Created
October 14, 2021 00:38
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Logfiles for GitLab pipeline https://bbpgitlab.epfl.ch/hpc/coreneuron/-/pipelines/19887 (:white_check_mark:) running on GitHub PR BlueBrain/CoreNeuron#634.
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1634168966:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1634168966:resolve_secrets [0Ksection_start:1634168966:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor753433226, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 19887, build ref 2ffcc0bd233954f136c937baf23e9593a0be0e8a, job ID 72837 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887 | |
| A slurm job will be created with name GL_J72837_PROD_P112_CP2_C9 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job eligible for phase1 and phase2, setting partition=prod_p2,prod_p1 | |
| Submitted batch job 2782624 | |
| job state: R | |
| section_end:1634169026:prepare_executor [0Ksection_start:1634169026:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r4i1n18 via bbpv1.epfl.ch... | |
| section_end:1634169030:prepare_script [0Ksection_start:1634169030:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1634169030:get_sources [0Ksection_start:1634169030:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for coreneuron-nvhpc-5...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=246674 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading cache.zip from https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/coreneuron-nvhpc-5[0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1634169046:restore_cache [0Ksection_start:1634169046:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for spack_setup (72831)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=246759 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=72831 responseStatus[0;m=200 OK token[0;m=wyjcSmWr | |
| section_end:1634169046:download_artifacts [0Ksection_start:1634169046:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_CONFIG}[0;m | |
| [32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72837/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72837/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72837/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:69 - $tempdir/$user/spack-stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 - ~/.spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 # - $spack/var/spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 # Directory in which to run tests and store test results. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 # Tests will be stored in directories named by date/time and package | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72837/spack-config/config.yaml:4 # name/hash. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:2 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72837/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:3 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:20 all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:5 root: $spack/opt/spack | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:6 build_jobs: 36 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:33 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:33 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:34 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:38 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:39 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:40 # Locations where different types of modules should be installed. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:76 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:85 tcl: $spack/share/spack/modules | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:91 lmod: $spack/share/spack/lmod | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:96 test_stage: ~/.spack/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:104 misc_cache: ~/.spack/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:110 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:115 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:120 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:128 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:137 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:163 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:170 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:178 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:184 concretizer: original | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:189 db_lock_timeout: 300 | |
| _builtin package_lock_timeout: !!null 'None' | |
| [32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = [email protected]:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = [email protected]: | |
| [32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m | |
| [32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m | |
| [32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m | |
| [32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m | |
| [32;1m$ echo New ref for ${SPACK_PACKAGE} is ${PACKAGE_REF}[0;m | |
| New ref for coreneuron is commit="2ffcc0bd233954f136c937baf23e9593a0be0e8a" | |
| [32;1m$ sed -i -e "/^\s*version\s*(\s*\(['\"]\)develop\1/ { s/,\s*\(commit\|tag\|branch\)=\([\"']\)[^\"']\+\2//g; s#)#, ${PACKAGE_REF})#; }" "${SPACK_PACKAGE_FILE}"[0;m | |
| [32;1m$ (cd $(dirname "${SPACK_PACKAGE_FILE}") && git diff "${SPACK_PACKAGE_FILE}")[0;m | |
| diff --git a/var/spack/repos/builtin/packages/coreneuron/package.py b/var/spack/repos/builtin/packages/coreneuron/package.py | |
| index f138183..fb8b49b 100644 | |
| --- a/var/spack/repos/builtin/packages/coreneuron/package.py | |
| +++ b/var/spack/repos/builtin/packages/coreneuron/package.py | |
| @@ -18,7 +18,7 @@ class Coreneuron(CMakePackage): | |
| url = "https://github.com/BlueBrain/CoreNeuron" | |
| git = "https://github.com/BlueBrain/CoreNeuron" | |
| - version('develop', branch='master') | |
| + version('develop', commit="2ffcc0bd233954f136c937baf23e9593a0be0e8a") | |
| # 1.0.1 > 1.0.0.20210519 > 1.0 as far as Spack is concerned | |
| version('1.0.0.20211012', commit='846b3a6') | |
| version('1.0.0.20210708', commit='d54a3aa') | |
| [32;1m$ fi[0;m | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron@develop%nvhpc+gpu+tests~legacy-unit~report build_type=RelWithDebInfo | |
| [32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be ekzdtgq26p6y5mzmpphbjqbifw32enfk | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=${SPACK_STAGE_DIR}[0;m | |
| [32;1m$ export CCACHE_DIR=${CI_PROJECT_DIR}/ccache[0;m | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ mkdir -p ${CCACHE_BASEDIR}[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887/72837/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887/72837/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Thu Oct 14 01:50:58 2021 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.32 / 0.51 (63.47 %) | |
| Files: 13239 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git gcc[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'ekzdtgq26p6y5mzmpphbjqbifw32enfk' | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron@develop%nvhpc+gpu~legacy-unit~report+tests build_type=RelWithDebInfo | |
| Concretized | |
| -------------------------------- | |
| - ekzdtgq coreneuron@develop%[email protected]~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl~openmp~profile~report+shared~sympy~sympyopt+tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| - 2ifshpf ^[email protected]%[email protected] patches=ad81ef1b088459a396d908295afc3809f9a25076efaa459cdd2f21eabd1f4b16 arch=linux-rhel7-x86_64 | |
| [^] qu3qasv ^[email protected]%[email protected]+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556,d56f31f2a3956630e5372b987d39cb79b5d2c71760fa150b8eb4a3f1a07e2658 visibility=hidden arch=linux-rhel7-x86_64 | |
| - gluy7kg ^[email protected]%[email protected]~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64 | |
| [^] 4phgvnp ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - prwvb2t ^[email protected]%[email protected]+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64 | |
| [^] jop6mvp ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - mddtpd5 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] v5gxu5s ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_JOB_CPUS_PER_NODE} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m | |
| ==> [email protected] : has external module in ['bison/3.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-2ifshpf6x23hf7ccztxnrrqdx4mxt3rj) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k (external boost-1.73.0-qu3qasvmolllw4vbcf2maq2dz3hklz2r) | |
| ==> [email protected] : has external module in ['cmake/3.15.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-gluy7kgf2wgh5bfrenva7x4mtnzhr6r4) | |
| ==> [email protected] : has external module in ['cuda/11.0.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cuda-11.0.2-kb4wci (external cuda-11.0.2-4phgvnpeha2grh36f6f6w7ledwlpbcs3) | |
| ==> [email protected] : has external module in ['flex/2.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-prwvb2t3p3bo5eivmcrvx2eyffvcwfqy) | |
| ==> [email protected] : has external module in ['hpe-mpi/2.22.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.22.hmpt-r52ypu (external hpe-mpi-2.22.hmpt-jop6mvp4dll4wazl3uc7ycyupteb34ia) | |
| ==> [email protected] : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-mddtpd5kgds34dklkfm2prewsfy6becf) | |
| ==> [email protected] : has external module in ['python/3.8.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-v5gxu5slpix24wzbfiyzo52rwso5gsaa) | |
| ==> Installing coreneuron-develop-ekzdtgq26p6y5mzmpphbjqbifw32enfk | |
| ==> No binary for coreneuron-develop-ekzdtgq26p6y5mzmpphbjqbifw32enfk found: installing from source | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.2/coreneuron-develop-ekzdtg | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887/72837/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887/72837/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Thu Oct 14 01:54:14 2021 | |
| Hits: 94 / 117 (80.34 %) | |
| Direct: 76 / 117 (64.96 %) | |
| Preprocessed: 18 / 41 (43.90 %) | |
| Misses: 23 | |
| Direct: 41 | |
| Preprocessed: 23 | |
| Uncacheable: 18 | |
| Primary storage: | |
| Hits: 204 / 234 (87.18 %) | |
| Misses: 30 | |
| Cache size (GB): 0.33 / 0.51 (64.48 %) | |
| Files: 13268 | |
| Uncacheable: | |
| Called for linking: 15 | |
| No input file: 3 | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES=^/${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.8.3 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-numpy/1.19.4 | |
| Autoloading py-mpi4py/3.0.3 | |
| Autoloading hpe-mpi/2.22.hmpt | |
| Autoloading py-h5py/3.1.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m | |
| Returning the number of failed builds, 0 | |
| [32;1m$ exit ${num_failures}[0;m | |
| section_end:1634169255:step_script [0Ksection_start:1634169255:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache coreneuron-nvhpc-5...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=254529 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache/: found 13829 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/coreneuron-nvhpc-5[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1634169275:archive_cache [0Ksection_start:1634169275:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=255281 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=72837 responseStatus[0;m=201 Created token[0;m=6FW_Cmzk | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=255310 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=72837 responseStatus[0;m=201 Created token[0;m=6FW_Cmzk | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=255337 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=72837 responseStatus[0;m=201 Created token[0;m=6FW_Cmzk | |
| section_end:1634169276:upload_artifacts_on_success [0Ksection_start:1634169276:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1634169276:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1634168774:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1634168774:resolve_secrets [0Ksection_start:1634168774:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor474007764, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 19887, build ref 2ffcc0bd233954f136c937baf23e9593a0be0e8a, job ID 72835 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887 | |
| A slurm job will be created with name GL_J72835_PROD_P112_CP2_C9 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job eligible for phase1 and phase2, setting partition=prod_p2,prod_p1 | |
| Submitted batch job 2782621 | |
| job state: R | |
| section_end:1634168787:prepare_executor [0Ksection_start:1634168787:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r4i1n18 via bbpv1.epfl.ch... | |
| section_end:1634168790:prepare_script [0Ksection_start:1634168790:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1634168791:get_sources [0Ksection_start:1634168791:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for coreneuron-intel-5...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=237838 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading cache.zip from https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/coreneuron-intel-5[0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1634168804:restore_cache [0Ksection_start:1634168804:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for spack_setup (72831)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=238774 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=72831 responseStatus[0;m=200 OK token[0;m=wyjcSmWr | |
| section_end:1634168805:download_artifacts [0Ksection_start:1634168805:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_CONFIG}[0;m | |
| [32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72835/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72835/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72835/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:69 - $tempdir/$user/spack-stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 - ~/.spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 # - $spack/var/spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 # Directory in which to run tests and store test results. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 # Tests will be stored in directories named by date/time and package | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72835/spack-config/config.yaml:4 # name/hash. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:2 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72835/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:3 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:20 all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:5 root: $spack/opt/spack | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:6 build_jobs: 36 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:33 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:33 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:34 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:38 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:39 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:40 # Locations where different types of modules should be installed. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:76 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:85 tcl: $spack/share/spack/modules | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:91 lmod: $spack/share/spack/lmod | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:96 test_stage: ~/.spack/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:104 misc_cache: ~/.spack/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:110 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:115 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:120 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:128 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:137 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:163 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:170 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:178 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:184 concretizer: original | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:189 db_lock_timeout: 300 | |
| _builtin package_lock_timeout: !!null 'None' | |
| [32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = [email protected]:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = [email protected]: | |
| [32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m | |
| [32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m | |
| [32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m | |
| [32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m | |
| [32;1m$ echo New ref for ${SPACK_PACKAGE} is ${PACKAGE_REF}[0;m | |
| New ref for coreneuron is commit="2ffcc0bd233954f136c937baf23e9593a0be0e8a" | |
| [32;1m$ sed -i -e "/^\s*version\s*(\s*\(['\"]\)develop\1/ { s/,\s*\(commit\|tag\|branch\)=\([\"']\)[^\"']\+\2//g; s#)#, ${PACKAGE_REF})#; }" "${SPACK_PACKAGE_FILE}"[0;m | |
| [32;1m$ (cd $(dirname "${SPACK_PACKAGE_FILE}") && git diff "${SPACK_PACKAGE_FILE}")[0;m | |
| diff --git a/var/spack/repos/builtin/packages/coreneuron/package.py b/var/spack/repos/builtin/packages/coreneuron/package.py | |
| index f138183..fb8b49b 100644 | |
| --- a/var/spack/repos/builtin/packages/coreneuron/package.py | |
| +++ b/var/spack/repos/builtin/packages/coreneuron/package.py | |
| @@ -18,7 +18,7 @@ class Coreneuron(CMakePackage): | |
| url = "https://github.com/BlueBrain/CoreNeuron" | |
| git = "https://github.com/BlueBrain/CoreNeuron" | |
| - version('develop', branch='master') | |
| + version('develop', commit="2ffcc0bd233954f136c937baf23e9593a0be0e8a") | |
| # 1.0.1 > 1.0.0.20210519 > 1.0 as far as Spack is concerned | |
| version('1.0.0.20211012', commit='846b3a6') | |
| version('1.0.0.20210708', commit='d54a3aa') | |
| [32;1m$ fi[0;m | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron@develop%intel+tests~legacy-unit build_type=Debug | |
| [32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be amiea4vkblpwhetoty6thfkfrdug4p64 | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=${SPACK_STAGE_DIR}[0;m | |
| [32;1m$ export CCACHE_DIR=${CI_PROJECT_DIR}/ccache[0;m | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ mkdir -p ${CCACHE_BASEDIR}[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887/72835/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887/72835/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Thu Oct 14 01:47:37 2021 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.38 / 0.51 (74.53 %) | |
| Files: 7504 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git gcc[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'amiea4vkblpwhetoty6thfkfrdug4p64' | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron@develop%intel~legacy-unit+tests build_type=Debug | |
| Concretized | |
| -------------------------------- | |
| - amiea4v coreneuron@develop%[email protected]~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl~openmp~profile+report+shared~sympy~sympyopt+tests build_type=Debug arch=linux-rhel7-x86_64 | |
| - ymcya3l ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] pvpzjkl ^[email protected]%[email protected]+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556 visibility=hidden arch=linux-rhel7-x86_64 | |
| - mxqypex ^[email protected]%[email protected]~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64 | |
| - 5mabxtb ^[email protected]%[email protected]+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64 | |
| [^] qagbv7u ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] kjhqfqv ^[email protected]%[email protected]~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] 2yojmmk ^[email protected]%[email protected]+cxx~debug~fortran+hl~java+mpi+pic+shared~szip~threadsafe api=none arch=linux-rhel7-x86_64 | |
| [^] wjshhip ^[email protected]%[email protected]+optimize+pic+shared arch=linux-rhel7-x86_64 | |
| [^] gwht6mm ^[email protected]%[email protected]~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| - nayogh4 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] icfhbit ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] zas5d2a ^[email protected]%[email protected]~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_JOB_CPUS_PER_NODE} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m | |
| ==> [email protected] : has external module in ['bison/3.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-ymcya3lbfxylkvsbomj2rbzbvecsldu2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k (external boost-1.73.0-pvpzjklfqyl55rerdxp63j32kpqkfr4z) | |
| ==> [email protected] : has external module in ['cmake/3.15.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-mxqypexiy6wmh4hpnmf4lbwwwqhxzscg) | |
| ==> [email protected] : has external module in ['flex/2.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-5mabxtbvp5xw7gfjcac32iffw27sdssk) | |
| ==> [email protected] : has external module in ['hpe-mpi/2.22.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.22.hmpt-r52ypu (external hpe-mpi-2.22.hmpt-qagbv7uwlmxlmpab4m3ullbu7fxvkkpa) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/zlib-1.2.11-uubmvo (external zlib-1.2.11-wjshhipoj5m66agnke3p2dsjf32qntuf) | |
| ==> [email protected] : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-nayogh4gvnag7ybxc2ud5dt4ckxod3cc) | |
| ==> [email protected] : has external module in ['python/3.8.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-icfhbitmltpoj6w6vghr23ac5erldiic) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/spdlog-1.8.1-gwht6m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/reportinglib-2.5.6-zas5d2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/hdf5-1.10.7-2yojmm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libsonata-report-1.0.0.20211007-kjhqfq | |
| ==> Installing coreneuron-develop-amiea4vkblpwhetoty6thfkfrdug4p64 | |
| ==> No binary for coreneuron-develop-amiea4vkblpwhetoty6thfkfrdug4p64 found: installing from source | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/coreneuron-develop-amiea4 | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887/72835/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887/72835/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Thu Oct 14 01:49:04 2021 | |
| Hits: 88 / 117 (75.21 %) | |
| Direct: 72 / 118 (61.02 %) | |
| Preprocessed: 16 / 46 (34.78 %) | |
| Misses: 29 | |
| Direct: 46 | |
| Preprocessed: 30 | |
| Uncacheable: 20 | |
| Primary storage: | |
| Hits: 192 / 236 (81.36 %) | |
| Misses: 44 | |
| Cache size (GB): 0.39 / 0.51 (76.67 %) | |
| Files: 7545 | |
| Uncacheable: | |
| Called for linking: 16 | |
| Compiler produced no output: 1 | |
| No input file: 3 | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES=^/${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.8.3 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-numpy/1.19.4 | |
| Autoloading py-mpi4py/3.0.3 | |
| Autoloading hpe-mpi/2.22.hmpt | |
| Autoloading py-h5py/3.1.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m | |
| Returning the number of failed builds, 0 | |
| [32;1m$ exit ${num_failures}[0;m | |
| section_end:1634168946:step_script [0Ksection_start:1634168946:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache coreneuron-intel-5...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=243972 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache/: found 8106 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/coreneuron-intel-5[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1634168964:archive_cache [0Ksection_start:1634168964:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=244824 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=72835 responseStatus[0;m=201 Created token[0;m=hDnkRZi_ | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=244846 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=72835 responseStatus[0;m=201 Created token[0;m=hDnkRZi_ | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=244870 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=72835 responseStatus[0;m=201 Created token[0;m=hDnkRZi_ | |
| section_end:1634168965:upload_artifacts_on_success [0Ksection_start:1634168965:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1634168966:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1634168969:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1634168969:resolve_secrets [0Ksection_start:1634168969:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor363127611, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 19887, build ref 2ffcc0bd233954f136c937baf23e9593a0be0e8a, job ID 72836 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887 | |
| A slurm job will be created with name GL_J72836_PROD_P112_CP1_C1 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job eligible for phase1 and phase2, setting partition=prod_p2,prod_p1 | |
| Submitted batch job 2782623 | |
| job state: R | |
| section_end:1634169026:prepare_executor [0Ksection_start:1634169026:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r4i1n18 via bbpv1.epfl.ch... | |
| section_end:1634169030:prepare_script [0Ksection_start:1634169030:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1634169030:get_sources [0Ksection_start:1634169030:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for coreneuron-nvhpc-5...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=246700 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading cache.zip from https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/coreneuron-nvhpc-5[0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1634169046:restore_cache [0Ksection_start:1634169046:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:nmodl:gpu (72833)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=246922 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=72833 responseStatus[0;m=200 OK token[0;m=ASv1jjao | |
| section_end:1634169047:download_artifacts [0Ksection_start:1634169047:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_CONFIG}[0;m | |
| [32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72836/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72836/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72836/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:69 - $tempdir/$user/spack-stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 - ~/.spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 # - $spack/var/spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 # Directory in which to run tests and store test results. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 # Tests will be stored in directories named by date/time and package | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72836/spack-config/config.yaml:4 # name/hash. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:2 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72836/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:3 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:20 all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:5 root: $spack/opt/spack | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:6 build_jobs: 36 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:33 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:33 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:34 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:38 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:39 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:40 # Locations where different types of modules should be installed. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:76 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:85 tcl: $spack/share/spack/modules | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:91 lmod: $spack/share/spack/lmod | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:96 test_stage: ~/.spack/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:104 misc_cache: ~/.spack/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:110 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:115 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:120 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:128 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:137 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:163 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:170 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:178 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:184 concretizer: original | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:189 db_lock_timeout: 300 | |
| _builtin package_lock_timeout: !!null 'None' | |
| [32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = [email protected]:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = [email protected]: | |
| [32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m | |
| [32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m | |
| [32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m | |
| [32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m | |
| [32;1m$ echo New ref for ${SPACK_PACKAGE} is ${PACKAGE_REF}[0;m | |
| New ref for coreneuron is commit="2ffcc0bd233954f136c937baf23e9593a0be0e8a" | |
| [32;1m$ sed -i -e "/^\s*version\s*(\s*\(['\"]\)develop\1/ { s/,\s*\(commit\|tag\|branch\)=\([\"']\)[^\"']\+\2//g; s#)#, ${PACKAGE_REF})#; }" "${SPACK_PACKAGE_FILE}"[0;m | |
| [32;1m$ (cd $(dirname "${SPACK_PACKAGE_FILE}") && git diff "${SPACK_PACKAGE_FILE}")[0;m | |
| diff --git a/var/spack/repos/builtin/packages/coreneuron/package.py b/var/spack/repos/builtin/packages/coreneuron/package.py | |
| index f138183..fb8b49b 100644 | |
| --- a/var/spack/repos/builtin/packages/coreneuron/package.py | |
| +++ b/var/spack/repos/builtin/packages/coreneuron/package.py | |
| @@ -18,7 +18,7 @@ class Coreneuron(CMakePackage): | |
| url = "https://github.com/BlueBrain/CoreNeuron" | |
| git = "https://github.com/BlueBrain/CoreNeuron" | |
| - version('develop', branch='master') | |
