Test #159: testcorenrn_watch::coreneuron_cpu_offline .......................... Passed 40.79 sec | |
| Start 49: coreneuron_modtests::spikes_mpi_py_gpu | |
| Start 161: testcorenrn_watch::compare_results | |
| 147/183 Test #161: testcorenrn_watch::compare_results ................................. Passed 0.22 sec | |
| 148/183 Test #162: testcorenrn_netstimdirect::direct_netstimdirect .................... Passed 40.92 sec | |
| Start 50: coreneuron_modtests::spikes_mpi_file_mode_py_gpu | |
| 149/183 Test #163: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ... Passed 43.92 sec | |
| Start 51: coreneuron_modtests::inputpresyn_py_gpu | |
| Start 164: testcorenrn_netstimdirect::compare_results | |
| 150/183 Test #32: coreneuron_modtests::spikes_mpi_py_cpu ............................. Passed 43.68 sec | |
| 151/183 Test #164: testcorenrn_netstimdirect::compare_results ......................... Passed 1.16 sec | |
| 152/183 Test #33: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ................... Passed 32.89 sec | |
| Start 146: testcorenrn_vecevent::coreneuron_gpu_offline::preparation | |
| 153/183 Test #146: testcorenrn_vecevent::coreneuron_gpu_offline::preparation .......... Passed 6.30 sec | |
| Start 150: testcorenrn_vecevent::coreneuron_cpu_offline::preparation | |
| 154/183 Test #34: coreneuron_modtests::inputpresyn_py_cpu ............................ Passed 35.30 sec | |
| 155/183 Test #150: testcorenrn_vecevent::coreneuron_cpu_offline::preparation .......... Passed 2.44 sec | |
| Start 178: olfactory-bulb-3d::neuron::preparation | |
| 156/183 Test #178: olfactory-bulb-3d::neuron::preparation ............................. Passed 0.02 sec | |
| Start 180: olfactory-bulb-3d::coreneuron_gpu_online::preparation | |
| 157/183 Test #180: olfactory-bulb-3d::coreneuron_gpu_online::preparation .............. Passed 0.01 sec | |
| Start 182: olfactory-bulb-3d::coreneuron_cpu_online::preparation | |
| 158/183 Test #182: olfactory-bulb-3d::coreneuron_cpu_online::preparation .............. Passed 1.21 sec | |
| Start 57: reduced_dentate::neuron | |
| 159/183 Test #49: coreneuron_modtests::spikes_mpi_py_gpu ............................. Passed 28.31 sec | |
| Start 58: reduced_dentate::coreneuron_cpu | |
| 160/183 Test #51: coreneuron_modtests::inputpresyn_py_gpu ............................ Passed 26.51 sec | |
| 161/183 Test #50: coreneuron_modtests::spikes_mpi_file_mode_py_gpu ................... Passed 30.21 sec | |
| Start 59: reduced_dentate::coreneuron_gpu | |
| 162/183 Test #57: reduced_dentate::neuron ............................................ Passed 52.83 sec | |
| Start 142: testcorenrn_vecevent::neuron | |
| 163/183 Test #56: external_nrntest ................................................... Passed 132.99 sec | |
| 164/183 Test #27: coreneuron_modtests::test_pointer_py_cpu ........................... Passed 222.40 sec | |
| 165/183 Test #142: testcorenrn_vecevent::neuron ....................................... Passed 1.79 sec | |
| Start 67: external_ringtest::coreneuron_cpu_mpi_threads | |
| 166/183 Test #58: reduced_dentate::coreneuron_cpu .................................... Passed 55.51 sec | |
| Start 143: testcorenrn_vecevent::coreneuron_gpu_online | |
| 167/183 Test #59: reduced_dentate::coreneuron_gpu .................................... Passed 59.79 sec | |
| Start 144: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate | |
| Start 60: reduced_dentate::compare_results | |
| 168/183 Test #60: reduced_dentate::compare_results ................................... Passed 0.06 sec | |
| 169/183 Test #44: coreneuron_modtests::test_pointer_py_gpu ........................... Passed 184.06 sec | |
| 170/183 Test #67: external_ringtest::coreneuron_cpu_mpi_threads ...................... Passed 26.63 sec | |
| Start 72: external_ringtest::coreneuron_gpu_mpi_threads | |
| 171/183 Test #144: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate ....... Passed 25.23 sec | |
| Start 145: testcorenrn_vecevent::coreneuron_gpu_offline | |
| 172/183 Test #143: testcorenrn_vecevent::coreneuron_gpu_online ........................ Passed 51.67 sec | |
| Start 147: testcorenrn_vecevent::coreneuron_cpu_online | |
| 173/183 Test #145: testcorenrn_vecevent::coreneuron_gpu_offline ....................... Passed 21.37 sec | |
| Start 148: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate | |
| 174/183 Test #147: testcorenrn_vecevent::coreneuron_cpu_online ........................ Passed 6.56 sec | |
| Start 149: testcorenrn_vecevent::coreneuron_cpu_offline | |
| 175/183 Test #148: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ....... Passed 17.06 sec | |
| Start 177: olfactory-bulb-3d::neuron | |
| 176/183 Test #149: testcorenrn_vecevent::coreneuron_cpu_offline ....................... Passed 24.00 sec | |
| Start 179: olfactory-bulb-3d::coreneuron_gpu_online | |
| Start 151: testcorenrn_vecevent::compare_results | |
| 177/183 Test #151: testcorenrn_vecevent::compare_results .............................. Passed 0.16 sec | |
| 178/183 Test #72: external_ringtest::coreneuron_gpu_mpi_threads ...................... Passed 87.88 sec | |
| Start 181: olfactory-bulb-3d::coreneuron_cpu_online | |
| Start 73: external_ringtest::compare_results | |
| 179/183 Test #73: external_ringtest::compare_results ................................. Passed 0.35 sec | |
| 180/183 Test #177: olfactory-bulb-3d::neuron .......................................... Passed 191.70 sec | |
| 181/183 Test #179: olfactory-bulb-3d::coreneuron_gpu_online ........................... Passed 188.99 sec | |
| 182/183 Test #181: olfactory-bulb-3d::coreneuron_cpu_online ........................... Passed 169.92 sec | |
| Start 183: olfactory-bulb-3d::compare_results | |
| 183/183 Test #183: olfactory-bulb-3d::compare_results ................................. Passed 0.23 sec | |
| 100% tests passed, 0 tests failed out of 183 | |
| Total Test time (real) = 946.26 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1649846824:step_script [0Ksection_start:1649846824:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=10964 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=211037 responseStatus[0;m=201 Created token[0;m=6tft7wEv | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=11018 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=211037 responseStatus[0;m=201 Created token[0;m=6tft7wEv | |
| section_end:1649846825:upload_artifacts_on_success [0Ksection_start:1649846825:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1649846826:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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