| + version('develop', commit="2ffcc0bd233954f136c937baf23e9593a0be0e8a") | |
| # 1.0.1 > 1.0.0.20210519 > 1.0 as far as Spack is concerned | |
| version('1.0.0.20211012', commit='846b3a6') | |
| version('1.0.0.20210708', commit='d54a3aa') | |
| [32;1m$ fi[0;m | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron@develop%nvhpc+nmodl+gpu+tests~legacy-unit~report build_type=RelWithDebInfo ^/awi7vrm4eaiuzdafhedebwthgzxznx4j | |
| [32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m | |
| ==> Warning: Missing a source id for nmodl@develop | |
| [32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be aoe2ga6salt5qv6vqlldt23jmmxeb6d5 | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=${SPACK_STAGE_DIR}[0;m | |
| [32;1m$ export CCACHE_DIR=${CI_PROJECT_DIR}/ccache[0;m | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ mkdir -p ${CCACHE_BASEDIR}[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887/72836/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887/72836/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Thu Oct 14 01:50:57 2021 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.32 / 0.51 (63.47 %) | |
| Files: 13239 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git gcc[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'aoe2ga6salt5qv6vqlldt23jmmxeb6d5' | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron@develop%nvhpc+gpu~legacy-unit+nmodl~report+tests build_type=RelWithDebInfo | |
| [+] ^nmodl@develop%[email protected]~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected]+libyaml arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| Concretized | |
| -------------------------------- | |
| - aoe2ga6 coreneuron@develop%[email protected]~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile~report+shared~sympy~sympyopt+tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| - 2ifshpf ^[email protected]%[email protected] patches=ad81ef1b088459a396d908295afc3809f9a25076efaa459cdd2f21eabd1f4b16 arch=linux-rhel7-x86_64 | |
| [^] qu3qasv ^[email protected]%[email protected]+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556,d56f31f2a3956630e5372b987d39cb79b5d2c71760fa150b8eb4a3f1a07e2658 visibility=hidden arch=linux-rhel7-x86_64 | |
| - gluy7kg ^[email protected]%[email protected]~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64 | |
| [^] 4phgvnp ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - prwvb2t ^[email protected]%[email protected]+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64 | |
| [^] jop6mvp ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - mddtpd5 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] awi7vrm ^nmodl@develop%[email protected]~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] afnqqnp ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] xpep3yw ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ujf2qes ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] v5gxu5s ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] rsay7hd ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] 5pew2nu ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] 6leiazm ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] 373m5vr ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] hgzmzzz ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] 2p3niph ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] 444mrrp ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ux4mwzh ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] tbbefeg ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] qywkw4y ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] rdab26o ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] dszppxf ^[email protected]%[email protected]+libyaml arch=linux-rhel7-x86_64 | |
| [^] ggibzjm ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] lhwntcl ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] l3syz4z ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_JOB_CPUS_PER_NODE} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m | |
| ==> [email protected] : has external module in ['bison/3.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-2ifshpf6x23hf7ccztxnrrqdx4mxt3rj) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k (external boost-1.73.0-qu3qasvmolllw4vbcf2maq2dz3hklz2r) | |
| ==> [email protected] : has external module in ['cmake/3.15.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-gluy7kgf2wgh5bfrenva7x4mtnzhr6r4) | |
| ==> [email protected] : has external module in ['cuda/11.0.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cuda-11.0.2-kb4wci (external cuda-11.0.2-4phgvnpeha2grh36f6f6w7ledwlpbcs3) | |
| ==> [email protected] : has external module in ['flex/2.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-prwvb2t3p3bo5eivmcrvx2eyffvcwfqy) | |
| ==> [email protected] : has external module in ['hpe-mpi/2.22.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.22.hmpt-r52ypu (external hpe-mpi-2.22.hmpt-jop6mvp4dll4wazl3uc7ycyupteb34ia) | |
| ==> [email protected] : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-mddtpd5kgds34dklkfm2prewsfy6becf) | |
| ==> [email protected] : has external module in ['python/3.8.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-v5gxu5slpix24wzbfiyzo52rwso5gsaa) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/libyaml-0.2.4-ggibzj | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-wcwidth-0.1.7-rdab26 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-mpmath-1.1.0-l3syz4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-more-itertools-8.7.0-hgzmzz | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-markupsafe-1.1.1-5pew2n | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-setuptools-50.3.2-rsay7h | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-pytz-2020.1-ujf2qe | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-six-1.16.0-ux4mwz | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-attrs-20.3.0-373m5v | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-pyparsing-2.4.2-444mrr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-py-1.8.0-qywkw4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-pluggy-0.13.0-tbbefe | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-pyyaml-5.3.1-dszppx | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-sympy-1.4-lhwntc | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-babel-2.7.0-xpep3y | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-packaging-19.2-2p3nip | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-jinja2-2.10.3-afnqqn | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-pytest-5.3.4-6leiaz | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.2/nmodl-develop-awi7vr | |
| ==> Installing coreneuron-develop-aoe2ga6salt5qv6vqlldt23jmmxeb6d5 | |
| ==> No binary for coreneuron-develop-aoe2ga6salt5qv6vqlldt23jmmxeb6d5 found: installing from source | |
| ==> Warning: Missing a source id for nmodl@develop | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.2/coreneuron-develop-aoe2ga | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887/72836/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887/72836/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Thu Oct 14 01:57:30 2021 | |
| Hits: 65 / 95 (68.42 %) | |
| Direct: 1 / 95 (1.05 %) | |
| Preprocessed: 64 / 94 (68.09 %) | |
| Misses: 30 | |
| Direct: 94 | |
| Preprocessed: 30 | |
| Uncacheable: 15 | |
| Primary storage: | |
| Hits: 66 / 190 (34.74 %) | |
| Misses: 124 | |
| Cache size (GB): 0.33 / 0.51 (64.85 %) | |
| Files: 13362 | |
| Uncacheable: | |
| Called for linking: 12 | |
| No input file: 3 | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES=^/${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.8.3 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-numpy/1.19.4 | |
| Autoloading py-mpi4py/3.0.3 | |
| Autoloading hpe-mpi/2.22.hmpt | |
| Autoloading py-h5py/3.1.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m | |
| Returning the number of failed builds, 0 | |
| [32;1m$ exit ${num_failures}[0;m | |
| section_end:1634169451:step_script [0Ksection_start:1634169451:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache coreneuron-nvhpc-5...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=257850 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache/: found 13923 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/coreneuron-nvhpc-5[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1634169477:archive_cache [0Ksection_start:1634169477:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=258250 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=72836 responseStatus[0;m=201 Created token[0;m=smL3tKom | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=258278 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=72836 responseStatus[0;m=201 Created token[0;m=smL3tKom | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=258300 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=72836 responseStatus[0;m=201 Created token[0;m=smL3tKom | |
| section_end:1634169479:upload_artifacts_on_success [0Ksection_start:1634169479:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1634169479:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1634169166:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1634169166:resolve_secrets [0Ksection_start:1634169166:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor040686276, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 19887, build ref 2ffcc0bd233954f136c937baf23e9593a0be0e8a, job ID 72834 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887 | |
| A slurm job will be created with name GL_J72834_PROD_P112_CP0_C0 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job eligible for phase1 and phase2, setting partition=prod_p2,prod_p1 | |
| Submitted batch job 2782626 | |
| job state: R | |
| section_end:1634169193:prepare_executor [0Ksection_start:1634169193:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r4i1n18 via bbpv1.epfl.ch... | |
| section_end:1634169195:prepare_script [0Ksection_start:1634169195:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1634169196:get_sources [0Ksection_start:1634169196:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for coreneuron-intel-5...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=252990 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading cache.zip from https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/coreneuron-intel-5[0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1634169208:restore_cache [0Ksection_start:1634169208:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:nmodl:intel (72832)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=253137 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=72832 responseStatus[0;m=200 OK token[0;m=iz74H59e | |
| section_end:1634169209:download_artifacts [0Ksection_start:1634169209:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_CONFIG}[0;m | |
| [32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72834/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72834/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72834/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:69 - $tempdir/$user/spack-stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 - ~/.spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 # - $spack/var/spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 # Directory in which to run tests and store test results. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 # Tests will be stored in directories named by date/time and package | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72834/spack-config/config.yaml:4 # name/hash. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:2 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72834/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:3 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:20 all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:5 root: $spack/opt/spack | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:6 build_jobs: 36 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:33 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:33 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:34 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:38 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:39 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:40 # Locations where different types of modules should be installed. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:76 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:85 tcl: $spack/share/spack/modules | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:91 lmod: $spack/share/spack/lmod | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:96 test_stage: ~/.spack/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:104 misc_cache: ~/.spack/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:110 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:115 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:120 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:128 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:137 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:163 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:170 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:178 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:184 concretizer: original | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:189 db_lock_timeout: 300 | |
| _builtin package_lock_timeout: !!null 'None' | |
| [32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = [email protected]:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = [email protected]: | |
| [32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m | |
| [32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m | |
| [32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m | |
| [32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m | |
| [32;1m$ echo New ref for ${SPACK_PACKAGE} is ${PACKAGE_REF}[0;m | |
| New ref for coreneuron is commit="2ffcc0bd233954f136c937baf23e9593a0be0e8a" | |
| [32;1m$ sed -i -e "/^\s*version\s*(\s*\(['\"]\)develop\1/ { s/,\s*\(commit\|tag\|branch\)=\([\"']\)[^\"']\+\2//g; s#)#, ${PACKAGE_REF})#; }" "${SPACK_PACKAGE_FILE}"[0;m | |
| [32;1m$ (cd $(dirname "${SPACK_PACKAGE_FILE}") && git diff "${SPACK_PACKAGE_FILE}")[0;m | |
| diff --git a/var/spack/repos/builtin/packages/coreneuron/package.py b/var/spack/repos/builtin/packages/coreneuron/package.py | |
| index f138183..fb8b49b 100644 | |
| --- a/var/spack/repos/builtin/packages/coreneuron/package.py | |
| +++ b/var/spack/repos/builtin/packages/coreneuron/package.py | |
| @@ -18,7 +18,7 @@ class Coreneuron(CMakePackage): | |
| url = "https://github.com/BlueBrain/CoreNeuron" | |
| git = "https://github.com/BlueBrain/CoreNeuron" | |
| - version('develop', branch='master') | |
| + version('develop', commit="2ffcc0bd233954f136c937baf23e9593a0be0e8a") | |
| # 1.0.1 > 1.0.0.20210519 > 1.0 as far as Spack is concerned | |
| version('1.0.0.20211012', commit='846b3a6') | |
| version('1.0.0.20210708', commit='d54a3aa') | |
| [32;1m$ fi[0;m | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron@develop%intel+nmodl+tests~legacy-unit build_type=Debug ^/lqyttqytclxdwwickak7uvjmb6a3au3g | |
| [32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m | |
| ==> Warning: Missing a source id for nmodl@develop | |
| [32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be fbjlykb4ys6kgbq2z2zyrw6ufddzw3ts | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=${SPACK_STAGE_DIR}[0;m | |
| [32;1m$ export CCACHE_DIR=${CI_PROJECT_DIR}/ccache[0;m | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ mkdir -p ${CCACHE_BASEDIR}[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887/72834/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887/72834/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Thu Oct 14 01:53:44 2021 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.39 / 0.51 (76.67 %) | |
| Files: 7545 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git gcc[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'fbjlykb4ys6kgbq2z2zyrw6ufddzw3ts' | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron@develop%intel~legacy-unit+nmodl+tests build_type=Debug | |
| [+] ^nmodl@develop%[email protected]~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected]+libyaml arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| Concretized | |
| -------------------------------- | |
| - fbjlykb coreneuron@develop%[email protected]~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared~sympy~sympyopt+tests build_type=Debug arch=linux-rhel7-x86_64 | |
| - ymcya3l ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] pvpzjkl ^[email protected]%[email protected]+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556 visibility=hidden arch=linux-rhel7-x86_64 | |
| - mxqypex ^[email protected]%[email protected]~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64 | |
| - 5mabxtb ^[email protected]%[email protected]+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64 | |
| [^] qagbv7u ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] kjhqfqv ^[email protected]%[email protected]~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] 2yojmmk ^[email protected]%[email protected]+cxx~debug~fortran+hl~java+mpi+pic+shared~szip~threadsafe api=none arch=linux-rhel7-x86_64 | |
| [^] wjshhip ^[email protected]%[email protected]+optimize+pic+shared arch=linux-rhel7-x86_64 | |
| [^] gwht6mm ^[email protected]%[email protected]~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| - nayogh4 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] lqyttqy ^nmodl@develop%[email protected]~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] ubiktsv ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] yrbfda2 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] oe2c27i ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] icfhbit ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] xfgkmkd ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] oe2hrft ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] jo63uk3 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] kcyedyh ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] mikhjgq ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] hziuwhj ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] vpsqgcg ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] xgnwei3 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] gc3zsis ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] 557icag ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] za7jmvs ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] chpzzlm ^[email protected]%[email protected]+libyaml arch=linux-rhel7-x86_64 | |
| [^] 4237mpr ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] runxrmn ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] d6t5uhn ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] zas5d2a ^[email protected]%[email protected]~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_JOB_CPUS_PER_NODE} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m | |
| ==> [email protected] : has external module in ['bison/3.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-ymcya3lbfxylkvsbomj2rbzbvecsldu2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k (external boost-1.73.0-pvpzjklfqyl55rerdxp63j32kpqkfr4z) | |
| ==> [email protected] : has external module in ['cmake/3.15.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-mxqypexiy6wmh4hpnmf4lbwwwqhxzscg) | |
| ==> [email protected] : has external module in ['flex/2.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-5mabxtbvp5xw7gfjcac32iffw27sdssk) | |
| ==> [email protected] : has external module in ['hpe-mpi/2.22.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.22.hmpt-r52ypu (external hpe-mpi-2.22.hmpt-qagbv7uwlmxlmpab4m3ullbu7fxvkkpa) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/zlib-1.2.11-uubmvo (external zlib-1.2.11-wjshhipoj5m66agnke3p2dsjf32qntuf) | |
| ==> [email protected] : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-nayogh4gvnag7ybxc2ud5dt4ckxod3cc) | |
| ==> [email protected] : has external module in ['python/3.8.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-icfhbitmltpoj6w6vghr23ac5erldiic) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libyaml-0.2.4-4237mp | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/spdlog-1.8.1-gwht6m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/reportinglib-2.5.6-zas5d2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/hdf5-1.10.7-2yojmm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pytz-2020.1-oe2c27 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pluggy-0.13.0-gc3zsi | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-setuptools-50.3.2-xfgkmk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pyparsing-2.4.2-vpsqgc | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-mpmath-1.1.0-d6t5uh | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-wcwidth-0.1.7-za7jmv | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-markupsafe-1.1.1-oe2hrf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-six-1.16.0-xgnwei | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-py-1.8.0-557ica | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-more-itertools-8.7.0-mikhjg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-attrs-20.3.0-kcyedy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pyyaml-5.3.1-chpzzl | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libsonata-report-1.0.0.20211007-kjhqfq | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-babel-2.7.0-yrbfda | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-sympy-1.4-runxrm | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-packaging-19.2-hziuwh | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-jinja2-2.10.3-ubikts | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pytest-5.3.4-jo63uk | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/nmodl-develop-lqyttq | |
| ==> Installing coreneuron-develop-fbjlykb4ys6kgbq2z2zyrw6ufddzw3ts | |
| ==> No binary for coreneuron-develop-fbjlykb4ys6kgbq2z2zyrw6ufddzw3ts found: installing from source | |
| ==> Warning: Missing a source id for nmodl@develop | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/coreneuron-develop-fbjlyk | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887/72834/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887/72834/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Thu Oct 14 01:55:15 2021 | |
| Hits: 81 / 95 (85.26 %) | |
| Direct: 0 / 96 (0.00 %) | |
| Preprocessed: 81 / 96 (84.38 %) | |
| Misses: 14 | |
| Direct: 96 | |
| Preprocessed: 15 | |
| Uncacheable: 17 | |
| Primary storage: | |
| Hits: 81 / 192 (42.19 %) | |
| Misses: 111 | |
| Cache size (GB): 0.40 / 0.51 (77.19 %) | |
| Files: 7653 | |
| Uncacheable: | |
| Called for linking: 13 | |
| Compiler produced no output: 1 | |
| No input file: 3 | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES=^/${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.8.3 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-numpy/1.19.4 | |
| Autoloading py-mpi4py/3.0.3 | |
| Autoloading hpe-mpi/2.22.hmpt | |
| Autoloading py-h5py/3.1.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m | |
| Returning the number of failed builds, 0 | |
| [32;1m$ exit ${num_failures}[0;m | |
| section_end:1634169315:step_script [0Ksection_start:1634169316:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache coreneuron-intel-5...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=256200 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache/: found 8214 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/coreneuron-intel-5[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1634169337:archive_cache [0Ksection_start:1634169337:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=256414 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=72834 responseStatus[0;m=201 Created token[0;m=o4F-_51w | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=256437 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=72834 responseStatus[0;m=201 Created token[0;m=o4F-_51w | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=256461 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=72834 responseStatus[0;m=201 Created token[0;m=o4F-_51w | |
| section_end:1634169338:upload_artifacts_on_success [0Ksection_start:1634169338:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1634169338:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1634169900:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1634169900:resolve_secrets [0Ksection_start:1634169900:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor584954884, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 19887, build ref 2ffcc0bd233954f136c937baf23e9593a0be0e8a, job ID 72845 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887 | |
| A slurm job will be created with name GL_J72845_PROD_P112_CP2_C9 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job eligible for phase1 and phase2, setting partition=prod_p2,prod_p1 | |
| Submitted batch job 2782701 | |
| job state: R | |
| section_end:1634170023:prepare_executor [0Ksection_start:1634170023:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r4i1n18 via bbpv1.epfl.ch... | |
| section_end:1634170025:prepare_script [0Ksection_start:1634170025:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1634170025:get_sources [0Ksection_start:1634170025:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for neuron-nvhpc-5...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=292625 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1634170100:restore_cache [0Ksection_start:1634170100:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:gpu (72837)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=298230 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=72837 responseStatus[0;m=200 OK token[0;m=6FW_Cmzk | |
| section_end:1634170101:download_artifacts [0Ksection_start:1634170101:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES="${SPACK_PACKAGE_DEPENDENCIES}^py-cython%gcc^py-numpy%gcc"[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_CONFIG}[0;m | |
| [32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72845/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72845/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72845/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:69 - $tempdir/$user/spack-stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 - ~/.spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 # - $spack/var/spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 # Directory in which to run tests and store test results. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 # Tests will be stored in directories named by date/time and package | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72845/spack-config/config.yaml:4 # name/hash. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:2 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72845/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:3 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:20 all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:5 root: $spack/opt/spack | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:6 build_jobs: 36 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:33 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:33 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:34 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:38 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:39 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:40 # Locations where different types of modules should be installed. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:76 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:85 tcl: $spack/share/spack/modules | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:91 lmod: $spack/share/spack/lmod | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:96 test_stage: ~/.spack/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:104 misc_cache: ~/.spack/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:110 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:115 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:120 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:128 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:137 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:163 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:170 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:178 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:184 concretizer: original | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:189 db_lock_timeout: 300 | |
| _builtin package_lock_timeout: !!null 'None' | |
| [32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = [email protected]:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = [email protected]: | |
| [32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m | |
| [32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m | |
| [32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m | |
| [32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m | |
| [32;1m$ echo New ref for ${SPACK_PACKAGE} is ${PACKAGE_REF}[0;m | |
| New ref for neuron is branch="epic/gpu_wheel" | |
| [32;1m$ sed -i -e "/^\s*version\s*(\s*\(['\"]\)develop\1/ { s/,\s*\(commit\|tag\|branch\)=\([\"']\)[^\"']\+\2//g; s#)#, ${PACKAGE_REF})#; }" "${SPACK_PACKAGE_FILE}"[0;m | |
| [32;1m$ (cd $(dirname "${SPACK_PACKAGE_FILE}") && git diff "${SPACK_PACKAGE_FILE}")[0;m | |
| diff --git a/var/spack/repos/builtin/packages/neuron/package.py b/var/spack/repos/builtin/packages/neuron/package.py | |
| index 7c6cf75..389228e 100644 | |
| --- a/var/spack/repos/builtin/packages/neuron/package.py | |
| +++ b/var/spack/repos/builtin/packages/neuron/package.py | |
| @@ -31,7 +31,7 @@ class Neuron(CMakePackage): | |
| patch("apply_79a4d2af_load_balance_fix.patch", when="@7.8.0b") | |
| patch("fix_brew_py_18e97a2d.patch", when="@7.8.0c") | |
| - version("develop", branch="master") | |
| + version("develop", branch="epic/gpu_wheel") | |
| version("8.0.0", tag="8.0.0", preferred=True) | |
| version("8.0b", commit="eb8d038") | |
| version("8.0a", tag="8.0a") | |
| [32;1m$ fi[0;m | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron@develop%nvhpc+coreneuron+debug+tests~legacy-unit ^/ekzdtgq26p6y5mzmpphbjqbifw32enfk^py-cython%gcc^py-numpy%gcc | |
| [32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m | |
| ==> Warning: Missing a source id for neuron@develop | |
| [32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be qdta367h6ly225azfnup34o2tpbkhbcb | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=${SPACK_STAGE_DIR}[0;m | |
| [32;1m$ export CCACHE_DIR=${CI_PROJECT_DIR}/ccache[0;m | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ mkdir -p ${CCACHE_BASEDIR}[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887/72845/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887/72845/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Thu Oct 14 02:08:36 2021 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.50 / 0.51 (98.20 %) | |
| Files: 69853 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git gcc[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'qdta367h6ly225azfnup34o2tpbkhbcb' | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron@develop%nvhpc+coreneuron+debug~legacy-unit+tests | |
| [+] ^coreneuron@develop%[email protected]~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl~openmp~profile~report+shared~sympy~sympyopt+tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected]+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556,d56f31f2a3956630e5372b987d39cb79b5d2c71760fa150b8eb4a3f1a07e2658 visibility=hidden arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - ^py-cython%gcc | |
| - ^py-numpy%gcc | |
| Concretized | |
| -------------------------------- | |
| - qdta367 neuron@develop%[email protected]+binary+cmake~codechecks+coreneuron~cross-compile+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+multisend~profile+pysetup+python+rx3d+shared+tests build_type=RelWithDebInfo patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c arch=linux-rhel7-x86_64 | |
| - 2ifshpf ^[email protected]%[email protected] patches=ad81ef1b088459a396d908295afc3809f9a25076efaa459cdd2f21eabd1f4b16 arch=linux-rhel7-x86_64 | |
| - gluy7kg ^[email protected]%[email protected]~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64 | |
| [+] ekzdtgq ^coreneuron@develop%[email protected]~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl~openmp~profile~report+shared~sympy~sympyopt+tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] qu3qasv ^[email protected]%[email protected]+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556,d56f31f2a3956630e5372b987d39cb79b5d2c71760fa150b8eb4a3f1a07e2658 visibility=hidden arch=linux-rhel7-x86_64 | |
| [^] 4phgvnp ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] jop6mvp ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - prwvb2t ^[email protected]%[email protected]+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64 | |
| [^] 5lqiecm ^[email protected]%[email protected]+bzip2+curses+git~libunistring+libxml2+tar+xz patches=6e530daaae14725d578d6cafbf7d523accc9ed29fd817bd421cf98a5f51e9e1b,bbe9f0539aa504966ac104224d25a9260faa1015ed3adda936467be9c7de4eae,fb27a3fb5e414bdc50ffebbbe2da986473df70a493caa4396226f51a67c55424 arch=linux-rhel7-x86_64 | |
| [^] id52ywi ^[email protected]%[email protected]+shared arch=linux-rhel7-x86_64 | |
| [^] o2ibs4c ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] hbvd5d6 ^[email protected]%[email protected]~python patches=05ff238cf435825ef835c7ae39376b52dc83d8caf19e962f0766c841386a305a,10a88ad47f9797cf7cf2d7d07241f665a3b6d1f31fa026728c8c2ae93e1664e9 arch=linux-rhel7-x86_64 | |
| [^] nfl4mod ^[email protected]%[email protected] patches=6e94c68d45d4cb8148c8c53699921d10b13784f758f0563ce64c838e0ca48ceb arch=linux-rhel7-x86_64 | |
| [^] qd22znx ^[email protected]%[email protected]~pic arch=linux-rhel7-x86_64 | |
| [^] riwuxjc ^[email protected]%[email protected]+optimize+pic+shared arch=linux-rhel7-x86_64 | |
| [^] ijdcmaa ^[email protected]%[email protected]~symlinks+termlib arch=linux-rhel7-x86_64 | |
| [^] tvukhb5 ^[email protected]%[email protected] patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,4e8cdf69294c376c45c39d059f11769c5c996c2d84cdfb56eb69890e0aa4e991,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-x86_64 | |
| - mddtpd5 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] eg6a4hu ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] rsay7hd ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] v5gxu5s ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] i4mwhdw ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ottdmb2 ^[email protected]%[email protected]+blas+lapack arch=linux-rhel7-x86_64 | |
| [^] syahjjg ^[email protected]%[email protected]~ilp64+shared threads=none arch=linux-rhel7-x86_64 | |
| [^] 6leiazm ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] 373m5vr ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] hgzmzzz ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] 2p3niph ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] 444mrrp ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ux4mwzh ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] tbbefeg ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] zbwtznm ^[email protected]%[email protected]+toml arch=linux-rhel7-x86_64 | |
| [^] k3yba4y ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] qywkw4y ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] rdab26o ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] d32wle3 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] 2j2zh6h ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] pmg6zft ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_JOB_CPUS_PER_NODE} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m | |
| ==> [email protected] : has external module in ['bison/3.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-2ifshpf6x23hf7ccztxnrrqdx4mxt3rj) | |
| ==> [email protected] : has external module in ['cmake/3.15.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-gluy7kgf2wgh5bfrenva7x4mtnzhr6r4) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k (external boost-1.73.0-qu3qasvmolllw4vbcf2maq2dz3hklz2r) | |
| ==> [email protected] : has external module in ['cuda/11.0.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cuda-11.0.2-kb4wci (external cuda-11.0.2-4phgvnpeha2grh36f6f6w7ledwlpbcs3) | |
| ==> [email protected] : has external module in ['hpe-mpi/2.22.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.22.hmpt-r52ypu (external hpe-mpi-2.22.hmpt-jop6mvp4dll4wazl3uc7ycyupteb34ia) | |
| ==> [email protected] : has external module in ['flex/2.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-prwvb2t3p3bo5eivmcrvx2eyffvcwfqy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bzip2-1.0.8-vatuhz (external bzip2-1.0.8-id52ywihy7al2fabuv3lgb4rhoz2znfn) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/libiconv-1.16-o2ibs4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/pkgconf-1.7.3-nfl4mo | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/xz-5.2.5-qd22zn | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/zlib-1.2.11-uubmvo (external zlib-1.2.11-riwuxjcya5j363kxy7tgaac4r5qbijy7) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ncurses-6.2-xvsnay (external ncurses-6.2-ijdcmaauxxu3dblhx4qrqxsr5tmagbad) | |
| [+] /usr (external tar-1.28-tvukhb5y7rnjiw2clctp4ds3uyk4stlp) | |
| ==> [email protected] : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-mddtpd5kgds34dklkfm2prewsfy6becf) | |
| ==> [email protected] : has external module in ['python/3.8.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-v5gxu5slpix24wzbfiyzo52rwso5gsaa) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/intel-mkl-2018.3.222-xjuqsf (external intel-mkl-2018.3.222-syahjjgpawq4c4jicb753yciaowfyr75) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/readline-8.0-f2v4sr (external readline-8.0-pmg6zftwkbtasfhlfscbmkdurshjk773) | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.2/coreneuron-develop-ekzdtg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/libxml2-2.9.10-hbvd5d | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-six-1.16.0-ux4mwz | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-setuptools-50.3.2-rsay7h | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/gettext-0.21-5lqiec | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-pyparsing-2.4.2-444mrr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-toml-0.10.0-k3yba4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-more-itertools-8.7.0-hgzmzz | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-wcwidth-0.1.7-rdab26 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-mpi4py-3.0.3-i4mwhd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/py-cython-0.29.21-eg6a4h | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-coverage-5.3-2j2zh6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-attrs-20.3.0-373m5v | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-packaging-19.2-2p3nip | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-setuptools-scm-4.1.2-zbwtzn | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/py-numpy-1.19.4-ottdmb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-py-1.8.0-qywkw4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-pluggy-0.13.0-tbbefe | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-pytest-5.3.4-6leiaz | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-pytest-cov-2.8.1-d32wle | |
| ==> Installing neuron-develop-qdta367h6ly225azfnup34o2tpbkhbcb | |
| ==> No binary for neuron-develop-qdta367h6ly225azfnup34o2tpbkhbcb found: installing from source | |
| ==> Warning: Missing a source id for neuron@develop | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.2/neuron-develop-qdta36 | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887/72845/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887/72845/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Thu Oct 14 02:23:18 2021 | |
| Hits: 518 / 753 (68.79 %) | |
| Direct: 7 / 762 (0.92 %) | |
| Preprocessed: 511 / 749 (68.22 %) | |
| Misses: 235 | |
| Direct: 755 | |
| Preprocessed: 238 | |
| Uncacheable: 124 | |
| Primary storage: | |
| Hits: 540 / 1518 (35.57 %) | |
| Misses: 978 | |
| Cache size (GB): 0.50 / 0.51 (98.34 %) | |
| Files: 68954 | |
| Cleanups: 15 | |
| Uncacheable: | |
| Autoconf compile/link: 7 | |
| Called for linking: 101 | |
| Called for preprocessing: 1 | |
| Compilation failed: 3 | |
| No input file: 6 | |
| Preprocessing failed: 6 | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES=^/${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.8.3 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-numpy/1.19.4 | |
| Autoloading py-mpi4py/3.0.3 | |
| Autoloading hpe-mpi/2.22.hmpt | |
| Autoloading py-h5py/3.1.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m | |
| Returning the number of failed builds, 0 | |
| [32;1m$ exit ${num_failures}[0;m | |
| section_end:1634170998:step_script [0Ksection_start:1634170998:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache neuron-nvhpc-5...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=24753 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache/: found 69515 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/neuron-nvhpc-5[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1634171060:archive_cache [0Ksection_start:1634171060:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=26884 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=72845 responseStatus[0;m=201 Created token[0;m=wWGRZ-it | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=26911 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=72845 responseStatus[0;m=201 Created token[0;m=wWGRZ-it | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=26935 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=72845 responseStatus[0;m=201 Created token[0;m=wWGRZ-it | |
| section_end:1634171061:upload_artifacts_on_success [0Ksection_start:1634171061:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1634171062:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1634169277:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1634169277:resolve_secrets [0Ksection_start:1634169277:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor125757694, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 19887, build ref 2ffcc0bd233954f136c937baf23e9593a0be0e8a, job ID 72843 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887 | |
| A slurm job will be created with name GL_J72843_PROD_P112_CP2_C9 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job eligible for phase1 and phase2, setting partition=prod_p2,prod_p1 | |
| Submitted batch job 2782627 | |
| job state: R | |
| section_end:1634169318:prepare_executor [0Ksection_start:1634169318:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r4i1n18 via bbpv1.epfl.ch... | |
| section_end:1634169319:prepare_script [0Ksection_start:1634169319:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1634169320:get_sources [0Ksection_start:1634169320:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for neuron-intel-5...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=256334 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading cache.zip from https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/neuron-intel-5[0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1634169425:restore_cache [0Ksection_start:1634169425:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:intel (72835)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=256999 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=72835 responseStatus[0;m=200 OK token[0;m=hDnkRZi_ | |
| section_end:1634169426:download_artifacts [0Ksection_start:1634169426:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_CONFIG}[0;m | |
| [32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72843/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72843/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72843/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:69 - $tempdir/$user/spack-stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 - ~/.spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 # - $spack/var/spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 # Directory in which to run tests and store test results. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 # Tests will be stored in directories named by date/time and package | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72843/spack-config/config.yaml:4 # name/hash. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:2 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72843/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:3 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:20 all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:5 root: $spack/opt/spack | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:6 build_jobs: 36 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:33 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:33 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:34 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:38 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:39 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:40 # Locations where different types of modules should be installed. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:76 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:85 tcl: $spack/share/spack/modules | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:91 lmod: $spack/share/spack/lmod | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:96 test_stage: ~/.spack/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:104 misc_cache: ~/.spack/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:110 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:115 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:120 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:128 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:137 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:163 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:170 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:178 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:184 concretizer: original | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:189 db_lock_timeout: 300 | |
| _builtin package_lock_timeout: !!null 'None' | |
| [32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = [email protected]:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = [email protected]: | |
| [32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m | |
| [32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m | |
| [32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m | |
| [32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m | |
| [32;1m$ echo New ref for ${SPACK_PACKAGE} is ${PACKAGE_REF}[0;m | |
| New ref for neuron is branch="epic/gpu_wheel" | |
| [32;1m$ sed -i -e "/^\s*version\s*(\s*\(['\"]\)develop\1/ { s/,\s*\(commit\|tag\|branch\)=\([\"']\)[^\"']\+\2//g; s#)#, ${PACKAGE_REF})#; }" "${SPACK_PACKAGE_FILE}"[0;m | |
| [32;1m$ (cd $(dirname "${SPACK_PACKAGE_FILE}") && git diff "${SPACK_PACKAGE_FILE}")[0;m | |
| diff --git a/var/spack/repos/builtin/packages/neuron/package.py b/var/spack/repos/builtin/packages/neuron/package.py | |
| index 7c6cf75..389228e 100644 | |
| --- a/var/spack/repos/builtin/packages/neuron/package.py | |
| +++ b/var/spack/repos/builtin/packages/neuron/package.py | |
| @@ -31,7 +31,7 @@ class Neuron(CMakePackage): | |
| patch("apply_79a4d2af_load_balance_fix.patch", when="@7.8.0b") | |
| patch("fix_brew_py_18e97a2d.patch", when="@7.8.0c") | |
| - version("develop", branch="master") | |
| + version("develop", branch="epic/gpu_wheel") | |
| version("8.0.0", tag="8.0.0", preferred=True) | |
| version("8.0b", commit="eb8d038") | |
| version("8.0a", tag="8.0a") | |
| [32;1m$ fi[0;m | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron@develop%intel+coreneuron+debug+tests~legacy-unit ^/amiea4vkblpwhetoty6thfkfrdug4p64 | |
| [32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m | |
| ==> Warning: Missing a source id for neuron@develop | |
| [32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be l2cuclt2wvuiw4s54hywewweoywsqlpu | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=${SPACK_STAGE_DIR}[0;m | |
| [32;1m$ export CCACHE_DIR=${CI_PROJECT_DIR}/ccache[0;m | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ mkdir -p ${CCACHE_BASEDIR}[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887/72843/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887/72843/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Thu Oct 14 01:57:19 2021 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.49 / 0.51 (94.80 %) | |
| Files: 68045 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git gcc[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'l2cuclt2wvuiw4s54hywewweoywsqlpu' | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron@develop%intel+coreneuron+debug~legacy-unit+tests | |
| [+] ^coreneuron@develop%[email protected]~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl~openmp~profile+report+shared~sympy~sympyopt+tests build_type=Debug arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected]+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556 visibility=hidden arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected]~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected]+cxx~debug~fortran+hl~java+mpi+pic+shared~szip~threadsafe api=none arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected]+optimize+pic+shared arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected]~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected]~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| Concretized | |
| -------------------------------- | |
| - l2cuclt neuron@develop%[email protected]+binary+cmake~codechecks+coreneuron~cross-compile+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+multisend~profile+pysetup+python+rx3d+shared+tests build_type=RelWithDebInfo patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c arch=linux-rhel7-x86_64 | |
| - ymcya3l ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - mxqypex ^[email protected]%[email protected]~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64 | |
| [+] amiea4v ^coreneuron@develop%[email protected]~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl~openmp~profile+report+shared~sympy~sympyopt+tests build_type=Debug arch=linux-rhel7-x86_64 | |
| [^] pvpzjkl ^[email protected]%[email protected]+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556 visibility=hidden arch=linux-rhel7-x86_64 | |
| [^] qagbv7u ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] kjhqfqv ^[email protected]%[email protected]~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] 2yojmmk ^[email protected]%[email protected]+cxx~debug~fortran+hl~java+mpi+pic+shared~szip~threadsafe api=none arch=linux-rhel7-x86_64 | |
| [^] wjshhip ^[email protected]%[email protected]+optimize+pic+shared arch=linux-rhel7-x86_64 | |
| [^] gwht6mm ^[email protected]%[email protected]~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] zas5d2a ^[email protected]%[email protected]~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| - 5mabxtb ^[email protected]%[email protected]+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64 | |
| [^] 6vrzcuv ^[email protected]%[email protected]+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel7-x86_64 | |
| [^] 6zbb66a ^[email protected]%[email protected]+shared arch=linux-rhel7-x86_64 | |
| [^] qlmq4dv ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] 6lr2umn ^[email protected]%[email protected]~python arch=linux-rhel7-x86_64 | |
| [^] 2qyzkdl ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] wzx3yy4 ^[email protected]%[email protected]~pic arch=linux-rhel7-x86_64 | |
| [^] nedfnju ^[email protected]%[email protected]~symlinks+termlib arch=linux-rhel7-x86_64 | |
| [^] d4pg4b2 ^[email protected]%[email protected] patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-x86_64 | |
| - nayogh4 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] i3t5fut ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] xfgkmkd ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] icfhbit ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] yg3vxts ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] l643i7a ^[email protected]%[email protected]+blas+lapack arch=linux-rhel7-x86_64 | |
| [^] nnxc4wm ^[email protected]%[email protected]~ilp64+shared threads=none arch=linux-rhel7-x86_64 | |
| [+] jo63uk3 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] kcyedyh ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] mikhjgq ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] hziuwhj ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] vpsqgcg ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] xgnwei3 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] gc3zsis ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ze65gmo ^[email protected]%[email protected]+toml arch=linux-rhel7-x86_64 | |
| [^] p553wsa ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] 557icag ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] za7jmvs ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - zniig3b ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - 2v5wfwa ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] kej56sd ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_JOB_CPUS_PER_NODE} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m | |
| ==> [email protected] : has external module in ['bison/3.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-ymcya3lbfxylkvsbomj2rbzbvecsldu2) | |
| ==> [email protected] : has external module in ['cmake/3.15.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-mxqypexiy6wmh4hpnmf4lbwwwqhxzscg) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k (external boost-1.73.0-pvpzjklfqyl55rerdxp63j32kpqkfr4z) | |
| ==> [email protected] : has external module in ['hpe-mpi/2.22.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.22.hmpt-r52ypu (external hpe-mpi-2.22.hmpt-qagbv7uwlmxlmpab4m3ullbu7fxvkkpa) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/zlib-1.2.11-uubmvo (external zlib-1.2.11-wjshhipoj5m66agnke3p2dsjf32qntuf) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/spdlog-1.8.1-gwht6m | |
| ==> [email protected] : has external module in ['flex/2.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-5mabxtbvp5xw7gfjcac32iffw27sdssk) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bzip2-1.0.8-vatuhz (external bzip2-1.0.8-6zbb66a3uunskwyljh6sbgo36hbo7lj4) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libiconv-1.16-qlmq4d | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/pkgconf-1.7.3-2qyzkd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/xz-5.2.5-wzx3yy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ncurses-6.2-xvsnay (external ncurses-6.2-nedfnju3ptngli3lpj3occtiuoe2x6e3) | |
| [+] /usr (external tar-1.28-d4pg4b2ncvxd3p2ptw3j4os6jb5a7yvy) | |
| ==> [email protected] : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-nayogh4gvnag7ybxc2ud5dt4ckxod3cc) | |
| ==> [email protected] : has external module in ['python/3.8.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-icfhbitmltpoj6w6vghr23ac5erldiic) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/intel-mkl-2018.3.222-xjuqsf (external intel-mkl-2018.3.222-nnxc4wmon4s26gfyily3n6tqa43p36rj) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/readline-8.0-f2v4sr (external readline-8.0-kej56sdf2cwo7ximwd5foo34wzwveqxc) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/reportinglib-2.5.6-zas5d2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/hdf5-1.10.7-2yojmm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libxml2-2.9.10-6lr2um | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-setuptools-50.3.2-xfgkmk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-six-1.16.0-xgnwei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libsonata-report-1.0.0.20211007-kjhqfq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/gettext-0.21-6vrzcu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-attrs-20.3.0-kcyedy | |
| ==> Installing py-coverage-5.3-2v5wfwapuwn63xqjymkn5jpew7mdm6uk | |
| ==> No binary for py-coverage-5.3-2v5wfwapuwn63xqjymkn5jpew7mdm6uk found: installing from source | |
| ==> Warning: Missing a source id for neuron@develop | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/28/280baa8ec489c4f542f8940f9c4c2181f0306a8ee1a54eceba071a449fb870a0.tar.gz | |
| ==> py-coverage: Executing phase: 'build' | |
| ==> py-coverage: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-coverage-5.3-2v5wfw | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-toml-0.10.0-p553ws | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-cython-0.29.21-i3t5fu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-mpi4py-3.0.3-yg3vxt | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pyparsing-2.4.2-vpsqgc | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-more-itertools-8.7.0-mikhjg | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-wcwidth-0.1.7-za7jmv | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/coreneuron-develop-amiea4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-setuptools-scm-4.1.2-ze65gm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-numpy-1.19.4-l643i7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-packaging-19.2-hziuwh | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pluggy-0.13.0-gc3zsi | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-py-1.8.0-557ica | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pytest-5.3.4-jo63uk | |
| ==> Installing py-pytest-cov-2.8.1-zniig3b6klz2ibslrfa3digiozwp46fe | |
| ==> No binary for py-pytest-cov-2.8.1-zniig3b6klz2ibslrfa3digiozwp46fe found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/cc/cc6742d8bac45070217169f5f72ceee1e0e55b0221f54bcf24845972d3a47f2b.tar.gz | |
| ==> py-pytest-cov: Executing phase: 'build' | |
| ==> py-pytest-cov: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pytest-cov-2.8.1-zniig3 | |
| ==> Installing neuron-develop-l2cuclt2wvuiw4s54hywewweoywsqlpu | |
| ==> No binary for neuron-develop-l2cuclt2wvuiw4s54hywewweoywsqlpu found: installing from source | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/neuron-develop-l2cucl | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887/72843/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887/72843/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Thu Oct 14 02:03:52 2021 | |
| Hits: 449 / 758 (59.23 %) | |
| Direct: 11 / 767 (1.43 %) | |
| Preprocessed: 438 / 750 (58.40 %) | |
| Misses: 309 | |
| Direct: 756 | |
| Preprocessed: 312 | |
| Uncacheable: 133 | |
| Primary storage: | |
| Hits: 477 / 1528 (31.22 %) | |
| Misses: 1051 | |
| Cache size (GB): 0.46 / 0.51 (90.47 %) | |
| Files: 62738 | |
| Cleanups: 13 | |
| Uncacheable: | |
| Autoconf compile/link: 7 | |
| Called for linking: 110 | |
| Called for preprocessing: 1 | |
| Compilation failed: 3 | |
| No input file: 6 | |
| Preprocessing failed: 6 | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES=^/${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.8.3 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-numpy/1.19.4 | |
| Autoloading py-mpi4py/3.0.3 | |
| Autoloading hpe-mpi/2.22.hmpt | |
| Autoloading py-h5py/3.1.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m | |
| Returning the number of failed builds, 0 | |
| [32;1m$ exit ${num_failures}[0;m | |
| section_end:1634169833:step_script [0Ksection_start:1634169833:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache neuron-intel-5...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=280817 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache/: found 63299 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/neuron-intel-5[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1634169898:archive_cache [0Ksection_start:1634169898:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=284445 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=72843 responseStatus[0;m=201 Created token[0;m=vy3qBSwg | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=284484 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=72843 responseStatus[0;m=201 Created token[0;m=vy3qBSwg | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=284520 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=72843 responseStatus[0;m=201 Created token[0;m=vy3qBSwg | |
| section_end:1634169899:upload_artifacts_on_success [0Ksection_start:1634169899:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1634169900:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1634169676:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1634169676:resolve_secrets [0Ksection_start:1634169676:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor797539482, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 19887, build ref 2ffcc0bd233954f136c937baf23e9593a0be0e8a, job ID 72844 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887 | |
| A slurm job will be created with name GL_J72844_PROD_P112_CP0_C0 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job eligible for phase1 and phase2, setting partition=prod_p2,prod_p1 | |
| Submitted batch job 2782698 | |
| job state: R | |
| section_end:1634169778:prepare_executor [0Ksection_start:1634169778:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r4i1n18 via bbpv1.epfl.ch... | |
| section_end:1634169779:prepare_script [0Ksection_start:1634169779:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1634169780:get_sources [0Ksection_start:1634169780:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for neuron-nvhpc-5...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=277247 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading cache.zip from https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/neuron-nvhpc-5[0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1634169857:restore_cache [0Ksection_start:1634169857:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron+nmodl:gpu (72836)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=282420 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=72836 responseStatus[0;m=200 OK token[0;m=smL3tKom | |
| section_end:1634169858:download_artifacts [0Ksection_start:1634169858:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES="${SPACK_PACKAGE_DEPENDENCIES}^py-cython%gcc^py-numpy%gcc"[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_CONFIG}[0;m | |
| [32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72844/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72844/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72844/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:69 - $tempdir/$user/spack-stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 - ~/.spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 # - $spack/var/spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 # Directory in which to run tests and store test results. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 # Tests will be stored in directories named by date/time and package | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72844/spack-config/config.yaml:4 # name/hash. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:2 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72844/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:3 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:20 all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:5 root: $spack/opt/spack | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:6 build_jobs: 36 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:33 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:33 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:34 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:38 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:39 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:40 # Locations where different types of modules should be installed. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:76 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:85 tcl: $spack/share/spack/modules | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:91 lmod: $spack/share/spack/lmod | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:96 test_stage: ~/.spack/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:104 misc_cache: ~/.spack/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:110 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:115 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:120 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:128 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:137 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:163 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:170 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:178 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:184 concretizer: original | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:189 db_lock_timeout: 300 | |
| _builtin package_lock_timeout: !!null 'None' | |
| [32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = [email protected]:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = [email protected]: | |
| [32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m | |
| [32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m | |
| [32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m | |
| [32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m | |
| [32;1m$ echo New ref for ${SPACK_PACKAGE} is ${PACKAGE_REF}[0;m | |
| New ref for neuron is branch="epic/gpu_wheel" | |
| [32;1m$ sed -i -e "/^\s*version\s*(\s*\(['\"]\)develop\1/ { s/,\s*\(commit\|tag\|branch\)=\([\"']\)[^\"']\+\2//g; s#)#, ${PACKAGE_REF})#; }" "${SPACK_PACKAGE_FILE}"[0;m | |
| [32;1m$ (cd $(dirname "${SPACK_PACKAGE_FILE}") && git diff "${SPACK_PACKAGE_FILE}")[0;m | |
| diff --git a/var/spack/repos/builtin/packages/neuron/package.py b/var/spack/repos/builtin/packages/neuron/package.py | |
| index 7c6cf75..389228e 100644 | |
| --- a/var/spack/repos/builtin/packages/neuron/package.py | |
| +++ b/var/spack/repos/builtin/packages/neuron/package.py | |
| @@ -31,7 +31,7 @@ class Neuron(CMakePackage): | |
| patch("apply_79a4d2af_load_balance_fix.patch", when="@7.8.0b") | |
| patch("fix_brew_py_18e97a2d.patch", when="@7.8.0c") | |
| - version("develop", branch="master") | |
| + version("develop", branch="epic/gpu_wheel") | |
| version("8.0.0", tag="8.0.0", preferred=True) | |
| version("8.0b", commit="eb8d038") | |
| version("8.0a", tag="8.0a") | |
| [32;1m$ fi[0;m | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron@develop%nvhpc+coreneuron+debug+tests~legacy-unit ^/aoe2ga6salt5qv6vqlldt23jmmxeb6d5^py-cython%gcc^py-numpy%gcc | |
| [32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m | |
| ==> Warning: Missing a source id for neuron@develop | |
| ==> Warning: Missing a source id for nmodl@develop | |
| [32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be o6xo3erzdudo5r5hse7yyvqm2vvvwzqt | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=${SPACK_STAGE_DIR}[0;m | |
| [32;1m$ export CCACHE_DIR=${CI_PROJECT_DIR}/ccache[0;m | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ mkdir -p ${CCACHE_BASEDIR}[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887/72844/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887/72844/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Thu Oct 14 02:04:34 2021 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.50 / 0.51 (98.20 %) | |
| Files: 69853 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git gcc[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'o6xo3erzdudo5r5hse7yyvqm2vvvwzqt' | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron@develop%nvhpc+coreneuron+debug~legacy-unit+tests | |
| [+] ^coreneuron@develop%[email protected]~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile~report+shared~sympy~sympyopt+tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected]+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556,d56f31f2a3956630e5372b987d39cb79b5d2c71760fa150b8eb4a3f1a07e2658 visibility=hidden arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^nmodl@develop%[email protected]~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected]+libyaml arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - ^py-cython%gcc | |
| - ^py-numpy%gcc | |
| Concretized | |
| -------------------------------- | |
| - o6xo3er neuron@develop%[email protected]+binary+cmake~codechecks+coreneuron~cross-compile+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+multisend~profile+pysetup+python+rx3d+shared+tests build_type=RelWithDebInfo patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c arch=linux-rhel7-x86_64 | |
| - 2ifshpf ^[email protected]%[email protected] patches=ad81ef1b088459a396d908295afc3809f9a25076efaa459cdd2f21eabd1f4b16 arch=linux-rhel7-x86_64 | |
| - gluy7kg ^[email protected]%[email protected]~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64 | |
| [+] aoe2ga6 ^coreneuron@develop%[email protected]~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile~report+shared~sympy~sympyopt+tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] qu3qasv ^[email protected]%[email protected]+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556,d56f31f2a3956630e5372b987d39cb79b5d2c71760fa150b8eb4a3f1a07e2658 visibility=hidden arch=linux-rhel7-x86_64 | |
| [^] 4phgvnp ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] jop6mvp ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] awi7vrm ^nmodl@develop%[email protected]~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] afnqqnp ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] xpep3yw ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ujf2qes ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] v5gxu5s ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] rsay7hd ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] 5pew2nu ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] 6leiazm ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] 373m5vr ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] hgzmzzz ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] 2p3niph ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] 444mrrp ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ux4mwzh ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] tbbefeg ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] qywkw4y ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] rdab26o ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] dszppxf ^[email protected]%[email protected]+libyaml arch=linux-rhel7-x86_64 | |
| [^] ggibzjm ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] lhwntcl ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] l3syz4z ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - prwvb2t ^[email protected]%[email protected]+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64 | |
| [^] 5lqiecm ^[email protected]%[email protected]+bzip2+curses+git~libunistring+libxml2+tar+xz patches=6e530daaae14725d578d6cafbf7d523accc9ed29fd817bd421cf98a5f51e9e1b,bbe9f0539aa504966ac104224d25a9260faa1015ed3adda936467be9c7de4eae,fb27a3fb5e414bdc50ffebbbe2da986473df70a493caa4396226f51a67c55424 arch=linux-rhel7-x86_64 | |
| [^] id52ywi ^[email protected]%[email protected]+shared arch=linux-rhel7-x86_64 | |
| [^] o2ibs4c ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] hbvd5d6 ^[email protected]%[email protected]~python patches=05ff238cf435825ef835c7ae39376b52dc83d8caf19e962f0766c841386a305a,10a88ad47f9797cf7cf2d7d07241f665a3b6d1f31fa026728c8c2ae93e1664e9 arch=linux-rhel7-x86_64 | |
| [^] nfl4mod ^[email protected]%[email protected] patches=6e94c68d45d4cb8148c8c53699921d10b13784f758f0563ce64c838e0ca48ceb arch=linux-rhel7-x86_64 | |
| [^] qd22znx ^[email protected]%[email protected]~pic arch=linux-rhel7-x86_64 | |
| [^] riwuxjc ^[email protected]%[email protected]+optimize+pic+shared arch=linux-rhel7-x86_64 | |
| [^] ijdcmaa ^[email protected]%[email protected]~symlinks+termlib arch=linux-rhel7-x86_64 | |
| [^] tvukhb5 ^[email protected]%[email protected] patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,4e8cdf69294c376c45c39d059f11769c5c996c2d84cdfb56eb69890e0aa4e991,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-x86_64 | |
| - mddtpd5 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] eg6a4hu ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] i4mwhdw ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ottdmb2 ^[email protected]%[email protected]+blas+lapack arch=linux-rhel7-x86_64 | |
| [^] syahjjg ^[email protected]%[email protected]~ilp64+shared threads=none arch=linux-rhel7-x86_64 | |
| [^] d32wle3 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] 2j2zh6h ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] pmg6zft ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_JOB_CPUS_PER_NODE} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m | |
| ==> [email protected] : has external module in ['bison/3.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-2ifshpf6x23hf7ccztxnrrqdx4mxt3rj) | |
| ==> [email protected] : has external module in ['cmake/3.15.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-gluy7kgf2wgh5bfrenva7x4mtnzhr6r4) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k (external boost-1.73.0-qu3qasvmolllw4vbcf2maq2dz3hklz2r) | |
| ==> [email protected] : has external module in ['cuda/11.0.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cuda-11.0.2-kb4wci (external cuda-11.0.2-4phgvnpeha2grh36f6f6w7ledwlpbcs3) | |
| ==> [email protected] : has external module in ['hpe-mpi/2.22.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.22.hmpt-r52ypu (external hpe-mpi-2.22.hmpt-jop6mvp4dll4wazl3uc7ycyupteb34ia) | |
| ==> [email protected] : has external module in ['python/3.8.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-v5gxu5slpix24wzbfiyzo52rwso5gsaa) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/libyaml-0.2.4-ggibzj | |
| ==> [email protected] : has external module in ['flex/2.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-prwvb2t3p3bo5eivmcrvx2eyffvcwfqy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bzip2-1.0.8-vatuhz (external bzip2-1.0.8-id52ywihy7al2fabuv3lgb4rhoz2znfn) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/libiconv-1.16-o2ibs4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/pkgconf-1.7.3-nfl4mo | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/xz-5.2.5-qd22zn | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/zlib-1.2.11-uubmvo (external zlib-1.2.11-riwuxjcya5j363kxy7tgaac4r5qbijy7) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ncurses-6.2-xvsnay (external ncurses-6.2-ijdcmaauxxu3dblhx4qrqxsr5tmagbad) | |
| [+] /usr (external tar-1.28-tvukhb5y7rnjiw2clctp4ds3uyk4stlp) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/intel-mkl-2018.3.222-xjuqsf (external intel-mkl-2018.3.222-syahjjgpawq4c4jicb753yciaowfyr75) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/readline-8.0-f2v4sr (external readline-8.0-pmg6zftwkbtasfhlfscbmkdurshjk773) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-setuptools-50.3.2-rsay7h | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-pluggy-0.13.0-tbbefe | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-wcwidth-0.1.7-rdab26 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-mpmath-1.1.0-l3syz4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-pytz-2020.1-ujf2qe | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-py-1.8.0-qywkw4 | |
| ==> [email protected] : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-mddtpd5kgds34dklkfm2prewsfy6becf) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-pyparsing-2.4.2-444mrr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-attrs-20.3.0-373m5v | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-more-itertools-8.7.0-hgzmzz | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-markupsafe-1.1.1-5pew2n | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-six-1.16.0-ux4mwz | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-pyyaml-5.3.1-dszppx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/libxml2-2.9.10-hbvd5d | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/py-cython-0.29.21-eg6a4h | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-mpi4py-3.0.3-i4mwhd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-coverage-5.3-2j2zh6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-sympy-1.4-lhwntc | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-babel-2.7.0-xpep3y | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-packaging-19.2-2p3nip | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/gettext-0.21-5lqiec | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/py-numpy-1.19.4-ottdmb | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-jinja2-2.10.3-afnqqn | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-pytest-5.3.4-6leiaz | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.2/nmodl-develop-awi7vr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-pytest-cov-2.8.1-d32wle | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.2/coreneuron-develop-aoe2ga | |
| ==> Installing neuron-develop-o6xo3erzdudo5r5hse7yyvqm2vvvwzqt | |
| ==> No binary for neuron-develop-o6xo3erzdudo5r5hse7yyvqm2vvvwzqt found: installing from source | |
| ==> Warning: Missing a source id for nmodl@develop | |
| ==> Warning: Missing a source id for neuron@develop | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.2/neuron-develop-o6xo3e | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887/72844/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887/72844/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Thu Oct 14 02:19:45 2021 | |
| Hits: 517 / 750 (68.93 %) | |
| Direct: 7 / 759 (0.92 %) | |
| Preprocessed: 510 / 746 (68.36 %) | |
| Misses: 233 | |
| Direct: 752 | |
| Preprocessed: 236 | |
| Uncacheable: 124 | |
| Primary storage: | |
| Hits: 524 / 1512 (34.66 %) | |
| Misses: 988 | |
| Cache size (GB): 0.50 / 0.51 (98.39 %) | |
| Files: 69006 | |
| Cleanups: 15 | |
| Uncacheable: | |
| Autoconf compile/link: 7 | |
| Called for linking: 101 | |
| Called for preprocessing: 1 | |
| Compilation failed: 3 | |
| No input file: 6 | |
| Preprocessing failed: 6 | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES=^/${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.8.3 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-numpy/1.19.4 | |
| Autoloading py-mpi4py/3.0.3 | |
| Autoloading hpe-mpi/2.22.hmpt | |
| Autoloading py-h5py/3.1.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m | |
| Returning the number of failed builds, 0 | |
| [32;1m$ exit ${num_failures}[0;m | |
| section_end:1634170788:step_script [0Ksection_start:1634170788:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache neuron-nvhpc-5...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=14682 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache/: found 69567 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/neuron-nvhpc-5[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1634170864:archive_cache [0Ksection_start:1634170864:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=20771 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=72844 responseStatus[0;m=201 Created token[0;m=a1xqLs-H | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=20883 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=72844 responseStatus[0;m=201 Created token[0;m=a1xqLs-H | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=20977 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=72844 responseStatus[0;m=201 Created token[0;m=a1xqLs-H | |
| section_end:1634170866:upload_artifacts_on_success [0Ksection_start:1634170866:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1634170866:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1634169480:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1634169480:resolve_secrets [0Ksection_start:1634169480:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor133294451, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 19887, build ref 2ffcc0bd233954f136c937baf23e9593a0be0e8a, job ID 72842 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887 | |
| A slurm job will be created with name GL_J72842_PROD_P112_CP1_C1 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job eligible for phase1 and phase2, setting partition=prod_p2,prod_p1 | |
| Submitted batch job 2782696 | |
| job state: R | |
| section_end:1634169535:prepare_executor [0Ksection_start:1634169535:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r4i1n18 via bbpv1.epfl.ch... | |
| section_end:1634169537:prepare_script [0Ksection_start:1634169537:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1634169537:get_sources [0Ksection_start:1634169537:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for neuron-intel-5...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=260935 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1634169635:restore_cache [0Ksection_start:1634169635:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron+nmodl:intel (72834)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=265113 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=72834 responseStatus[0;m=200 OK token[0;m=o4F-_51w | |
| section_end:1634169636:download_artifacts [0Ksection_start:1634169636:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_CONFIG}[0;m | |
| [32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72842/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72842/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72842/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:69 - $tempdir/$user/spack-stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 - ~/.spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 # - $spack/var/spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 # Directory in which to run tests and store test results. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 # Tests will be stored in directories named by date/time and package | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72842/spack-config/config.yaml:4 # name/hash. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:2 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72842/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:3 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:20 all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:5 root: $spack/opt/spack | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:6 build_jobs: 36 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:33 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:33 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:34 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:38 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:39 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:40 # Locations where different types of modules should be installed. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:76 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:85 tcl: $spack/share/spack/modules | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:91 lmod: $spack/share/spack/lmod | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:96 test_stage: ~/.spack/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:104 misc_cache: ~/.spack/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:110 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:115 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:120 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:128 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:137 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:163 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:170 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:178 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:184 concretizer: original | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:189 db_lock_timeout: 300 | |
| _builtin package_lock_timeout: !!null 'None' | |
| [32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = [email protected]:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = [email protected]: | |
| [32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m | |
| [32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m | |
| [32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m | |
| [32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m | |
| [32;1m$ echo New ref for ${SPACK_PACKAGE} is ${PACKAGE_REF}[0;m | |
| New ref for neuron is branch="epic/gpu_wheel" | |
| [32;1m$ sed -i -e "/^\s*version\s*(\s*\(['\"]\)develop\1/ { s/,\s*\(commit\|tag\|branch\)=\([\"']\)[^\"']\+\2//g; s#)#, ${PACKAGE_REF})#; }" "${SPACK_PACKAGE_FILE}"[0;m | |
| [32;1m$ (cd $(dirname "${SPACK_PACKAGE_FILE}") && git diff "${SPACK_PACKAGE_FILE}")[0;m | |
| diff --git a/var/spack/repos/builtin/packages/neuron/package.py b/var/spack/repos/builtin/packages/neuron/package.py | |
| index 7c6cf75..389228e 100644 | |
| --- a/var/spack/repos/builtin/packages/neuron/package.py | |
| +++ b/var/spack/repos/builtin/packages/neuron/package.py | |
| @@ -31,7 +31,7 @@ class Neuron(CMakePackage): | |
| patch("apply_79a4d2af_load_balance_fix.patch", when="@7.8.0b") | |
| patch("fix_brew_py_18e97a2d.patch", when="@7.8.0c") | |
| - version("develop", branch="master") | |
| + version("develop", branch="epic/gpu_wheel") | |
| version("8.0.0", tag="8.0.0", preferred=True) | |
| version("8.0b", commit="eb8d038") | |
| version("8.0a", tag="8.0a") | |
| [32;1m$ fi[0;m | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron@develop%intel+coreneuron+debug+tests~legacy-unit ^/fbjlykb4ys6kgbq2z2zyrw6ufddzw3ts | |
| [32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m | |
| ==> Warning: Missing a source id for neuron@develop | |
| ==> Warning: Missing a source id for nmodl@develop | |
| [32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be x5fc6bslh4t3tjgxm7245xtkkgztnyge | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=${SPACK_STAGE_DIR}[0;m | |
| [32;1m$ export CCACHE_DIR=${CI_PROJECT_DIR}/ccache[0;m | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ mkdir -p ${CCACHE_BASEDIR}[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887/72842/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887/72842/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Thu Oct 14 02:00:49 2021 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.49 / 0.51 (94.80 %) | |
| Files: 68045 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git gcc[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'x5fc6bslh4t3tjgxm7245xtkkgztnyge' | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron@develop%intel+coreneuron+debug~legacy-unit+tests | |
| [+] ^coreneuron@develop%[email protected]~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared~sympy~sympyopt+tests build_type=Debug arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected]+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556 visibility=hidden arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected]~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected]+cxx~debug~fortran+hl~java+mpi+pic+shared~szip~threadsafe api=none arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected]+optimize+pic+shared arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected]~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] ^nmodl@develop%[email protected]~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected]+libyaml arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ^[email protected]%[email protected]~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| Concretized | |
| -------------------------------- | |
| - x5fc6bs neuron@develop%[email protected]+binary+cmake~codechecks+coreneuron~cross-compile+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+multisend~profile+pysetup+python+rx3d+shared+tests build_type=RelWithDebInfo patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c arch=linux-rhel7-x86_64 | |
| - ymcya3l ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - mxqypex ^[email protected]%[email protected]~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64 | |
| [+] fbjlykb ^coreneuron@develop%[email protected]~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared~sympy~sympyopt+tests build_type=Debug arch=linux-rhel7-x86_64 | |
| [^] pvpzjkl ^[email protected]%[email protected]+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556 visibility=hidden arch=linux-rhel7-x86_64 | |
| [^] qagbv7u ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] kjhqfqv ^[email protected]%[email protected]~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] 2yojmmk ^[email protected]%[email protected]+cxx~debug~fortran+hl~java+mpi+pic+shared~szip~threadsafe api=none arch=linux-rhel7-x86_64 | |
| [^] wjshhip ^[email protected]%[email protected]+optimize+pic+shared arch=linux-rhel7-x86_64 | |
| [^] gwht6mm ^[email protected]%[email protected]~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] lqyttqy ^nmodl@develop%[email protected]~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] ubiktsv ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] yrbfda2 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] oe2c27i ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] icfhbit ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] xfgkmkd ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] oe2hrft ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] jo63uk3 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] kcyedyh ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] mikhjgq ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] hziuwhj ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] vpsqgcg ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] xgnwei3 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] gc3zsis ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] 557icag ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] za7jmvs ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] chpzzlm ^[email protected]%[email protected]+libyaml arch=linux-rhel7-x86_64 | |
| [^] 4237mpr ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] runxrmn ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] d6t5uhn ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] zas5d2a ^[email protected]%[email protected]~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| - 5mabxtb ^[email protected]%[email protected]+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64 | |
| [^] 6vrzcuv ^[email protected]%[email protected]+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel7-x86_64 | |
| [^] 6zbb66a ^[email protected]%[email protected]+shared arch=linux-rhel7-x86_64 | |
| [^] qlmq4dv ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] 6lr2umn ^[email protected]%[email protected]~python arch=linux-rhel7-x86_64 | |
| [^] 2qyzkdl ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] wzx3yy4 ^[email protected]%[email protected]~pic arch=linux-rhel7-x86_64 | |
| [^] nedfnju ^[email protected]%[email protected]~symlinks+termlib arch=linux-rhel7-x86_64 | |
| [^] d4pg4b2 ^[email protected]%[email protected] patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-x86_64 | |
| - nayogh4 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] i3t5fut ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] yg3vxts ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] l643i7a ^[email protected]%[email protected]+blas+lapack arch=linux-rhel7-x86_64 | |
| [^] nnxc4wm ^[email protected]%[email protected]~ilp64+shared threads=none arch=linux-rhel7-x86_64 | |
| [+] zniig3b ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [+] 2v5wfwa ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] kej56sd ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_JOB_CPUS_PER_NODE} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m | |
| ==> [email protected] : has external module in ['bison/3.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-ymcya3lbfxylkvsbomj2rbzbvecsldu2) | |
| ==> [email protected] : has external module in ['cmake/3.15.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-mxqypexiy6wmh4hpnmf4lbwwwqhxzscg) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k (external boost-1.73.0-pvpzjklfqyl55rerdxp63j32kpqkfr4z) | |
| ==> [email protected] : has external module in ['hpe-mpi/2.22.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.22.hmpt-r52ypu (external hpe-mpi-2.22.hmpt-qagbv7uwlmxlmpab4m3ullbu7fxvkkpa) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/zlib-1.2.11-uubmvo (external zlib-1.2.11-wjshhipoj5m66agnke3p2dsjf32qntuf) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/spdlog-1.8.1-gwht6m | |
| ==> [email protected] : has external module in ['python/3.8.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-icfhbitmltpoj6w6vghr23ac5erldiic) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libyaml-0.2.4-4237mp | |
| ==> [email protected] : has external module in ['flex/2.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-5mabxtbvp5xw7gfjcac32iffw27sdssk) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bzip2-1.0.8-vatuhz (external bzip2-1.0.8-6zbb66a3uunskwyljh6sbgo36hbo7lj4) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libiconv-1.16-qlmq4d | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/pkgconf-1.7.3-2qyzkd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/xz-5.2.5-wzx3yy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ncurses-6.2-xvsnay (external ncurses-6.2-nedfnju3ptngli3lpj3occtiuoe2x6e3) | |
| [+] /usr (external tar-1.28-d4pg4b2ncvxd3p2ptw3j4os6jb5a7yvy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/intel-mkl-2018.3.222-xjuqsf (external intel-mkl-2018.3.222-nnxc4wmon4s26gfyily3n6tqa43p36rj) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/readline-8.0-f2v4sr (external readline-8.0-kej56sdf2cwo7ximwd5foo34wzwveqxc) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/reportinglib-2.5.6-zas5d2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/hdf5-1.10.7-2yojmm | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-wcwidth-0.1.7-za7jmv | |
| ==> [email protected] : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-nayogh4gvnag7ybxc2ud5dt4ckxod3cc) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-setuptools-50.3.2-xfgkmk | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-markupsafe-1.1.1-oe2hrf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-six-1.16.0-xgnwei | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pluggy-0.13.0-gc3zsi | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pytz-2020.1-oe2c27 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pyparsing-2.4.2-vpsqgc | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-py-1.8.0-557ica | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-attrs-20.3.0-kcyedy | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-more-itertools-8.7.0-mikhjg | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-mpmath-1.1.0-d6t5uh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pyyaml-5.3.1-chpzzl | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libxml2-2.9.10-6lr2um | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libsonata-report-1.0.0.20211007-kjhqfq | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-coverage-5.3-2v5wfw | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-mpi4py-3.0.3-yg3vxt | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-cython-0.29.21-i3t5fu | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-babel-2.7.0-yrbfda | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-packaging-19.2-hziuwh | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-sympy-1.4-runxrm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/gettext-0.21-6vrzcu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-numpy-1.19.4-l643i7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-jinja2-2.10.3-ubikts | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pytest-5.3.4-jo63uk | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pytest-cov-2.8.1-zniig3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/nmodl-develop-lqyttq | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/coreneuron-develop-fbjlyk | |
| ==> Installing neuron-develop-x5fc6bslh4t3tjgxm7245xtkkgztnyge | |
| ==> No binary for neuron-develop-x5fc6bslh4t3tjgxm7245xtkkgztnyge found: installing from source | |
| ==> Warning: Missing a source id for nmodl@develop | |
| ==> Warning: Missing a source id for neuron@develop | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/neuron-develop-x5fc6b | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887/72842/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887/72842/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Thu Oct 14 02:09:51 2021 | |
| Hits: 444 / 754 (58.89 %) | |
| Direct: 6 / 763 (0.79 %) | |
| Preprocessed: 438 / 751 (58.32 %) | |
| Misses: 310 | |
| Direct: 757 | |
| Preprocessed: 313 | |
| Uncacheable: 132 | |
| Primary storage: | |
| Hits: 452 / 1520 (29.74 %) | |
| Misses: 1068 | |
| Cache size (GB): 0.43 / 0.51 (84.84 %) | |
| Files: 57463 | |
| Cleanups: 16 | |
| Uncacheable: | |
| Autoconf compile/link: 7 | |
| Called for linking: 109 | |
| Called for preprocessing: 1 | |
| Compilation failed: 3 | |
| No input file: 6 | |
| Preprocessing failed: 6 | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES=^/${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.8.3 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-numpy/1.19.4 | |
| Autoloading py-mpi4py/3.0.3 | |
| Autoloading hpe-mpi/2.22.hmpt | |
| Autoloading py-h5py/3.1.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m | |
| Returning the number of failed builds, 0 | |
| [32;1m$ exit ${num_failures}[0;m | |
| section_end:1634170194:step_script [0Ksection_start:1634170194:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache neuron-intel-5...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=301878 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache/: found 58024 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/neuron-intel-5[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1634170254:archive_cache [0Ksection_start:1634170254:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=303629 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=72842 responseStatus[0;m=201 Created token[0;m=mQKikS1x | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=303656 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=72842 responseStatus[0;m=201 Created token[0;m=mQKikS1x | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=303682 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=72842 responseStatus[0;m=201 Created token[0;m=mQKikS1x | |
| section_end:1634170255:upload_artifacts_on_success [0Ksection_start:1634170255:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1634170256:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1634168774:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1634168774:resolve_secrets [0Ksection_start:1634168774:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor279055314, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 19887, build ref 2ffcc0bd233954f136c937baf23e9593a0be0e8a, job ID 72833 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887 | |
| A slurm job will be created with name GL_J72833_PROD_P112_CP1_C1 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job eligible for phase1 and phase2, setting partition=prod_p2,prod_p1 | |
| Submitted batch job 2782620 | |
| job state: R | |
| section_end:1634168787:prepare_executor [0Ksection_start:1634168787:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r4i1n18 via bbpv1.epfl.ch... | |
| section_end:1634168790:prepare_script [0Ksection_start:1634168790:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1634168791:get_sources [0Ksection_start:1634168791:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for nmodl-nvhpc-5...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=237818 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading cache.zip from https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/nmodl-nvhpc-5[0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1634168797:restore_cache [0Ksection_start:1634168797:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for spack_setup (72831)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=237891 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=72831 responseStatus[0;m=200 OK token[0;m=wyjcSmWr | |
| section_end:1634168798:download_artifacts [0Ksection_start:1634168798:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_CONFIG}[0;m | |
| [32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72833/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72833/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72833/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:69 - $tempdir/$user/spack-stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 - ~/.spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 # - $spack/var/spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 # Directory in which to run tests and store test results. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 # Tests will be stored in directories named by date/time and package | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72833/spack-config/config.yaml:4 # name/hash. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:2 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72833/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:3 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:20 all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:5 root: $spack/opt/spack | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:6 build_jobs: 36 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:33 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:33 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:34 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:38 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:39 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:40 # Locations where different types of modules should be installed. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:76 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:85 tcl: $spack/share/spack/modules | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:91 lmod: $spack/share/spack/lmod | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:96 test_stage: ~/.spack/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:104 misc_cache: ~/.spack/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:110 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:115 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:120 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:128 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:137 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:163 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:170 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:178 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:184 concretizer: original | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:189 db_lock_timeout: 300 | |
| _builtin package_lock_timeout: !!null 'None' | |
| [32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = [email protected]:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = [email protected]: | |
| [32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m | |
| [32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m | |
| [32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m | |
| [32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install nmodl@develop%nvhpc~legacy-unit ^bison%gcc^flex%gcc^py-jinja2%gcc^py-sympy%gcc^py-pyyaml%gcc | |
| [32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m | |
| ==> Warning: Missing a source id for nmodl@develop | |
| [32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be awi7vrm4eaiuzdafhedebwthgzxznx4j | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=${SPACK_STAGE_DIR}[0;m | |
| [32;1m$ export CCACHE_DIR=${CI_PROJECT_DIR}/ccache[0;m | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ mkdir -p ${CCACHE_BASEDIR}[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887/72833/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887/72833/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Thu Oct 14 01:47:21 2021 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.15 / 0.51 (29.99 %) | |
| Files: 1175 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git gcc[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'awi7vrm4eaiuzdafhedebwthgzxznx4j' | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - nmodl@develop%nvhpc~legacy-unit | |
| - ^bison%gcc | |
| - ^flex%gcc | |
| - ^py-jinja2%gcc | |
| - ^py-pyyaml%gcc | |
| - ^py-sympy%gcc | |
| Concretized | |
| -------------------------------- | |
| - awi7vrm nmodl@develop%[email protected]~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| - 2ifshpf ^[email protected]%[email protected] patches=ad81ef1b088459a396d908295afc3809f9a25076efaa459cdd2f21eabd1f4b16 arch=linux-rhel7-x86_64 | |
| - gluy7kg ^[email protected]%[email protected]~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64 | |
| - prwvb2t ^[email protected]%[email protected]+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64 | |
| - mddtpd5 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - afnqqnp ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - xpep3yw ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - ujf2qes ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] rsay7hd ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] v5gxu5s ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| - 5pew2nu ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] 6leiazm ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] 373m5vr ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] hgzmzzz ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] 2p3niph ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] 444mrrp ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ux4mwzh ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] tbbefeg ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] zbwtznm ^[email protected]%[email protected]+toml arch=linux-rhel7-x86_64 | |
| [^] k3yba4y ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] qywkw4y ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] rdab26o ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - dszppxf ^[email protected]%[email protected]+libyaml arch=linux-rhel7-x86_64 | |
| [^] ggibzjm ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - lhwntcl ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - l3syz4z ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_JOB_CPUS_PER_NODE} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m | |
| ==> [email protected] : has external module in ['bison/3.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-2ifshpf6x23hf7ccztxnrrqdx4mxt3rj) | |
| ==> [email protected] : has external module in ['cmake/3.15.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-gluy7kgf2wgh5bfrenva7x4mtnzhr6r4) | |
| ==> [email protected] : has external module in ['flex/2.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-prwvb2t3p3bo5eivmcrvx2eyffvcwfqy) | |
| ==> [email protected] : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-mddtpd5kgds34dklkfm2prewsfy6becf) | |
| ==> [email protected] : has external module in ['python/3.8.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-v5gxu5slpix24wzbfiyzo52rwso5gsaa) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/libyaml-0.2.4-ggibzj | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-six-1.16.0-ux4mwz | |
| ==> Installing py-mpmath-1.1.0-l3syz4zlt7jlkpe56wtyhdvsi5e5h2nj | |
| ==> No binary for py-mpmath-1.1.0-l3syz4zlt7jlkpe56wtyhdvsi5e5h2nj found: installing from source | |
| ==> Warning: Missing a source id for nmodl@develop | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/fc/fc17abe05fbab3382b61a123c398508183406fa132e0223874578e20946499f6.tar.gz | |
| ==> py-mpmath: Executing phase: 'build' | |
| ==> py-mpmath: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-mpmath-1.1.0-l3syz4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-setuptools-50.3.2-rsay7h | |
| ==> Installing py-pyyaml-5.3.1-dszppxfqapggdokpec7viw45xx62rjaf | |
| ==> No binary for py-pyyaml-5.3.1-dszppxfqapggdokpec7viw45xx62rjaf found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/b8/b8eac752c5e14d3eca0e6dd9199cd627518cb5ec06add0de9d32baeee6fe645d.tar.gz | |
| ==> py-pyyaml: Executing phase: 'build_ext' | |
| ==> py-pyyaml: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-pyyaml-5.3.1-dszppx | |
| ==> Installing py-sympy-1.4-lhwntcljkmu6eptc4dzn2ibspkjvhvjw | |
| ==> No binary for py-sympy-1.4-lhwntcljkmu6eptc4dzn2ibspkjvhvjw found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/71/71a11e5686ae7ab6cb8feb5bd2651ef4482f8fd43a7c27e645a165e4353b23e1.tar.gz | |
| ==> py-sympy: Executing phase: 'build' | |
| ==> py-sympy: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-sympy-1.4-lhwntc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-toml-0.10.0-k3yba4 | |
| ==> Installing py-markupsafe-1.1.1-5pew2nu7kniwhdjc57ouymcgz3koo2qo | |
| ==> No binary for py-markupsafe-1.1.1-5pew2nu7kniwhdjc57ouymcgz3koo2qo found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/29/29872e92839765e546828bb7754a68c418d927cd064fd4708fab9fe9c8bb116b.tar.gz | |
| ==> py-markupsafe: Executing phase: 'build' | |
| ==> py-markupsafe: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-markupsafe-1.1.1-5pew2n | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-pyparsing-2.4.2-444mrr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-wcwidth-0.1.7-rdab26 | |
| ==> Installing py-pytz-2020.1-ujf2qesoetsxrgrnfr4i32d7aqx6ahnj | |
| ==> No binary for py-pytz-2020.1-ujf2qesoetsxrgrnfr4i32d7aqx6ahnj found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/c3/c35965d010ce31b23eeb663ed3cc8c906275d6be1a34393a1d73a41febf4a048.tar.gz | |
| ==> py-pytz: Executing phase: 'build' | |
| ==> py-pytz: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-pytz-2020.1-ujf2qe | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-attrs-20.3.0-373m5v | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-more-itertools-8.7.0-hgzmzz | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-setuptools-scm-4.1.2-zbwtzn | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-packaging-19.2-2p3nip | |
| ==> Installing py-babel-2.7.0-xpep3ywshdt2sumfvwl7xwr4iyharkla | |
| ==> No binary for py-babel-2.7.0-xpep3ywshdt2sumfvwl7xwr4iyharkla found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/e8/e86135ae101e31e2c8ec20a4e0c5220f4eed12487d5cf3f78be7e98d3a57fc28.tar.gz | |
| ==> py-babel: Executing phase: 'build' | |
| ==> py-babel: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-babel-2.7.0-xpep3y | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-py-1.8.0-qywkw4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-pluggy-0.13.0-tbbefe | |
| ==> Installing py-jinja2-2.10.3-afnqqnpla6cdujgmlak32wyouz3gljv2 | |
| ==> No binary for py-jinja2-2.10.3-afnqqnpla6cdujgmlak32wyouz3gljv2 found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/9f/9fe95f19286cfefaa917656583d020be14e7859c6b0252588391e47db34527de.tar.gz | |
| ==> py-jinja2: Executing phase: 'build' | |
| ==> py-jinja2: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-jinja2-2.10.3-afnqqn | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.2/py-pytest-5.3.4-6leiaz | |
| ==> Installing nmodl-develop-awi7vrm4eaiuzdafhedebwthgzxznx4j | |
| ==> No binary for nmodl-develop-awi7vrm4eaiuzdafhedebwthgzxznx4j found: installing from source | |
| ==> nmodl: Executing phase: 'cmake' | |
| ==> nmodl: Executing phase: 'build' | |
| ==> nmodl: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.2/nmodl-develop-awi7vr | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887/72833/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887/72833/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Thu Oct 14 01:49:17 2021 | |
| Hits: 130 / 132 (98.48 %) | |
| Direct: 122 / 132 (92.42 %) | |
| Preprocessed: 8 / 10 (80.00 %) | |
| Misses: 2 | |
| Direct: 10 | |
| Preprocessed: 2 | |
| Uncacheable: 26 | |
| Primary storage: | |
| Hits: 258 / 264 (97.73 %) | |
| Misses: 6 | |
| Cache size (GB): 0.15 / 0.51 (30.00 %) | |
| Files: 1179 | |
| Uncacheable: | |
| Called for linking: 26 | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES=^/${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.8.3 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-numpy/1.19.4 | |
| Autoloading py-mpi4py/3.0.3 | |
| Autoloading hpe-mpi/2.22.hmpt | |
| Autoloading py-h5py/3.1.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m | |
| Returning the number of failed builds, 0 | |
| [32;1m$ exit ${num_failures}[0;m | |
| section_end:1634168958:step_script [0Ksection_start:1634168958:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache nmodl-nvhpc-5...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=244653 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache/: found 1740 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/nmodl-nvhpc-5[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1634168965:archive_cache [0Ksection_start:1634168965:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=244944 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=72833 responseStatus[0;m=201 Created token[0;m=ASv1jjao | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=244986 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=72833 responseStatus[0;m=201 Created token[0;m=ASv1jjao | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=245011 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=72833 responseStatus[0;m=201 Created token[0;m=ASv1jjao | |
| section_end:1634168967:upload_artifacts_on_success [0Ksection_start:1634168967:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1634168967:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1634168774:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1634168774:resolve_secrets [0Ksection_start:1634168774:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor281043872, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 19887, build ref 2ffcc0bd233954f136c937baf23e9593a0be0e8a, job ID 72832 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887 | |
| A slurm job will be created with name GL_J72832_PROD_P112_CP0_C0 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job eligible for phase1 and phase2, setting partition=prod_p2,prod_p1 | |
| Submitted batch job 2782622 | |
| job state: R | |
| section_end:1634168787:prepare_executor [0Ksection_start:1634168787:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r4i1n18 via bbpv1.epfl.ch... | |
| section_end:1634168790:prepare_script [0Ksection_start:1634168790:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1634168791:get_sources [0Ksection_start:1634168791:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for nmodl-intel-5...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=237760 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading cache.zip from https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/nmodl-intel-5[0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1634168803:restore_cache [0Ksection_start:1634168803:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for spack_setup (72831)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=238361 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=72831 responseStatus[0;m=200 OK token[0;m=wyjcSmWr | |
| section_end:1634168803:download_artifacts [0Ksection_start:1634168803:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_CONFIG}[0;m | |
| [32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72832/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72832/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72832/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:69 - $tempdir/$user/spack-stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 - ~/.spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 # - $spack/var/spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 # Directory in which to run tests and store test results. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:70 # Tests will be stored in directories named by date/time and package | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72832/spack-config/config.yaml:4 # name/hash. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:2 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72832/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:3 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:20 all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:5 root: $spack/opt/spack | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/config.yaml:6 build_jobs: 36 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:33 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:33 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:34 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:38 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:39 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:40 # Locations where different types of modules should be installed. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:76 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:85 tcl: $spack/share/spack/modules | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:91 lmod: $spack/share/spack/lmod | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:96 test_stage: ~/.spack/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:104 misc_cache: ~/.spack/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:110 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:115 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:120 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:128 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:137 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:163 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:170 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:178 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:184 concretizer: original | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/etc/spack/defaults/config.yaml:189 db_lock_timeout: 300 | |
| _builtin package_lock_timeout: !!null 'None' | |
| [32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = [email protected]:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = [email protected]: | |
| [32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m | |
| [32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m | |
| [32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m | |
| [32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install nmodl@develop%intel~legacy-unit | |
| [32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m | |
| ==> Warning: Missing a source id for nmodl@develop | |
| [32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be lqyttqytclxdwwickak7uvjmb6a3au3g | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=${SPACK_STAGE_DIR}[0;m | |
| [32;1m$ export CCACHE_DIR=${CI_PROJECT_DIR}/ccache[0;m | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ mkdir -p ${CCACHE_BASEDIR}[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887/72832/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887/72832/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Thu Oct 14 01:47:45 2021 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.43 / 0.51 (84.42 %) | |
| Files: 2465 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git gcc[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'lqyttqytclxdwwickak7uvjmb6a3au3g' | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - nmodl@develop%intel~legacy-unit | |
| Concretized | |
| -------------------------------- | |
| - lqyttqy nmodl@develop%[email protected]~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| - ymcya3l ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - mxqypex ^[email protected]%[email protected]~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64 | |
| - 5mabxtb ^[email protected]%[email protected]+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64 | |
| - nayogh4 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - ubiktsv ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - yrbfda2 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] oe2c27i ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] xfgkmkd ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] icfhbit ^[email protected]%[email protected]+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| - oe2hrft ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - jo63uk3 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] kcyedyh ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - mikhjgq ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - hziuwhj ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] vpsqgcg ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] xgnwei3 ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - gc3zsis ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] ze65gmo ^[email protected]%[email protected]+toml arch=linux-rhel7-x86_64 | |
| [^] p553wsa ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - 557icag ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - za7jmvs ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [^] chpzzlm ^[email protected]%[email protected]+libyaml arch=linux-rhel7-x86_64 | |
| [^] 4237mpr ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - runxrmn ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| - d6t5uhn ^[email protected]%[email protected] arch=linux-rhel7-x86_64 | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_JOB_CPUS_PER_NODE} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m | |
| ==> [email protected] : has external module in ['bison/3.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-ymcya3lbfxylkvsbomj2rbzbvecsldu2) | |
| ==> [email protected] : has external module in ['cmake/3.15.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-mxqypexiy6wmh4hpnmf4lbwwwqhxzscg) | |
| ==> [email protected] : has external module in ['flex/2.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-5mabxtbvp5xw7gfjcac32iffw27sdssk) | |
| ==> [email protected] : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-nayogh4gvnag7ybxc2ud5dt4ckxod3cc) | |
| ==> [email protected] : has external module in ['python/3.8.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-icfhbitmltpoj6w6vghr23ac5erldiic) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libyaml-0.2.4-4237mp | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-setuptools-50.3.2-xfgkmk | |
| ==> Installing py-mpmath-1.1.0-d6t5uhnfv6vz76zvbq6dxzezju47q4b2 | |
| ==> No binary for py-mpmath-1.1.0-d6t5uhnfv6vz76zvbq6dxzezju47q4b2 found: installing from source | |
| ==> Warning: Missing a source id for nmodl@develop | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/fc/fc17abe05fbab3382b61a123c398508183406fa132e0223874578e20946499f6.tar.gz | |
| ==> py-mpmath: Executing phase: 'build' | |
| ==> py-mpmath: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-mpmath-1.1.0-d6t5uh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-six-1.16.0-xgnwei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pyyaml-5.3.1-chpzzl | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pytz-2020.1-oe2c27 | |
| ==> Installing py-wcwidth-0.1.7-za7jmvshfdsnmghmumjvxfinateuen3k | |
| ==> No binary for py-wcwidth-0.1.7-za7jmvshfdsnmghmumjvxfinateuen3k found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/3d/3df37372226d6e63e1b1e1eda15c594bca98a22d33a23832a90998faa96bc65e.tar.gz | |
| ==> py-wcwidth: Executing phase: 'build' | |
| ==> py-wcwidth: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-wcwidth-0.1.7-za7jmv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pyparsing-2.4.2-vpsqgc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-toml-0.10.0-p553ws | |
| ==> Installing py-more-itertools-8.7.0-mikhjgqoad5w4yqy27gs5e6resjbaofw | |
| ==> No binary for py-more-itertools-8.7.0-mikhjgqoad5w4yqy27gs5e6resjbaofw found: installing from source | |
| ==> Fetching https://pypi.io/packages/source/m/more-itertools/more-itertools-8.7.0.tar.gz | |
| ==> py-more-itertools: Executing phase: 'build' | |
| ==> py-more-itertools: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-more-itertools-8.7.0-mikhjg | |
| ==> Installing py-markupsafe-1.1.1-oe2hrfthehpamljikolcjblr7mt52724 | |
| ==> No binary for py-markupsafe-1.1.1-oe2hrfthehpamljikolcjblr7mt52724 found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/29/29872e92839765e546828bb7754a68c418d927cd064fd4708fab9fe9c8bb116b.tar.gz | |
| ==> py-markupsafe: Executing phase: 'build' | |
| ==> py-markupsafe: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-markupsafe-1.1.1-oe2hrf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-attrs-20.3.0-kcyedy | |
| ==> Installing py-sympy-1.4-runxrmnc6ccdqey2sq7njyz4u4i2x7xw | |
| ==> No binary for py-sympy-1.4-runxrmnc6ccdqey2sq7njyz4u4i2x7xw found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/71/71a11e5686ae7ab6cb8feb5bd2651ef4482f8fd43a7c27e645a165e4353b23e1.tar.gz | |
| ==> py-sympy: Executing phase: 'build' | |
| ==> py-sympy: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-sympy-1.4-runxrm | |
| ==> Installing py-babel-2.7.0-yrbfda2telivet3ruvwscmtafc7zoys7 | |
| ==> No binary for py-babel-2.7.0-yrbfda2telivet3ruvwscmtafc7zoys7 found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/e8/e86135ae101e31e2c8ec20a4e0c5220f4eed12487d5cf3f78be7e98d3a57fc28.tar.gz | |
| ==> py-babel: Executing phase: 'build' | |
| ==> py-babel: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-babel-2.7.0-yrbfda | |
| ==> Installing py-packaging-19.2-hziuwhjrhckeozwekkhwxabvm4onfilt | |
| ==> No binary for py-packaging-19.2-hziuwhjrhckeozwekkhwxabvm4onfilt found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/28/28b924174df7a2fa32c1953825ff29c61e2f5e082343165438812f00d3a7fc47.tar.gz | |
| ==> py-packaging: Executing phase: 'build' | |
| ==> py-packaging: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-packaging-19.2-hziuwh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-setuptools-scm-4.1.2-ze65gm | |
| ==> Installing py-jinja2-2.10.3-ubiktsvw22gxnvhwzsoloqliz7czyhab | |
| ==> No binary for py-jinja2-2.10.3-ubiktsvw22gxnvhwzsoloqliz7czyhab found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/9f/9fe95f19286cfefaa917656583d020be14e7859c6b0252588391e47db34527de.tar.gz | |
| ==> py-jinja2: Executing phase: 'build' | |
| ==> py-jinja2: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-jinja2-2.10.3-ubikts | |
| ==> Installing py-pluggy-0.13.0-gc3zsisoxxbiopoa44i536m232c65zb4 | |
| ==> No binary for py-pluggy-0.13.0-gc3zsisoxxbiopoa44i536m232c65zb4 found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/fa/fa5fa1622fa6dd5c030e9cad086fa19ef6a0cf6d7a2d12318e10cb49d6d68f34.tar.gz | |
| ==> py-pluggy: Executing phase: 'build' | |
| ==> py-pluggy: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pluggy-0.13.0-gc3zsi | |
| ==> Installing py-py-1.8.0-557icag4kia4rysswd2uxdettfkewclq | |
| ==> No binary for py-py-1.8.0-557icag4kia4rysswd2uxdettfkewclq found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/dc/dc639b046a6e2cff5bbe40194ad65936d6ba360b52b3c3fe1d08a82dd50b5e53.tar.gz | |
| ==> py-py: Executing phase: 'build' | |
| ==> py-py: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-py-1.8.0-557ica | |
| ==> Installing py-pytest-5.3.4-jo63uk3qcowoxe2ogccodpfmsdr2r557 | |
| ==> No binary for py-pytest-5.3.4-jo63uk3qcowoxe2ogccodpfmsdr2r557 found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/1d/1d122e8be54d1a709e56f82e2d85dcba3018313d64647f38a91aec88c239b600.tar.gz | |
| ==> py-pytest: Executing phase: 'build' | |
| ==> py-pytest: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pytest-5.3.4-jo63uk | |
| ==> Installing nmodl-develop-lqyttqytclxdwwickak7uvjmb6a3au3g | |
| ==> No binary for nmodl-develop-lqyttqytclxdwwickak7uvjmb6a3au3g found: installing from source | |
| ==> nmodl: Executing phase: 'cmake' | |
| ==> nmodl: Executing phase: 'build' | |
| ==> nmodl: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/nmodl-develop-lqyttq | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887/72832/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887/72832/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Thu Oct 14 01:51:05 2021 | |
| Hits: 122 / 132 (92.42 %) | |
| Direct: 114 / 132 (86.36 %) | |
| Preprocessed: 8 / 18 (44.44 %) | |
| Misses: 10 | |
| Direct: 18 | |
| Preprocessed: 10 | |
| Uncacheable: 28 | |
| Primary storage: | |
| Hits: 243 / 265 (91.70 %) | |
| Misses: 22 | |
| Cache size (GB): 0.43 / 0.51 (84.40 %) | |
| Files: 2483 | |
| Uncacheable: | |
| Called for linking: 28 | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES=^/${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.8.3 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-numpy/1.19.4 | |
| Autoloading py-mpi4py/3.0.3 | |
| Autoloading hpe-mpi/2.22.hmpt | |
| Autoloading py-h5py/3.1.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m | |
| Returning the number of failed builds, 0 | |
| [32;1m$ exit ${num_failures}[0;m | |
| section_end:1634169066:step_script [0Ksection_start:1634169066:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache nmodl-intel-5...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=248024 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache/: found 3044 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/nmodl-intel-5[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1634169085:archive_cache [0Ksection_start:1634169085:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=248688 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=72832 responseStatus[0;m=201 Created token[0;m=iz74H59e | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=248712 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=72832 responseStatus[0;m=201 Created token[0;m=iz74H59e | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=248737 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=72832 responseStatus[0;m=201 Created token[0;m=iz74H59e | |
| section_end:1634169086:upload_artifacts_on_success [0Ksection_start:1634169086:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1634169086:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| ! |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1634168747:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1634168747:resolve_secrets [0Ksection_start:1634168747:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor837848567, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 19887, build ref 2ffcc0bd233954f136c937baf23e9593a0be0e8a, job ID 72831 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887 | |
| A slurm job will be created with name GL_J72831_PROD_P112_CP0_C0 | |
| Job parameters: memory=512M, cpus_per_task=1, duration=10:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job eligible for phase1 and phase2, setting partition=prod_p2,prod_p1 | |
| Submitted batch job 2782619 | |
| job state: R | |
| section_end:1634168748:prepare_executor [0Ksection_start:1634168748:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r4i1n18 via bbpv1.epfl.ch... | |
| section_end:1634168749:prepare_script [0Ksection_start:1634168749:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1634168750:get_sources [0Ksection_start:1634168750:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ touch spack_clone_variables.env[0;m | |
| [32;1m$ if [[ "${PARSE_GITHUB_PR_DESCRIPTIONS}" == "true" && "${CI_PIPELINE_SOURCE}" == "external_pull_request_event" ]]; then[0;m | |
| [32;1m$ cat > parse_description.py << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ cat parse_description.py[0;m | |
| from __future__ import print_function | |
| import os | |
| import re | |
| import requests | |
| pr_info = requests.get("https://api.github.com/repos/{}/pulls/{}".format( | |
| os.environ['CI_EXTERNAL_PULL_REQUEST_TARGET_REPOSITORY'], | |
| os.environ['CI_EXTERNAL_PULL_REQUEST_IID']), | |
| headers={'Accept': 'application/vnd.github.v3+json'}) | |
| pr_body = pr_info.json()["body"] | |
| # match something like NEURON_BRANCH=foo/bar | |
| pat = re.compile('^([A-Z0-9_]+)_([A-Z]+)=([A-Z0-9\-\_\/]+)$', re.IGNORECASE) | |
| def parse_term(m): | |
| ref_type = m.group(2).lower() | |
| if ref_type not in {'branch', 'tag', 'ref'}: return | |
| print('SPACK_PACKAGE_REF_' + m.group(1).lower() + '=' + ref_type + '="' + m.group(3) + '"') | |
| if pr_body is not None: | |
| for pr_body_line in pr_body.splitlines(): | |
| if not pr_body_line.startswith('CI_BRANCHES:'): continue | |
| for config_term in pr_body_line[12:].split(','): | |
| pat.sub(parse_term, config_term) | |
| [32;1m$ python parse_description.py > spack_clone_variables.env[0;m | |
| [32;1m$ cat spack_clone_variables.env[0;m | |
| SPACK_PACKAGE_REF_neuron=branch="epic/gpu_wheel" | |
| [32;1m$ fi[0;m | |
| [32;1m$ echo Using ${PWD} as a working directory common to the whole pipeline...[0;m | |
| Using /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72831 as a working directory common to the whole pipeline... | |
| [32;1m$ SPACK_BRANCH_PARSED=$(sed -n -e "s/^SPACK_PACKAGE_REF_spack=branch=\(['\"]\)\([^\1]\+\)\1/\2/p" spack_clone_variables.env)[0;m | |
| [32;1m$ SPACK_BRANCH=${SPACK_BRANCH_PARSED:-$SPACK_BRANCH}[0;m | |
| [32;1m$ echo Checking out the ${SPACK_BRANCH} of Spack...[0;m | |
| Checking out the develop of Spack... | |
| [32;1m$ git clone --depth 1 --single-branch --branch ${SPACK_BRANCH} ${SPACK_URL} spack[0;m | |
| Cloning into 'spack'... | |
| Checking out files: 8% (619/7694) Checking out files: 9% (693/7694) Checking out files: 10% (770/7694) Checking out files: 11% (847/7694) Checking out files: 12% (924/7694) Checking out files: 13% (1001/7694) Checking out files: 14% (1078/7694) Checking out files: 15% (1155/7694) Checking out files: 15% (1204/7694) Checking out files: 16% (1232/7694) Checking out files: 17% (1308/7694) Checking out files: 18% (1385/7694) Checking out files: 19% (1462/7694) Checking out files: 20% (1539/7694) Checking out files: 21% (1616/7694) Checking out files: 22% (1693/7694) Checking out files: 22% (1700/7694) Checking out files: 23% (1770/7694) Checking out files: 24% (1847/7694) Checking out files: 25% (1924/7694) Checking out files: 26% (2001/7694) Checking out files: 27% (2078/7694) Checking out files: 28% (2155/7694) Checking out files: 29% (2232/7694) Checking out files: 30% (2309/7694) Checking out files: 30% (2326/7694) Checking out files: 31% (2386/7694) Checking out files: 32% (2463/7694) Checking out files: 33% (2540/7694) Checking out files: 34% (2616/7694) Checking out files: 35% (2693/7694) Checking out files: 36% (2770/7694) Checking out files: 37% (2847/7694) Checking out files: 37% (2864/7694) Checking out files: 38% (2924/7694) Checking out files: 39% (3001/7694) Checking out files: 40% (3078/7694) Checking out files: 41% (3155/7694) Checking out files: 42% (3232/7694) Checking out files: 43% (3309/7694) Checking out files: 44% (3386/7694) Checking out files: 44% (3394/7694) Checking out files: 45% (3463/7694) Checking out files: 46% (3540/7694) Checking out files: 47% (3617/7694) Checking out files: 48% (3694/7694) Checking out files: 49% (3771/7694) Checking out files: 50% (3847/7694) Checking out files: 51% (3924/7694) Checking out files: 52% (4001/7694) Checking out files: 52% (4045/7694) Checking out files: 53% (4078/7694) Checking out files: 54% (4155/7694) Checking out files: 55% (4232/7694) Checking out files: 56% (4309/7694) Checking out files: 57% (4386/7694) Checking out files: 58% (4463/7694) Checking out files: 59% (4540/7694) Checking out files: 60% (4617/7694) Checking out files: 61% (4694/7694) Checking out files: 62% (4771/7694) Checking out files: 63% (4848/7694) Checking out files: 63% (4879/7694) Checking out files: 64% (4925/7694) Checking out files: 65% (5002/7694) Checking out files: 66% (5079/7694) Checking out files: 67% (5155/7694) Checking out files: 68% (5232/7694) Checking out files: 69% (5309/7694) Checking out files: 70% (5386/7694) Checking out files: 71% (5463/7694) Checking out files: 72% (5540/7694) Checking out files: 73% (5617/7694) Checking out files: 73% (5688/7694) Checking out files: 74% (5694/7694) Checking out files: 75% (5771/7694) Checking out files: 76% (5848/7694) Checking out files: 77% (5925/7694) Checking out files: 78% (6002/7694) Checking out files: 79% (6079/7694) Checking out files: 80% (6156/7694) Checking out files: 81% (6233/7694) Checking out files: 82% (6310/7694) Checking out files: 83% (6387/7694) Checking out files: 84% (6463/7694) Checking out files: 85% (6540/7694) Checking out files: 86% (6617/7694) Checking out files: 87% (6694/7694) Checking out files: 88% (6771/7694) Checking out files: 89% (6848/7694) Checking out files: 90% (6925/7694) Checking out files: 91% (7002/7694) Checking out files: 92% (7079/7694) Checking out files: 93% (7156/7694) Checking out files: 94% (7233/7694) Checking out files: 95% (7310/7694) Checking out files: 96% (7387/7694) Checking out files: 97% (7464/7694) Checking out files: 97% (7502/7694) Checking out files: 98% (7541/7694) Checking out files: 99% (7618/7694) Checking out files: 100% (7694/7694) Checking out files: 100% (7694/7694), done. | |
| [32;1m$ cp /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/config/*.yaml spack/etc/spack[0;m | |
| [32;1m$ SPACK_ROOT=${PWD}/spack[0;m | |
| [32;1m$ echo "SPACK_ROOT=${SPACK_ROOT}" >> spack_clone_variables.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ spack config --scope site add "config:ccache:true"[0;m | |
| [32;1m$ spack config get config[0;m | |
| config: | |
| install_tree: | |
| projections: | |
| all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| root: $spack/opt/spack | |
| build_jobs: 36 | |
| ccache: true | |
| template_dirs: | |
| - $spack/share/spack/templates | |
| # Locations where different types of modules should be installed. | |
| module_roots: | |
| tcl: $spack/share/spack/modules | |
| lmod: $spack/share/spack/lmod | |
| build_stage: | |
| - $tempdir/$user/spack-stage | |
| - ~/.spack/stage | |
| # - $spack/var/spack/stage | |
| # Directory in which to run tests and store test results. | |
| # Tests will be stored in directories named by date/time and package | |
| # name/hash. | |
| test_stage: ~/.spack/test | |
| source_cache: $spack/var/spack/cache | |
| misc_cache: ~/.spack/cache | |
| connect_timeout: 10 | |
| verify_ssl: true | |
| suppress_gpg_warnings: false | |
| install_missing_compilers: false | |
| checksum: true | |
| dirty: false | |
| build_language: C | |
| locks: true | |
| concretizer: original | |
| db_lock_timeout: 300 | |
| package_lock_timeout: | |
| shared_linking: rpath | |
| allow_sgid: true | |
| debug: false | |
| [32;1m$ echo "SPACK_USE_CCACHE=true" >> spack_clone_variables.env[0;m | |
| [32;1m$ if [[ "${CI_PIPELINE_SOURCE}" == "pipeline" ]]; then[0;m | |
| section_end:1634168766:step_script [0Ksection_start:1634168766:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=237311 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=72831 responseStatus[0;m=201 Created token[0;m=wyjcSmWr | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=237327 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=72831 responseStatus[0;m=201 Created token[0;m=wyjcSmWr | |
| section_end:1634168767:upload_artifacts_on_success [0Ksection_start:1634168767:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1634168768:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1634169339:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1634169339:resolve_secrets [0Ksection_start:1634169339:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor151747686, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 19887, build ref 2ffcc0bd233954f136c937baf23e9593a0be0e8a, job ID 72841 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887 | |
| A slurm job will be created with name GL_J72841_PROD_P112_CP0_C0 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod_p2,prod_p1,interactive | |
| Submitted batch job 2782628 | |
| job state: R | |
| section_end:1634169386:prepare_executor [0Ksection_start:1634169386:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r2i3n6 via bbpv1.epfl.ch... | |
| section_end:1634169387:prepare_script [0Ksection_start:1634169387:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1634169387:get_sources [0Ksection_start:1634169387:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:gpu (72837)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=164960 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=72837 responseStatus[0;m=200 OK token[0;m=6FW_Cmzk | |
| section_end:1634169388:download_artifacts [0Ksection_start:1634169388:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r4i1n18 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20211013-2356 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72837/spack-build/spack-stage-coreneuron-develop-ekzdtgq26p6y5mzmpphbjqbifw32enfk/spack-build-ekzdtgq | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| Start 3: alignment_test | |
| Start 4: queuing_test | |
| Start 5: lfp_test | |
| Start 6: ring_TEST | |
| 1/18 Test #3: alignment_test ......................... Passed 1.45 sec | |
| Start 7: ring_binqueue_TEST | |
| 2/18 Test #2: interleave_info_constructor_test ....... Passed 1.58 sec | |
| 3/18 Test #1: cmd_interface_test ..................... Passed 1.90 sec | |
| Start 8: ring_multisend_TEST | |
| 4/18 Test #4: queuing_test ........................... Passed 2.01 sec | |
| 5/18 Test #5: lfp_test ............................... Passed 2.05 sec | |
| Start 9: ring_spike_buffer_TEST | |
| 6/18 Test #6: ring_TEST .............................. Passed 2.53 sec | |
| Start 10: ring_permute1_TEST | |
| 7/18 Test #7: ring_binqueue_TEST ..................... Passed 12.48 sec | |
| Start 11: ring_permute2_TEST | |
| 8/18 Test #9: ring_spike_buffer_TEST ................. Passed 11.89 sec | |
| Start 12: ring_gap_TEST | |
| 9/18 Test #8: ring_multisend_TEST .................... Passed 12.12 sec | |
| Start 13: ring_gap_binqueue_TEST | |
| 10/18 Test #10: ring_permute1_TEST ..................... Passed 11.48 sec | |
| Start 14: ring_gap_multisend_TEST | |
| 11/18 Test #11: ring_permute2_TEST ..................... Passed 8.76 sec | |
| Start 15: ring_gap_permute1_TEST | |
| 12/18 Test #12: ring_gap_TEST .......................... Passed 13.92 sec | |
| Start 16: ring_gap_permute2_TEST | |
| 13/18 Test #14: ring_gap_multisend_TEST ................ Passed 13.93 sec | |
| Start 17: ring_permute2_cudaInterface_TEST | |
| 14/18 Test #13: ring_gap_binqueue_TEST ................. Passed 14.02 sec | |
| Start 18: ring_gap_permute2_cudaInterface_TEST | |
| 15/18 Test #15: ring_gap_permute1_TEST ................. Passed 9.67 sec | |
| 16/18 Test #16: ring_gap_permute2_TEST ................. Passed 7.78 sec | |
| 17/18 Test #17: ring_permute2_cudaInterface_TEST ....... Passed 8.34 sec | |
| 18/18 Test #18: ring_gap_permute2_cudaInterface_TEST ... Passed 8.29 sec | |
| 100% tests passed, 0 tests failed out of 18 | |
| Total Test time (real) = 36.35 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.8.3 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1634169440:step_script [0Ksection_start:1634169440:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=166615 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=72841 responseStatus[0;m=201 Created token[0;m=h6aiwzQX | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=166647 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=72841 responseStatus[0;m=201 Created token[0;m=h6aiwzQX | |
| section_end:1634169441:upload_artifacts_on_success [0Ksection_start:1634169441:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1634169442:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1634169087:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1634169087:resolve_secrets [0Ksection_start:1634169087:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor342105500, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 19887, build ref 2ffcc0bd233954f136c937baf23e9593a0be0e8a, job ID 72839 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887 | |
| A slurm job will be created with name GL_J72839_PROD_P112_CP0_C0 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job eligible for phase1 and phase2, setting partition=prod_p2,prod_p1 | |
| Submitted batch job 2782625 | |
| job state: R | |
| section_end:1634169129:prepare_executor [0Ksection_start:1634169129:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r4i1n18 via bbpv1.epfl.ch... | |
| section_end:1634169131:prepare_script [0Ksection_start:1634169131:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1634169132:get_sources [0Ksection_start:1634169132:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:intel (72835)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=250719 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=72835 responseStatus[0;m=200 OK token[0;m=hDnkRZi_ | |
| section_end:1634169133:download_artifacts [0Ksection_start:1634169133:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r4i1n18 | |
| Build name: Linux-icpc | |
| Create new tag: 20211013-2352 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72835/spack-build/spack-stage-coreneuron-develop-amiea4vkblpwhetoty6thfkfrdug4p64/spack-build-amiea4v | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| Start 3: alignment_test | |
| Start 4: queuing_test | |
| Start 5: lfp_test | |
| Start 6: ring_TEST | |
| Start 17: reporting_1 | |
| 1/17 Test #6: ring_TEST .......................... Passed 2.10 sec | |
| Start 7: ring_binqueue_TEST | |
| 2/17 Test #17: reporting_1 ........................ Passed 2.24 sec | |
| 3/17 Test #5: lfp_test ........................... Passed 2.60 sec | |
| Start 8: ring_multisend_TEST | |
| 4/17 Test #3: alignment_test ..................... Passed 2.61 sec | |
| 5/17 Test #4: queuing_test ....................... Passed 2.99 sec | |
| Start 9: ring_spike_buffer_TEST | |
| 6/17 Test #2: interleave_info_constructor_test ... Passed 3.00 sec | |
| 7/17 Test #1: cmd_interface_test ................. Passed 3.27 sec | |
| Start 10: ring_permute1_TEST | |
| 8/17 Test #9: ring_spike_buffer_TEST ............. Passed 3.56 sec | |
| Start 11: ring_permute2_TEST | |
| 9/17 Test #10: ring_permute1_TEST ................. Passed 3.63 sec | |
| Start 12: ring_gap_TEST | |
| 10/17 Test #8: ring_multisend_TEST ................ Passed 4.48 sec | |
| Start 13: ring_gap_binqueue_TEST | |
| 11/17 Test #7: ring_binqueue_TEST ................. Passed 5.01 sec | |
| Start 14: ring_gap_multisend_TEST | |
| 12/17 Test #11: ring_permute2_TEST ................. Passed 1.40 sec | |
| Start 15: ring_gap_permute1_TEST | |
| 13/17 Test #12: ring_gap_TEST ...................... Passed 1.24 sec | |
| Start 16: ring_gap_permute2_TEST | |
| 14/17 Test #14: ring_gap_multisend_TEST ............ Passed 2.11 sec | |
| 15/17 Test #13: ring_gap_binqueue_TEST ............. Passed 2.52 sec | |
| 16/17 Test #15: ring_gap_permute1_TEST ............. Passed 2.53 sec | |
| 17/17 Test #16: ring_gap_permute2_TEST ............. Passed 2.35 sec | |
| 100% tests passed, 0 tests failed out of 17 | |
| Total Test time (real) = 10.54 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.8.3 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1634169163:step_script [0Ksection_start:1634169163:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=252459 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=72839 responseStatus[0;m=201 Created token[0;m=PS6DD3Uy | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=252492 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=72839 responseStatus[0;m=201 Created token[0;m=PS6DD3Uy | |
| section_end:1634169164:upload_artifacts_on_success [0Ksection_start:1634169164:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1634169165:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1634169550:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1634169550:resolve_secrets [0Ksection_start:1634169550:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor473061248, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 19887, build ref 2ffcc0bd233954f136c937baf23e9593a0be0e8a, job ID 72840 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887 | |
| A slurm job will be created with name GL_J72840_PROD_P112_CP0_C0 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod_p2,prod_p1,interactive | |
| Submitted batch job 2782697 | |
| job state: R | |
| section_end:1634169625:prepare_executor [0Ksection_start:1634169625:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r2i3n6 via bbpv1.epfl.ch... | |
| section_end:1634169626:prepare_script [0Ksection_start:1634169626:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1634169627:get_sources [0Ksection_start:1634169627:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron+nmodl:gpu (72836)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=167341 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=72836 responseStatus[0;m=200 OK token[0;m=smL3tKom | |
| section_end:1634169628:download_artifacts [0Ksection_start:1634169628:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r4i1n18 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20211014-0000 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72836/spack-build/spack-stage-coreneuron-develop-aoe2ga6salt5qv6vqlldt23jmmxeb6d5/spack-build-aoe2ga6 | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| Start 3: alignment_test | |
| Start 4: queuing_test | |
| Start 5: lfp_test | |
| Start 6: ring_TEST | |
| 1/18 Test #1: cmd_interface_test ..................... Passed 1.07 sec | |
| Start 7: ring_binqueue_TEST | |
| 2/18 Test #2: interleave_info_constructor_test ....... Passed 1.58 sec | |
| 3/18 Test #3: alignment_test ......................... Passed 1.60 sec | |
| Start 8: ring_multisend_TEST | |
| 4/18 Test #5: lfp_test ............................... Passed 1.92 sec | |
| 5/18 Test #4: queuing_test ........................... Passed 1.99 sec | |
| Start 9: ring_spike_buffer_TEST | |
| 6/18 Test #6: ring_TEST .............................. Passed 1.99 sec | |
| Start 10: ring_permute1_TEST | |
| 7/18 Test #7: ring_binqueue_TEST ..................... Passed 8.84 sec | |
| Start 11: ring_permute2_TEST | |
| 8/18 Test #8: ring_multisend_TEST .................... Passed 8.52 sec | |
| Start 12: ring_gap_TEST | |
| 9/18 Test #9: ring_spike_buffer_TEST ................. Passed 9.02 sec | |
| Start 13: ring_gap_binqueue_TEST | |
| 10/18 Test #10: ring_permute1_TEST ..................... Passed 9.07 sec | |
| Start 14: ring_gap_multisend_TEST | |
| 11/18 Test #11: ring_permute2_TEST ..................... Passed 9.31 sec | |
| Start 15: ring_gap_permute1_TEST | |
| 12/18 Test #12: ring_gap_TEST .......................... Passed 9.43 sec | |
| Start 16: ring_gap_permute2_TEST | |
| 13/18 Test #13: ring_gap_binqueue_TEST ................. Passed 11.60 sec | |
| Start 17: ring_permute2_cudaInterface_TEST | |
| 14/18 Test #14: ring_gap_multisend_TEST ................ Passed 11.73 sec | |
| Start 18: ring_gap_permute2_cudaInterface_TEST | |
| 15/18 Test #15: ring_gap_permute1_TEST ................. Passed 6.50 sec | |
| 16/18 Test #16: ring_gap_permute2_TEST ................. Passed 7.13 sec | |
| 17/18 Test #17: ring_permute2_cudaInterface_TEST ....... Passed 6.29 sec | |
| 18/18 Test #18: ring_gap_permute2_cudaInterface_TEST ... Passed 6.33 sec | |
| 100% tests passed, 0 tests failed out of 18 | |
| Total Test time (real) = 29.17 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.8.3 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1634169673:step_script [0Ksection_start:1634169673:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=169040 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=72840 responseStatus[0;m=201 Created token[0;m=Kk2B5FL_ | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=169073 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=72840 responseStatus[0;m=201 Created token[0;m=Kk2B5FL_ | |
| section_end:1634169674:upload_artifacts_on_success [0Ksection_start:1634169674:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1634169675:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1634169443:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1634169443:resolve_secrets [0Ksection_start:1634169443:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor328453424, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 19887, build ref 2ffcc0bd233954f136c937baf23e9593a0be0e8a, job ID 72838 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887 | |
| A slurm job will be created with name GL_J72838_PROD_P112_CP0_C0 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job eligible for phase1 and phase2, setting partition=prod_p2,prod_p1 | |
| Submitted batch job 2782695 | |
| job state: R | |
| section_end:1634169513:prepare_executor [0Ksection_start:1634169513:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r4i1n18 via bbpv1.epfl.ch... | |
| section_end:1634169514:prepare_script [0Ksection_start:1634169514:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1634169515:get_sources [0Ksection_start:1634169515:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron+nmodl:intel (72834)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=259697 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=72834 responseStatus[0;m=200 OK token[0;m=o4F-_51w | |
| section_end:1634169516:download_artifacts [0Ksection_start:1634169516:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r4i1n18 | |
| Build name: Linux-icpc | |
| Create new tag: 20211013-2358 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72834/spack-build/spack-stage-coreneuron-develop-fbjlykb4ys6kgbq2z2zyrw6ufddzw3ts/spack-build-fbjlykb | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| Start 3: alignment_test | |
| Start 4: queuing_test | |
| Start 5: lfp_test | |
| Start 6: ring_TEST | |
| Start 17: reporting_1 | |
| 1/17 Test #6: ring_TEST .......................... Passed 1.60 sec | |
| Start 7: ring_binqueue_TEST | |
| 2/17 Test #17: reporting_1 ........................ Passed 1.66 sec | |
| 3/17 Test #2: interleave_info_constructor_test ... Passed 1.90 sec | |
| Start 8: ring_multisend_TEST | |
| 4/17 Test #1: cmd_interface_test ................. Passed 2.06 sec | |
| 5/17 Test #3: alignment_test ..................... Passed 2.19 sec | |
| Start 9: ring_spike_buffer_TEST | |
| 6/17 Test #5: lfp_test ........................... Passed 2.35 sec | |
| 7/17 Test #4: queuing_test ....................... Passed 2.35 sec | |
| Start 10: ring_permute1_TEST | |
| 8/17 Test #7: ring_binqueue_TEST ................. Passed 3.13 sec | |
| Start 11: ring_permute2_TEST | |
| 9/17 Test #8: ring_multisend_TEST ................ Passed 3.33 sec | |
| Start 12: ring_gap_TEST | |
| 10/17 Test #9: ring_spike_buffer_TEST ............. Passed 3.04 sec | |
| Start 13: ring_gap_binqueue_TEST | |
| 11/17 Test #11: ring_permute2_TEST ................. Passed 0.88 sec | |
| Start 14: ring_gap_multisend_TEST | |
| 12/17 Test #10: ring_permute1_TEST ................. Passed 3.27 sec | |
| Start 15: ring_gap_permute1_TEST | |
| 13/17 Test #12: ring_gap_TEST ...................... Passed 2.32 sec | |
| Start 16: ring_gap_permute2_TEST | |
| 14/17 Test #13: ring_gap_binqueue_TEST ............. Passed 2.81 sec | |
| 15/17 Test #14: ring_gap_multisend_TEST ............ Passed 2.73 sec | |
| 16/17 Test #15: ring_gap_permute1_TEST ............. Passed 3.04 sec | |
| 17/17 Test #16: ring_gap_permute2_TEST ............. Passed 1.12 sec | |
| 100% tests passed, 0 tests failed out of 17 | |
| Total Test time (real) = 8.70 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.8.3 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1634169547:step_script [0Ksection_start:1634169547:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=262136 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=72838 responseStatus[0;m=201 Created token[0;m=8yZAQjuX | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=262175 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=72838 responseStatus[0;m=201 Created token[0;m=8yZAQjuX | |
| section_end:1634169549:upload_artifacts_on_success [0Ksection_start:1634169549:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1634169549:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1634171066:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1634171066:resolve_secrets [0Ksection_start:1634171066:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor288584728, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 19887, build ref 2ffcc0bd233954f136c937baf23e9593a0be0e8a, job ID 72849 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887 | |
| A slurm job will be created with name GL_J72849_PROD_P112_CP2_C9 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod_p2,prod_p1,interactive | |
| Submitted batch job 2782705 | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| section_end:1634171227:prepare_executor [0Ksection_start:1634171227:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r2i3n6 via bbpv1.epfl.ch... | |
| section_end:1634171230:prepare_script [0Ksection_start:1634171230:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1634171231:get_sources [0Ksection_start:1634171231:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:neuron:gpu (72845)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=175236 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=72845 responseStatus[0;m=200 OK token[0;m=wWGRZ-it | |
| section_end:1634171232:download_artifacts [0Ksection_start:1634171232:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r4i1n18 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20211014-0027 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72845/spack-build/spack-stage-neuron-develop-qdta367h6ly225azfnup34o2tpbkhbcb/spack-build-qdta367 | |
| Start 27: external_ringtest::coreneuron_cpu_mpi_offline::preparation | |
| Start 31: external_ringtest::coreneuron_gpu_mpi_offline::preparation | |
| Start 38: testcorenrn_bbcore::coreneuron_gpu_offline::preparation | |
| Start 42: testcorenrn_bbcore::coreneuron_cpu_offline::preparation | |
| Start 48: testcorenrn_deriv::coreneuron_gpu_offline::preparation | |
| Start 52: testcorenrn_deriv::coreneuron_cpu_offline::preparation | |
| 1/135 Test #38: testcorenrn_bbcore::coreneuron_gpu_offline::preparation ............ Passed 2.14 sec | |
| Start 66: testcorenrn_patstim::coreneuron_gpu_offline::preparation | |
| 2/135 Test #42: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............ Passed 2.42 sec | |
| Start 104: testcorenrn_conc::coreneuron_gpu_offline::preparation | |
| 3/135 Test #48: testcorenrn_deriv::coreneuron_gpu_offline::preparation ............. Passed 2.70 sec | |
| Start 108: testcorenrn_conc::coreneuron_cpu_offline::preparation | |
| 4/135 Test #52: testcorenrn_deriv::coreneuron_cpu_offline::preparation ............. Passed 2.93 sec | |
| Start 114: testcorenrn_kin::coreneuron_gpu_offline::preparation | |
| 5/135 Test #104: testcorenrn_conc::coreneuron_gpu_offline::preparation .............. Passed 2.16 sec | |
| Start 118: testcorenrn_kin::coreneuron_cpu_offline::preparation | |
| 6/135 Test #114: testcorenrn_kin::coreneuron_gpu_offline::preparation ............... Passed 1.97 sec | |
| Start 23: external_ringtest::neuron | |
| 7/135 Test #66: testcorenrn_patstim::coreneuron_gpu_offline::preparation ........... Passed 3.06 sec | |
| Start 34: testcorenrn_bbcore::neuron | |
| 8/135 Test #108: testcorenrn_conc::coreneuron_cpu_offline::preparation .............. Passed 2.58 sec | |
| Start 35: testcorenrn_bbcore::coreneuron_gpu_online | |
| 9/135 Test #31: external_ringtest::coreneuron_gpu_mpi_offline::preparation ......... Passed 6.16 sec | |
| Start 58: testcorenrn_gf::coreneuron_gpu_offline::preparation | |
| 10/135 Test #27: external_ringtest::coreneuron_cpu_mpi_offline::preparation ......... Passed 6.17 sec | |
| Start 62: testcorenrn_gf::coreneuron_cpu_offline::preparation | |
| 11/135 Test #118: testcorenrn_kin::coreneuron_cpu_offline::preparation ............... Passed 1.63 sec | |
| Start 36: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate | |
| 12/135 Test #23: external_ringtest::neuron .......................................... Passed 1.51 sec | |
| Start 37: testcorenrn_bbcore::coreneuron_gpu_offline | |
| 13/135 Test #34: testcorenrn_bbcore::neuron ......................................... Passed 1.47 sec | |
| Start 39: testcorenrn_bbcore::coreneuron_cpu_online | |
| 14/135 Test #35: testcorenrn_bbcore::coreneuron_gpu_online .......................... Passed 3.22 sec | |
| Start 40: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate | |
| 15/135 Test #58: testcorenrn_gf::coreneuron_gpu_offline::preparation ................ Passed 5.05 sec | |
| Start 68: testcorenrn_patstim::coreneuron_cpu_offline::preparation | |
| 16/135 Test #62: testcorenrn_gf::coreneuron_cpu_offline::preparation ................ Passed 5.26 sec | |
| Start 74: testcorenrn_vecplay::coreneuron_gpu_offline::preparation | |
| 17/135 Test #37: testcorenrn_bbcore::coreneuron_gpu_offline ......................... Passed 5.72 sec | |
| Start 41: testcorenrn_bbcore::coreneuron_cpu_offline | |
| 18/135 Test #68: testcorenrn_patstim::coreneuron_cpu_offline::preparation ........... Passed 1.63 sec | |
| Start 78: testcorenrn_vecplay::coreneuron_cpu_offline::preparation | |
| 19/135 Test #74: testcorenrn_vecplay::coreneuron_gpu_offline::preparation ........... Passed 1.75 sec | |
| Start 94: testcorenrn_watch::coreneuron_gpu_offline::preparation | |
| 20/135 Test #78: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ........... Passed 1.81 sec | |
| Start 98: testcorenrn_watch::coreneuron_cpu_offline::preparation | |
| 21/135 Test #94: testcorenrn_watch::coreneuron_gpu_offline::preparation ............. Passed 1.77 sec | |
| Start 24: external_ringtest::neuron_mpi | |
| 22/135 Test #41: testcorenrn_bbcore::coreneuron_cpu_offline ......................... Passed 3.95 sec | |
| Start 44: testcorenrn_deriv::neuron | |
| 23/135 Test #39: testcorenrn_bbcore::coreneuron_cpu_online .......................... Passed 9.54 sec | |
| Start 45: testcorenrn_deriv::coreneuron_gpu_online | |
| 24/135 Test #40: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ......... Passed 7.80 sec | |
| Start 46: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate | |
| 25/135 Test #36: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate ......... Passed 10.26 sec | |
| Start 47: testcorenrn_deriv::coreneuron_gpu_offline | |
| 26/135 Test #98: testcorenrn_watch::coreneuron_cpu_offline::preparation ............. Passed 2.26 sec | |
| Start 25: external_ringtest::coreneuron_cpu_mpi | |
| 27/135 Test #44: testcorenrn_deriv::neuron .......................................... Passed 2.03 sec | |
| Start 49: testcorenrn_deriv::coreneuron_cpu_online | |
| 28/135 Test #24: external_ringtest::neuron_mpi ...................................... Passed 3.45 sec | |
| Start 26: external_ringtest::coreneuron_cpu_mpi_offline | |
| 29/135 Test #46: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate .......... Passed 3.90 sec | |
| Start 50: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate | |
| 30/135 Test #26: external_ringtest::coreneuron_cpu_mpi_offline ...................... Passed 4.55 sec | |
| Start 28: external_ringtest::coreneuron_cpu_mpi_threads | |
| 31/135 Test #25: external_ringtest::coreneuron_cpu_mpi .............................. Passed 6.09 sec | |
| Start 29: external_ringtest::coreneuron_gpu_mpi | |
| 32/135 Test #49: testcorenrn_deriv::coreneuron_cpu_online ........................... Passed 6.45 sec | |
| Start 51: testcorenrn_deriv::coreneuron_cpu_offline | |
| 33/135 Test #51: testcorenrn_deriv::coreneuron_cpu_offline .......................... Passed 1.96 sec | |
| Start 65: testcorenrn_patstim::coreneuron_gpu_offline | |
| 34/135 Test #29: external_ringtest::coreneuron_gpu_mpi .............................. Passed 4.00 sec | |
| Start 30: external_ringtest::coreneuron_gpu_mpi_offline | |
| 35/135 Test #28: external_ringtest::coreneuron_cpu_mpi_threads ...................... Passed 7.81 sec | |
| Start 32: external_ringtest::coreneuron_gpu_mpi_threads | |
| 36/135 Test #65: testcorenrn_patstim::coreneuron_gpu_offline ........................ Passed 4.22 sec | |
| Start 100: testcorenrn_conc::neuron | |
| 37/135 Test #100: testcorenrn_conc::neuron ........................................... Passed 1.57 sec | |
| Start 101: testcorenrn_conc::coreneuron_gpu_online | |
| 38/135 Test #50: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate .......... Passed 16.55 sec | |
| Start 102: testcorenrn_conc::coreneuron_gpu_online_psolve_alternate | |
| 39/135 Test #30: external_ringtest::coreneuron_gpu_mpi_offline ...................... Passed 15.78 sec | |
| Start 54: testcorenrn_gf::neuron | |
| 40/135 Test #54: testcorenrn_gf::neuron ............................................. Passed 3.68 sec | |
| Start 55: testcorenrn_gf::coreneuron_gpu_online | |
| 41/135 Test #101: testcorenrn_conc::coreneuron_gpu_online ............................ Passed 16.82 sec | |
| Start 103: testcorenrn_conc::coreneuron_gpu_offline | |
| 42/135 Test #45: testcorenrn_deriv::coreneuron_gpu_online ........................... Passed 33.28 sec | |
| Start 105: testcorenrn_conc::coreneuron_cpu_online | |
| 43/135 Test #32: external_ringtest::coreneuron_gpu_mpi_threads ...................... Passed 19.72 sec | |
| Start 56: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate | |
| 44/135 Test #47: testcorenrn_deriv::coreneuron_gpu_offline .......................... Passed 36.63 sec | |
| Start 106: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate | |
| 45/135 Test #102: testcorenrn_conc::coreneuron_gpu_online_psolve_alternate ........... Passed 17.92 sec | |
| Start 107: testcorenrn_conc::coreneuron_cpu_offline | |
| 46/135 Test #105: testcorenrn_conc::coreneuron_cpu_online ............................ Passed 10.61 sec | |
| Start 110: testcorenrn_kin::neuron | |
| 47/135 Test #103: testcorenrn_conc::coreneuron_gpu_offline ........................... Passed 10.97 sec | |
| Start 111: testcorenrn_kin::coreneuron_gpu_online | |
| 48/135 Test #55: testcorenrn_gf::coreneuron_gpu_online .............................. Passed 14.76 sec | |
| Start 57: testcorenrn_gf::coreneuron_gpu_offline | |
| 49/135 Test #110: testcorenrn_kin::neuron ............................................ Passed 1.78 sec | |
| Start 112: testcorenrn_kin::coreneuron_gpu_online_psolve_alternate | |
| 50/135 Test #107: testcorenrn_conc::coreneuron_cpu_offline ........................... Passed 11.66 sec | |
| Start 113: testcorenrn_kin::coreneuron_gpu_offline | |
| 51/135 Test #106: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ........... Passed 15.61 sec | |
| Start 115: testcorenrn_kin::coreneuron_cpu_online | |
| 52/135 Test #56: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate ............. Passed 22.57 sec | |
| Start 59: testcorenrn_gf::coreneuron_cpu_online | |
| 53/135 Test #111: testcorenrn_kin::coreneuron_gpu_online ............................. Passed 17.26 sec | |
| Start 116: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate | |
| 54/135 Test #112: testcorenrn_kin::coreneuron_gpu_online_psolve_alternate ............ Passed 16.41 sec | |
| Start 117: testcorenrn_kin::coreneuron_cpu_offline | |
| 55/135 Test #57: testcorenrn_gf::coreneuron_gpu_offline ............................. Passed 17.28 sec | |
| Start 60: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate | |
| 56/135 Test #113: testcorenrn_kin::coreneuron_gpu_offline ............................ Passed 14.13 sec | |
| Start 124: channel_benchmark_hippo::neuron | |
| 57/135 Test #115: testcorenrn_kin::coreneuron_cpu_online ............................. Passed 16.09 sec | |
| Start 125: channel_benchmark_hippo::coreneuron_gpu_online | |
| 58/135 Test #59: testcorenrn_gf::coreneuron_cpu_online .............................. Passed 17.87 sec | |
| Start 61: testcorenrn_gf::coreneuron_cpu_offline | |
| 59/135 Test #117: testcorenrn_kin::coreneuron_cpu_offline ............................ Passed 23.42 sec | |
| Start 126: channel_benchmark_hippo::coreneuron_gpu_filemode | |
| 60/135 Test #116: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ............ Passed 24.35 sec | |
| Start 127: channel_benchmark_hippo::coreneuron_cpu_online | |
| 61/135 Test #60: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ............. Passed 30.33 sec | |
| Start 64: testcorenrn_patstim::neuron | |
| 62/135 Test #64: testcorenrn_patstim::neuron ........................................ Passed 3.08 sec | |
| Start 67: testcorenrn_patstim::coreneuron_cpu_offline | |
| 63/135 Test #61: testcorenrn_gf::coreneuron_cpu_offline ............................. Passed 31.32 sec | |
| Start 70: testcorenrn_vecplay::neuron | |
| 64/135 Test #70: testcorenrn_vecplay::neuron ........................................ Passed 3.02 sec | |
| Start 71: testcorenrn_vecplay::coreneuron_gpu_online | |
| 65/135 Test #67: testcorenrn_patstim::coreneuron_cpu_offline ........................ Passed 26.91 sec | |
| Start 72: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate | |
| 66/135 Test #124: channel_benchmark_hippo::neuron .................................... Passed 71.07 sec | |
| Start 128: channel_benchmark_hippo::coreneuron_cpu_filemode | |
| 67/135 Test #71: testcorenrn_vecplay::coreneuron_gpu_online ......................... Passed 46.50 sec | |
| Start 73: testcorenrn_vecplay::coreneuron_gpu_offline | |
| 68/135 Test #72: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate ........ Passed 44.56 sec | |
| Start 75: testcorenrn_vecplay::coreneuron_cpu_online | |
| 69/135 Test #125: channel_benchmark_hippo::coreneuron_gpu_online ..................... Passed 98.80 sec | |
| Start 130: channel_benchmark_sscx::neuron | |
| 70/135 Test #126: channel_benchmark_hippo::coreneuron_gpu_filemode ................... Passed 102.18 sec | |
| Start 131: channel_benchmark_sscx::coreneuron_gpu_online | |
| 71/135 Test #127: channel_benchmark_hippo::coreneuron_cpu_online ..................... Passed 104.60 sec | |
| Start 132: channel_benchmark_sscx::coreneuron_gpu_filemode | |
| 72/135 Test #73: testcorenrn_vecplay::coreneuron_gpu_offline ........................ Passed 36.44 sec | |
| Start 76: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate | |
| 73/135 Test #75: testcorenrn_vecplay::coreneuron_cpu_online ......................... Passed 31.03 sec | |
| Start 77: testcorenrn_vecplay::coreneuron_cpu_offline | |
| 74/135 Test #128: channel_benchmark_hippo::coreneuron_cpu_filemode ................... Passed 73.67 sec | |
| Start 133: channel_benchmark_sscx::coreneuron_cpu_online | |
| 75/135 Test #76: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........ Passed 25.22 sec | |
| Start 90: testcorenrn_watch::neuron | |
| 76/135 Test #77: testcorenrn_vecplay::coreneuron_cpu_offline ........................ Passed 20.42 sec | |
| Start 91: testcorenrn_watch::coreneuron_gpu_online | |
| 77/135 Test #90: testcorenrn_watch::neuron .......................................... Passed 3.00 sec | |
| Start 92: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate | |
| 78/135 Test #130: channel_benchmark_sscx::neuron ..................................... Passed 55.51 sec | |
| Start 134: channel_benchmark_sscx::coreneuron_cpu_filemode | |
| 79/135 Test #91: testcorenrn_watch::coreneuron_gpu_online ........................... Passed 25.37 sec | |
| Start 93: testcorenrn_watch::coreneuron_gpu_offline | |
| 80/135 Test #92: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate .......... Passed 27.76 sec | |
| Start 95: testcorenrn_watch::coreneuron_cpu_online | |
| 81/135 Test #93: testcorenrn_watch::coreneuron_gpu_offline .......................... Passed 14.37 sec | |
| Start 96: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate | |
| 82/135 Test #95: testcorenrn_watch::coreneuron_cpu_online ........................... Passed 16.06 sec | |
| Start 97: testcorenrn_watch::coreneuron_cpu_offline | |
| 83/135 Test #131: channel_benchmark_sscx::coreneuron_gpu_online ...................... Passed 77.41 sec | |
| Start 1: testneuron | |
| 84/135 Test #1: testneuron ......................................................... Passed 0.08 sec | |
| Start 2: ringtest | |
| 85/135 Test #2: ringtest ........................................................... Passed 0.53 sec | |
| Start 3: connect_dend | |
| 86/135 Test #3: connect_dend ....................................................... Passed 0.19 sec | |
| Start 4: pynrn_tests::basic_tests | |
| 87/135 Test #132: channel_benchmark_sscx::coreneuron_gpu_filemode .................... Passed 76.75 sec | |
| Start 5: rxdmod_tests::rxd_tests | |
| 88/135 Test #97: testcorenrn_watch::coreneuron_cpu_offline .......................... Passed 12.27 sec | |
| Start 120: testcorenrn_netstimdirect::direct_netstimdirect | |
| 89/135 Test #96: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate .......... Passed 19.11 sec | |
| Start 121: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate | |
| 90/135 Test #4: pynrn_tests::basic_tests ........................................... Passed 11.81 sec | |
| Start 6: rxdmod_tests::rxd_mpi_tests | |
| 91/135 Test #133: channel_benchmark_sscx::coreneuron_cpu_online ...................... Passed 70.36 sec | |
| Start 7: parallel_tests | |
| 92/135 Test #7: parallel_tests ..................................................... Passed 12.22 sec | |
| Start 8: parallel_partrans | |
| 93/135 Test #8: parallel_partrans .................................................. Passed 2.33 sec | |
| Start 9: parallel_bas | |
| 94/135 Test #134: channel_benchmark_sscx::coreneuron_cpu_filemode .................... Passed 72.94 sec | |
| Start 10: coreneuron_modtests::direct_py | |
| 95/135 Test #9: parallel_bas ....................................................... Passed 7.93 sec | |
| Start 11: coreneuron_modtests::direct_hoc | |
| 96/135 Test #120: testcorenrn_netstimdirect::direct_netstimdirect .................... Passed 25.84 sec | |
| Start 12: coreneuron_modtests::spikes_py | |
| Start 13: coreneuron_modtests::spikes_file_mode_py | |
| 97/135 Test #121: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ... Passed 25.48 sec | |
| Start 14: coreneuron_modtests::fast_imem_py | |
| Start 15: coreneuron_modtests::datareturn_py | |
| 98/135 Test #10: coreneuron_modtests::direct_py ..................................... Passed 7.77 sec | |
| Start 16: coreneuron_modtests::test_units_py | |
| 99/135 Test #14: coreneuron_modtests::fast_imem_py .................................. Passed 2.60 sec | |
| Start 17: coreneuron_modtests::test_netmove_py | |
| 100/135 Test #11: coreneuron_modtests::direct_hoc .................................... Passed 4.76 sec | |
| Start 18: coreneuron_modtests::test_watchrange_py | |
| 101/135 Test #13: coreneuron_modtests::spikes_file_mode_py ........................... Passed 4.81 sec | |
| Start 19: coreneuron_modtests::test_psolve_py | |
| 102/135 Test #12: coreneuron_modtests::spikes_py ..................................... Passed 4.96 sec | |
| Start 20: coreneuron_modtests::test_natrans_py | |
| 103/135 Test #16: coreneuron_modtests::test_units_py ................................. Passed 4.05 sec | |
| Start 33: external_ringtest::compare_results | |
| 104/135 Test #15: coreneuron_modtests::datareturn_py ................................. Passed 4.93 sec | |
| Start 43: testcorenrn_bbcore::compare_results | |
| 105/135 Test #43: testcorenrn_bbcore::compare_results ................................ Passed 1.32 sec | |
| Start 53: testcorenrn_deriv::compare_results | |
| 106/135 Test #33: external_ringtest::compare_results ................................. Passed 2.71 sec | |
| Start 63: testcorenrn_gf::compare_results | |
| 107/135 Test #63: testcorenrn_gf::compare_results .................................... Passed 0.91 sec | |
| Start 69: testcorenrn_patstim::compare_results | |
| 108/135 Test #53: testcorenrn_deriv::compare_results ................................. Passed 2.50 sec | |
| Start 79: testcorenrn_vecplay::compare_results | |
| 109/135 Test #79: testcorenrn_vecplay::compare_results ............................... Passed 0.66 sec | |
| Start 99: testcorenrn_watch::compare_results | |
| 110/135 Test #69: testcorenrn_patstim::compare_results ............................... Passed 1.17 sec | |
| Start 109: testcorenrn_conc::compare_results | |
| 111/135 Test #99: testcorenrn_watch::compare_results ................................. Passed 0.23 sec | |
| Start 119: testcorenrn_kin::compare_results | |
| 112/135 Test #109: testcorenrn_conc::compare_results .................................. Passed 0.31 sec | |
| Start 122: testcorenrn_netstimdirect::compare_results | |
| 113/135 Test #122: testcorenrn_netstimdirect::compare_results ......................... Passed 0.18 sec | |
| Start 123: external_nrntest | |
| 114/135 Test #119: testcorenrn_kin::compare_results ................................... Passed 0.51 sec | |
| Start 129: channel_benchmark_hippo::compare_results | |
| 115/135 Test #129: channel_benchmark_hippo::compare_results ........................... Passed 0.41 sec | |
| Start 135: channel_benchmark_sscx::compare_results | |
| 116/135 Test #135: channel_benchmark_sscx::compare_results ............................ Passed 0.32 sec | |
| 117/135 Test #20: coreneuron_modtests::test_natrans_py ............................... Passed 7.83 sec | |
| Start 21: coreneuron_modtests::spikes_mpi_py | |
| 118/135 Test #19: coreneuron_modtests::test_psolve_py ................................ Passed 7.93 sec | |
| 119/135 Test #17: coreneuron_modtests::test_netmove_py ............................... Passed 9.49 sec | |
| Start 22: coreneuron_modtests::spikes_mpi_file_mode_py | |
| 120/135 Test #18: coreneuron_modtests::test_watchrange_py ............................ Passed 9.35 sec | |
| 121/135 Test #21: coreneuron_modtests::spikes_mpi_py ................................. Passed 5.44 sec | |
| 122/135 Test #22: coreneuron_modtests::spikes_mpi_file_mode_py ....................... Passed 5.74 sec | |
| Start 84: testcorenrn_vecevent::coreneuron_gpu_offline::preparation | |
| 123/135 Test #84: testcorenrn_vecevent::coreneuron_gpu_offline::preparation .......... Passed 101.14 sec | |
| Start 88: testcorenrn_vecevent::coreneuron_cpu_offline::preparation | |
| 124/135 Test #88: testcorenrn_vecevent::coreneuron_cpu_offline::preparation .......... Passed 3.32 sec | |
| Start 80: testcorenrn_vecevent::neuron | |
| 125/135 Test #80: testcorenrn_vecevent::neuron ....................................... Passed 3.10 sec | |
| Start 81: testcorenrn_vecevent::coreneuron_gpu_online | |
| 126/135 Test #81: testcorenrn_vecevent::coreneuron_gpu_online ........................ Passed 9.17 sec | |
| Start 82: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate | |
| 127/135 Test #123: external_nrntest ................................................... Passed 158.51 sec | |
| 128/135 Test #5: rxdmod_tests::rxd_tests ............................................ Passed 262.99 sec | |
| 129/135 Test #82: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate ....... Passed 95.46 sec | |
| Start 83: testcorenrn_vecevent::coreneuron_gpu_offline | |
| 130/135 Test #83: testcorenrn_vecevent::coreneuron_gpu_offline ....................... Passed 14.73 sec | |
| Start 85: testcorenrn_vecevent::coreneuron_cpu_online | |
| 131/135 Test #85: testcorenrn_vecevent::coreneuron_cpu_online ........................ Passed 18.32 sec | |
| Start 86: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate | |
| 132/135 Test #86: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ....... Passed 18.99 sec | |
| Start 87: testcorenrn_vecevent::coreneuron_cpu_offline | |
| 133/135 Test #87: testcorenrn_vecevent::coreneuron_cpu_offline ....................... Passed 12.08 sec | |
| Start 89: testcorenrn_vecevent::compare_results | |
| 134/135 Test #89: testcorenrn_vecevent::compare_results .............................. Passed 0.07 sec | |
| 135/135 Test #6: rxdmod_tests::rxd_mpi_tests ........................................ Passed 343.24 sec | |
| 100% tests passed, 0 tests failed out of 135 | |
| Total Test time (real) = 637.24 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.8.3 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1634171888:step_script [0Ksection_start:1634171888:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=189031 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=72849 responseStatus[0;m=201 Created token[0;m=y5iCeafa | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=189065 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=72849 responseStatus[0;m=201 Created token[0;m=y5iCeafa | |
| section_end:1634171889:upload_artifacts_on_success [0Ksection_start:1634171889:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1634171889:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1634170256:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1634170256:resolve_secrets [0Ksection_start:1634170256:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor050160702, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 19887, build ref 2ffcc0bd233954f136c937baf23e9593a0be0e8a, job ID 72847 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887 | |
| A slurm job will be created with name GL_J72847_PROD_P112_CP1_C1 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job eligible for phase1 and phase2, setting partition=prod_p2,prod_p1 | |
| Submitted batch job 2782702 | |
| job state: R | |
| section_end:1634170410:prepare_executor [0Ksection_start:1634170410:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r4i1n18 via bbpv1.epfl.ch... | |
| section_end:1634170412:prepare_script [0Ksection_start:1634170412:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1634170413:get_sources [0Ksection_start:1634170413:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:neuron:intel (72843)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=3541 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=72843 responseStatus[0;m=200 OK token[0;m=vy3qBSwg | |
| section_end:1634170414:download_artifacts [0Ksection_start:1634170414:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r4i1n18 | |
| Build name: Linux-icpc | |
| Create new tag: 20211014-0014 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72843/spack-build/spack-stage-neuron-develop-l2cuclt2wvuiw4s54hywewweoywsqlpu/spack-build-l2cuclt | |
| Start 28: external_ringtest::coreneuron_cpu_mpi_offline::preparation | |
| Start 35: testcorenrn_bbcore::coreneuron_cpu_offline::preparation | |
| Start 41: testcorenrn_deriv::coreneuron_cpu_offline::preparation | |
| Start 47: testcorenrn_gf::coreneuron_cpu_offline::preparation | |
| Start 51: testcorenrn_patstim::coreneuron_cpu_offline::preparation | |
| 1/94 Test #41: testcorenrn_deriv::coreneuron_cpu_offline::preparation ............. Passed 3.12 sec | |
| Start 75: testcorenrn_conc::coreneuron_cpu_offline::preparation | |
| 2/94 Test #35: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............ Passed 3.55 sec | |
| Start 81: testcorenrn_kin::coreneuron_cpu_offline::preparation | |
| 3/94 Test #47: testcorenrn_gf::coreneuron_cpu_offline::preparation ................ Passed 3.94 sec | |
| Start 57: testcorenrn_vecplay::coreneuron_cpu_offline::preparation | |
| 4/94 Test #51: testcorenrn_patstim::coreneuron_cpu_offline::preparation ........... Passed 4.18 sec | |
| Start 69: testcorenrn_watch::coreneuron_cpu_offline::preparation | |
| 5/94 Test #28: external_ringtest::coreneuron_cpu_mpi_offline::preparation ......... Passed 5.75 sec | |
| Start 24: external_ringtest::neuron | |
| Start 31: testcorenrn_bbcore::neuron | |
| 6/94 Test #75: testcorenrn_conc::coreneuron_cpu_offline::preparation .............. Passed 3.09 sec | |
| Start 32: testcorenrn_bbcore::coreneuron_cpu_online | |
| 7/94 Test #81: testcorenrn_kin::coreneuron_cpu_offline::preparation ............... Passed 3.01 sec | |
| Start 33: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate | |
| 8/94 Test #57: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ........... Passed 3.52 sec | |
| Start 25: external_ringtest::neuron_mpi | |
| 9/94 Test #69: testcorenrn_watch::coreneuron_cpu_offline::preparation ............. Passed 3.82 sec | |
| Start 26: external_ringtest::coreneuron_cpu_mpi | |
| 10/94 Test #31: testcorenrn_bbcore::neuron ......................................... Passed 3.23 sec | |
| Start 34: testcorenrn_bbcore::coreneuron_cpu_offline | |
| 11/94 Test #32: testcorenrn_bbcore::coreneuron_cpu_online .......................... Passed 3.72 sec | |
| Start 37: testcorenrn_deriv::neuron | |
| 12/94 Test #33: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ......... Passed 4.14 sec | |
| Start 38: testcorenrn_deriv::coreneuron_cpu_online | |
| 13/94 Test #24: external_ringtest::neuron .......................................... Passed 6.05 sec | |
| Start 39: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate | |
| 14/94 Test #34: testcorenrn_bbcore::coreneuron_cpu_offline ......................... Passed 2.83 sec | |
| Start 40: testcorenrn_deriv::coreneuron_cpu_offline | |
| 15/94 Test #25: external_ringtest::neuron_mpi ...................................... Passed 5.56 sec | |
| Start 27: external_ringtest::coreneuron_cpu_mpi_offline | |
| 16/94 Test #40: testcorenrn_deriv::coreneuron_cpu_offline .......................... Passed 3.24 sec | |
| Start 71: testcorenrn_conc::neuron | |
| 17/94 Test #37: testcorenrn_deriv::neuron .......................................... Passed 6.17 sec | |
| Start 72: testcorenrn_conc::coreneuron_cpu_online | |
| 18/94 Test #26: external_ringtest::coreneuron_cpu_mpi .............................. Passed 8.28 sec | |
| Start 29: external_ringtest::coreneuron_cpu_mpi_threads | |
| 19/94 Test #38: testcorenrn_deriv::coreneuron_cpu_online ........................... Passed 6.78 sec | |
| Start 73: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate | |
| 20/94 Test #27: external_ringtest::coreneuron_cpu_mpi_offline ...................... Passed 4.59 sec | |
| Start 43: testcorenrn_gf::neuron | |
| 21/94 Test #39: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate .......... Passed 6.21 sec | |
| Start 74: testcorenrn_conc::coreneuron_cpu_offline | |
| 22/94 Test #71: testcorenrn_conc::neuron ........................................... Passed 3.66 sec | |
| Start 77: testcorenrn_kin::neuron | |
| 23/94 Test #72: testcorenrn_conc::coreneuron_cpu_online ............................ Passed 3.76 sec | |
| Start 78: testcorenrn_kin::coreneuron_cpu_online | |
| 24/94 Test #74: testcorenrn_conc::coreneuron_cpu_offline ........................... Passed 3.58 sec | |
| Start 79: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate | |
| 25/94 Test #43: testcorenrn_gf::neuron ............................................. Passed 14.29 sec | |
| Start 44: testcorenrn_gf::coreneuron_cpu_online | |
| 26/94 Test #77: testcorenrn_kin::neuron ............................................ Passed 15.83 sec | |
| Start 80: testcorenrn_kin::coreneuron_cpu_offline | |
| 27/94 Test #29: external_ringtest::coreneuron_cpu_mpi_threads ...................... Passed 18.35 sec | |
| Start 45: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate | |
| 28/94 Test #73: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ........... Passed 17.83 sec | |
| Start 87: channel_benchmark_hippo::neuron | |
| 29/94 Test #79: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ............ Passed 14.07 sec | |
| Start 88: channel_benchmark_hippo::coreneuron_cpu_online | |
| 30/94 Test #78: testcorenrn_kin::coreneuron_cpu_online ............................. Passed 15.82 sec | |
| Start 89: channel_benchmark_hippo::coreneuron_cpu_filemode | |
| 31/94 Test #80: testcorenrn_kin::coreneuron_cpu_offline ............................ Passed 2.18 sec | |
| Start 91: channel_benchmark_sscx::neuron | |
| 32/94 Test #44: testcorenrn_gf::coreneuron_cpu_online .............................. Passed 7.09 sec | |
| Start 46: testcorenrn_gf::coreneuron_cpu_offline | |
| 33/94 Test #46: testcorenrn_gf::coreneuron_cpu_offline ............................. Passed 6.67 sec | |
| Start 49: testcorenrn_patstim::neuron | |
| 34/94 Test #45: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ............. Passed 14.01 sec | |
| Start 50: testcorenrn_patstim::coreneuron_cpu_offline | |
| 35/94 Test #50: testcorenrn_patstim::coreneuron_cpu_offline ........................ Passed 5.21 sec | |
| Start 53: testcorenrn_vecplay::neuron | |
| 36/94 Test #49: testcorenrn_patstim::neuron ........................................ Passed 12.53 sec | |
| Start 54: testcorenrn_vecplay::coreneuron_cpu_online | |
| 37/94 Test #53: testcorenrn_vecplay::neuron ........................................ Passed 17.41 sec | |
| Start 55: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate | |
| 38/94 Test #54: testcorenrn_vecplay::coreneuron_cpu_online ......................... Passed 53.98 sec | |
| Start 56: testcorenrn_vecplay::coreneuron_cpu_offline | |
| 39/94 Test #56: testcorenrn_vecplay::coreneuron_cpu_offline ........................ Passed 5.31 sec | |
| Start 65: testcorenrn_watch::neuron | |
| 40/94 Test #87: channel_benchmark_hippo::neuron .................................... Passed 82.29 sec | |
| Start 92: channel_benchmark_sscx::coreneuron_cpu_online | |
| 41/94 Test #89: channel_benchmark_hippo::coreneuron_cpu_filemode ................... Passed 93.66 sec | |
| Start 93: channel_benchmark_sscx::coreneuron_cpu_filemode | |
| 42/94 Test #91: channel_benchmark_sscx::neuron ..................................... Passed 93.83 sec | |
| Start 1: testneuron | |
| 43/94 Test #1: testneuron ......................................................... Passed 1.75 sec | |
| Start 2: ringtest | |
| 44/94 Test #55: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........ Passed 62.35 sec | |
| Start 66: testcorenrn_watch::coreneuron_cpu_online | |
| 45/94 Test #88: channel_benchmark_hippo::coreneuron_cpu_online ..................... Passed 98.75 sec | |
| Start 3: connect_dend | |
| 46/94 Test #65: testcorenrn_watch::neuron .......................................... Passed 17.18 sec | |
| Start 67: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate | |
| 47/94 Test #2: ringtest ........................................................... Passed 3.08 sec | |
| Start 4: pynrn_tests::basic_tests | |
| 48/94 Test #3: connect_dend ....................................................... Passed 3.06 sec | |
| Start 5: rxdmod_tests::rxd_tests | |
| 49/94 Test #92: channel_benchmark_sscx::coreneuron_cpu_online ...................... Passed 50.23 sec | |
| Start 6: rxdmod_tests::rxd_mpi_tests | |
| 50/94 Test #93: channel_benchmark_sscx::coreneuron_cpu_filemode .................... Passed 47.66 sec | |
| Start 7: parallel_tests | |
| 51/94 Test #66: testcorenrn_watch::coreneuron_cpu_online ........................... Passed 46.52 sec | |
| Start 68: testcorenrn_watch::coreneuron_cpu_offline | |
| 52/94 Test #67: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate .......... Passed 45.85 sec | |
| Start 83: testcorenrn_netstimdirect::direct_netstimdirect | |
| 53/94 Test #4: pynrn_tests::basic_tests ........................................... Passed 47.11 sec | |
| Start 8: parallel_partrans | |
| 54/94 Test #68: testcorenrn_watch::coreneuron_cpu_offline .......................... Passed 2.50 sec | |
| Start 84: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate | |
| 55/94 Test #7: parallel_tests ..................................................... Passed 10.21 sec | |
| Start 9: parallel_bas | |
| 56/94 Test #83: testcorenrn_netstimdirect::direct_netstimdirect .................... Passed 8.26 sec | |
| Start 10: coreneuron_modtests::direct_py | |
| Start 11: coreneuron_modtests::direct_hoc | |
| 57/94 Test #8: parallel_partrans .................................................. Passed 6.77 sec | |
| Start 12: coreneuron_modtests::spikes_py | |
| 58/94 Test #11: coreneuron_modtests::direct_hoc .................................... Passed 1.99 sec | |
| Start 13: coreneuron_modtests::spikes_file_mode_py | |
| 59/94 Test #84: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ... Passed 8.35 sec | |
| Start 14: coreneuron_modtests::fornetcon_py | |
| Start 15: coreneuron_modtests::fast_imem_py | |
| 60/94 Test #10: coreneuron_modtests::direct_py ..................................... Passed 10.99 sec | |
| Start 16: coreneuron_modtests::datareturn_py | |
| 61/94 Test #12: coreneuron_modtests::spikes_py ..................................... Passed 10.92 sec | |
| Start 17: coreneuron_modtests::test_units_py | |
| 62/94 Test #15: coreneuron_modtests::fast_imem_py .................................. Passed 13.90 sec | |
| Start 18: coreneuron_modtests::test_netmove_py | |
| 63/94 Test #13: coreneuron_modtests::spikes_file_mode_py ........................... Passed 14.15 sec | |
| Start 19: coreneuron_modtests::test_watchrange_py | |
| 64/94 Test #14: coreneuron_modtests::fornetcon_py .................................. Passed 14.12 sec | |
| Start 20: coreneuron_modtests::test_psolve_py | |
| 65/94 Test #9: parallel_bas ....................................................... Passed 21.72 sec | |
| Start 21: coreneuron_modtests::test_natrans_py | |
| 66/94 Test #17: coreneuron_modtests::test_units_py ................................. Passed 9.89 sec | |
| Start 30: external_ringtest::compare_results | |
| 67/94 Test #30: external_ringtest::compare_results ................................. Passed 1.18 sec | |
| Start 36: testcorenrn_bbcore::compare_results | |
| 68/94 Test #36: testcorenrn_bbcore::compare_results ................................ Passed 0.92 sec | |
| Start 42: testcorenrn_deriv::compare_results | |
| 69/94 Test #16: coreneuron_modtests::datareturn_py ................................. Passed 12.48 sec | |
| Start 48: testcorenrn_gf::compare_results | |
| 70/94 Test #48: testcorenrn_gf::compare_results .................................... Passed 1.38 sec | |
| Start 52: testcorenrn_patstim::compare_results | |
| 71/94 Test #42: testcorenrn_deriv::compare_results ................................. Passed 2.30 sec | |
| Start 58: testcorenrn_vecplay::compare_results | |
| 72/94 Test #58: testcorenrn_vecplay::compare_results ............................... Passed 0.42 sec | |
| Start 70: testcorenrn_watch::compare_results | |
| 73/94 Test #19: coreneuron_modtests::test_watchrange_py ............................ Passed 10.30 sec | |
| Start 76: testcorenrn_conc::compare_results | |
| 74/94 Test #52: testcorenrn_patstim::compare_results ............................... Passed 1.77 sec | |
| Start 82: testcorenrn_kin::compare_results | |
| 75/94 Test #76: testcorenrn_conc::compare_results .................................. Passed 0.46 sec | |
| Start 85: testcorenrn_netstimdirect::compare_results | |
| 76/94 Test #70: testcorenrn_watch::compare_results ................................. Passed 1.31 sec | |
| Start 86: external_nrntest | |
| 77/94 Test #85: testcorenrn_netstimdirect::compare_results ......................... Passed 1.36 sec | |
| Start 90: channel_benchmark_hippo::compare_results | |
| 78/94 Test #82: testcorenrn_kin::compare_results ................................... Passed 1.78 sec | |
| Start 94: channel_benchmark_sscx::compare_results | |
| 79/94 Test #20: coreneuron_modtests::test_psolve_py ................................ Passed 12.22 sec | |
| 80/94 Test #90: channel_benchmark_hippo::compare_results ........................... Passed 0.37 sec | |
| Start 22: coreneuron_modtests::spikes_mpi_py | |
| 81/94 Test #18: coreneuron_modtests::test_netmove_py ............................... Passed 12.86 sec | |
| 82/94 Test #94: channel_benchmark_sscx::compare_results ............................ Passed 0.81 sec | |
| Start 23: coreneuron_modtests::spikes_mpi_file_mode_py | |
| 83/94 Test #21: coreneuron_modtests::test_natrans_py ............................... Passed 11.81 sec | |
| 84/94 Test #22: coreneuron_modtests::spikes_mpi_py ................................. Passed 8.53 sec | |
| 85/94 Test #23: coreneuron_modtests::spikes_mpi_file_mode_py ....................... Passed 8.65 sec | |
| Start 63: testcorenrn_vecevent::coreneuron_cpu_offline::preparation | |
| 86/94 Test #63: testcorenrn_vecevent::coreneuron_cpu_offline::preparation .......... Passed 3.62 sec | |
| Start 59: testcorenrn_vecevent::neuron | |
| 87/94 Test #59: testcorenrn_vecevent::neuron ....................................... Passed 4.79 sec | |
| Start 60: testcorenrn_vecevent::coreneuron_cpu_online | |
| 88/94 Test #60: testcorenrn_vecevent::coreneuron_cpu_online ........................ Passed 7.91 sec | |
| Start 61: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate | |
| 89/94 Test #61: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ....... Passed 9.36 sec | |
| Start 62: testcorenrn_vecevent::coreneuron_cpu_offline | |
| 90/94 Test #62: testcorenrn_vecevent::coreneuron_cpu_offline ....................... Passed 2.85 sec | |
| Start 64: testcorenrn_vecevent::compare_results | |
| 91/94 Test #64: testcorenrn_vecevent::compare_results .............................. Passed 0.64 sec | |
| 92/94 Test #86: external_nrntest ................................................... Passed 114.65 sec | |
| 93/94 Test #5: rxdmod_tests::rxd_tests ............................................ Passed 278.86 sec | |
| 94/94 Test #6: rxdmod_tests::rxd_mpi_tests ........................................ Passed 254.46 sec | |
| 100% tests passed, 0 tests failed out of 94 | |
| Total Test time (real) = 422.41 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.8.3 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1634170870:step_script [0Ksection_start:1634170870:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=21688 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=72847 responseStatus[0;m=201 Created token[0;m=UYRTqaYq | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=21727 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=72847 responseStatus[0;m=201 Created token[0;m=UYRTqaYq | |
| section_end:1634170871:upload_artifacts_on_success [0Ksection_start:1634170871:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1634170872:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1634170872:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1634170872:resolve_secrets [0Ksection_start:1634170872:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor247042129, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 19887, build ref 2ffcc0bd233954f136c937baf23e9593a0be0e8a, job ID 72848 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887 | |
| A slurm job will be created with name GL_J72848_PROD_P112_CP1_C1 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod_p2,prod_p1,interactive | |
| Submitted batch job 2782704 | |
| job state: R | |
| section_end:1634171021:prepare_executor [0Ksection_start:1634171021:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r2i3n6 via bbpv1.epfl.ch... | |
| section_end:1634171022:prepare_script [0Ksection_start:1634171022:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1634171023:get_sources [0Ksection_start:1634171023:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:neuron+nmodl:gpu (72844)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=171901 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=72844 responseStatus[0;m=200 OK token[0;m=a1xqLs-H | |
| section_end:1634171024:download_artifacts [0Ksection_start:1634171024:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r4i1n18 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20211014-0024 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72844/spack-build/spack-stage-neuron-develop-o6xo3erzdudo5r5hse7yyvqm2vvvwzqt/spack-build-o6xo3er | |
| Start 27: external_ringtest::coreneuron_cpu_mpi_offline::preparation | |
| Start 31: external_ringtest::coreneuron_gpu_mpi_offline::preparation | |
| Start 38: testcorenrn_bbcore::coreneuron_gpu_offline::preparation | |
| Start 42: testcorenrn_bbcore::coreneuron_cpu_offline::preparation | |
| Start 48: testcorenrn_deriv::coreneuron_gpu_offline::preparation | |
| Start 52: testcorenrn_deriv::coreneuron_cpu_offline::preparation | |
| 1/115 Test #52: testcorenrn_deriv::coreneuron_cpu_offline::preparation ............. Passed 2.36 sec | |
| Start 66: testcorenrn_patstim::coreneuron_gpu_offline::preparation | |
| 2/115 Test #38: testcorenrn_bbcore::coreneuron_gpu_offline::preparation ............ Passed 2.44 sec | |
| Start 23: external_ringtest::neuron | |
| 3/115 Test #48: testcorenrn_deriv::coreneuron_gpu_offline::preparation ............. Passed 2.45 sec | |
| Start 34: testcorenrn_bbcore::neuron | |
| 4/115 Test #42: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............ Passed 2.79 sec | |
| Start 35: testcorenrn_bbcore::coreneuron_gpu_online | |
| 5/115 Test #27: external_ringtest::coreneuron_cpu_mpi_offline::preparation ......... Passed 4.22 sec | |
| Start 58: testcorenrn_gf::coreneuron_gpu_offline::preparation | |
| 6/115 Test #66: testcorenrn_patstim::coreneuron_gpu_offline::preparation ........... Passed 1.90 sec | |
| Start 36: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate | |
| 7/115 Test #34: testcorenrn_bbcore::neuron ......................................... Passed 1.86 sec | |
| Start 37: testcorenrn_bbcore::coreneuron_gpu_offline | |
| 8/115 Test #31: external_ringtest::coreneuron_gpu_mpi_offline::preparation ......... Passed 4.51 sec | |
| Start 62: testcorenrn_gf::coreneuron_cpu_offline::preparation | |
| 9/115 Test #23: external_ringtest::neuron .......................................... Passed 2.25 sec | |
| Start 39: testcorenrn_bbcore::coreneuron_cpu_online | |
| 10/115 Test #35: testcorenrn_bbcore::coreneuron_gpu_online .......................... Passed 3.52 sec | |
| Start 40: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate | |
| 11/115 Test #58: testcorenrn_gf::coreneuron_gpu_offline::preparation ................ Passed 2.48 sec | |
| Start 68: testcorenrn_patstim::coreneuron_cpu_offline::preparation | |
| 12/115 Test #62: testcorenrn_gf::coreneuron_cpu_offline::preparation ................ Passed 2.69 sec | |
| Start 74: testcorenrn_vecplay::coreneuron_gpu_offline::preparation | |
| 13/115 Test #37: testcorenrn_bbcore::coreneuron_gpu_offline ......................... Passed 3.34 sec | |
| Start 41: testcorenrn_bbcore::coreneuron_cpu_offline | |
| 14/115 Test #39: testcorenrn_bbcore::coreneuron_cpu_online .......................... Passed 3.53 sec | |
| Start 44: testcorenrn_deriv::neuron | |
| 15/115 Test #68: testcorenrn_patstim::coreneuron_cpu_offline::preparation ........... Passed 2.24 sec | |
| Start 78: testcorenrn_vecplay::coreneuron_cpu_offline::preparation | |
| 16/115 Test #36: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate ......... Passed 4.73 sec | |
| Start 45: testcorenrn_deriv::coreneuron_gpu_online | |
| 17/115 Test #41: testcorenrn_bbcore::coreneuron_cpu_offline ......................... Passed 2.03 sec | |
| Start 46: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate | |
| 18/115 Test #40: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ......... Passed 3.58 sec | |
| Start 47: testcorenrn_deriv::coreneuron_gpu_offline | |
| 19/115 Test #74: testcorenrn_vecplay::coreneuron_gpu_offline::preparation ........... Passed 3.32 sec | |
| Start 94: testcorenrn_watch::coreneuron_gpu_offline::preparation | |
| 20/115 Test #44: testcorenrn_deriv::neuron .......................................... Passed 2.54 sec | |
| Start 49: testcorenrn_deriv::coreneuron_cpu_online | |
| 21/115 Test #78: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ........... Passed 1.89 sec | |
| Start 98: testcorenrn_watch::coreneuron_cpu_offline::preparation | |
| 22/115 Test #94: testcorenrn_watch::coreneuron_gpu_offline::preparation ............. Passed 2.81 sec | |
| Start 24: external_ringtest::neuron_mpi | |
| 23/115 Test #98: testcorenrn_watch::coreneuron_cpu_offline::preparation ............. Passed 2.88 sec | |
| Start 25: external_ringtest::coreneuron_cpu_mpi | |
| 24/115 Test #47: testcorenrn_deriv::coreneuron_gpu_offline .......................... Passed 4.66 sec | |
| Start 50: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate | |
| 25/115 Test #45: testcorenrn_deriv::coreneuron_gpu_online ........................... Passed 5.83 sec | |
| Start 51: testcorenrn_deriv::coreneuron_cpu_offline | |
| 26/115 Test #49: testcorenrn_deriv::coreneuron_cpu_online ........................... Passed 4.32 sec | |
| Start 65: testcorenrn_patstim::coreneuron_gpu_offline | |
| 27/115 Test #46: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate .......... Passed 6.38 sec | |
| Start 104: channel_benchmark_hippo::neuron | |
| 28/115 Test #51: testcorenrn_deriv::coreneuron_cpu_offline .......................... Passed 2.66 sec | |
| Start 105: channel_benchmark_hippo::coreneuron_gpu_online | |
| 29/115 Test #50: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate .......... Passed 4.60 sec | |
| Start 106: channel_benchmark_hippo::coreneuron_gpu_filemode | |
| 30/115 Test #65: testcorenrn_patstim::coreneuron_gpu_offline ........................ Passed 4.99 sec | |
| Start 107: channel_benchmark_hippo::coreneuron_cpu_online | |
| 31/115 Test #24: external_ringtest::neuron_mpi ...................................... Passed 7.50 sec | |
| Start 26: external_ringtest::coreneuron_cpu_mpi_offline | |
| 32/115 Test #25: external_ringtest::coreneuron_cpu_mpi .............................. Passed 13.46 sec | |
| Start 28: external_ringtest::coreneuron_cpu_mpi_threads | |
| 33/115 Test #26: external_ringtest::coreneuron_cpu_mpi_offline ...................... Passed 10.61 sec | |
| Start 29: external_ringtest::coreneuron_gpu_mpi | |
| 34/115 Test #28: external_ringtest::coreneuron_cpu_mpi_threads ...................... Passed 15.98 sec | |
| Start 30: external_ringtest::coreneuron_gpu_mpi_offline | |
| 35/115 Test #29: external_ringtest::coreneuron_gpu_mpi .............................. Passed 20.61 sec | |
| Start 32: external_ringtest::coreneuron_gpu_mpi_threads | |
| 36/115 Test #30: external_ringtest::coreneuron_gpu_mpi_offline ...................... Passed 21.02 sec | |
| Start 54: testcorenrn_gf::neuron | |
| 37/115 Test #105: channel_benchmark_hippo::coreneuron_gpu_online ..................... Passed 89.19 sec | |
| Start 108: channel_benchmark_hippo::coreneuron_cpu_filemode | |
| 38/115 Test #106: channel_benchmark_hippo::coreneuron_gpu_filemode ................... Passed 89.52 sec | |
| Start 110: channel_benchmark_sscx::neuron | |
| 39/115 Test #107: channel_benchmark_hippo::coreneuron_cpu_online ..................... Passed 92.79 sec | |
| Start 111: channel_benchmark_sscx::coreneuron_gpu_online | |
| 40/115 Test #104: channel_benchmark_hippo::neuron .................................... Passed 99.10 sec | |
| Start 112: channel_benchmark_sscx::coreneuron_gpu_filemode | |
| 41/115 Test #32: external_ringtest::coreneuron_gpu_mpi_threads ...................... Passed 111.04 sec | |
| Start 55: testcorenrn_gf::coreneuron_gpu_online | |
| 42/115 Test #54: testcorenrn_gf::neuron ............................................. Passed 111.16 sec | |
| Start 56: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate | |
| 43/115 Test #55: testcorenrn_gf::coreneuron_gpu_online .............................. Passed 23.44 sec | |
| Start 57: testcorenrn_gf::coreneuron_gpu_offline | |
| 44/115 Test #110: channel_benchmark_sscx::neuron ..................................... Passed 87.56 sec | |
| Start 113: channel_benchmark_sscx::coreneuron_cpu_online | |
| 45/115 Test #111: channel_benchmark_sscx::coreneuron_gpu_online ...................... Passed 83.42 sec | |
| Start 114: channel_benchmark_sscx::coreneuron_cpu_filemode | |
| 46/115 Test #108: channel_benchmark_hippo::coreneuron_cpu_filemode ................... Passed 89.72 sec | |
| Start 1: testneuron | |
| 47/115 Test #1: testneuron ......................................................... Passed 0.09 sec | |
| Start 2: ringtest | |
| 48/115 Test #56: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate ............. Passed 21.32 sec | |
| Start 59: testcorenrn_gf::coreneuron_cpu_online | |
| 49/115 Test #2: ringtest ........................................................... Passed 0.33 sec | |
| Start 3: connect_dend | |
| 50/115 Test #3: connect_dend ....................................................... Passed 0.27 sec | |
| Start 4: pynrn_tests::basic_tests | |
| 51/115 Test #112: channel_benchmark_sscx::coreneuron_gpu_filemode .................... Passed 85.86 sec | |
| Start 5: rxdmod_tests::rxd_tests | |
| 52/115 Test #57: testcorenrn_gf::coreneuron_gpu_offline ............................. Passed 16.43 sec | |
| Start 60: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate | |
| 53/115 Test #59: testcorenrn_gf::coreneuron_cpu_online .............................. Passed 9.65 sec | |
| Start 61: testcorenrn_gf::coreneuron_cpu_offline | |
| 54/115 Test #4: pynrn_tests::basic_tests ........................................... Passed 12.11 sec | |
| Start 6: rxdmod_tests::rxd_mpi_tests | |
| 55/115 Test #61: testcorenrn_gf::coreneuron_cpu_offline ............................. Passed 8.69 sec | |
| Start 64: testcorenrn_patstim::neuron | |
| 56/115 Test #60: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ............. Passed 13.48 sec | |
| Start 67: testcorenrn_patstim::coreneuron_cpu_offline | |
| 57/115 Test #64: testcorenrn_patstim::neuron ........................................ Passed 5.68 sec | |
| Start 70: testcorenrn_vecplay::neuron | |
| 58/115 Test #70: testcorenrn_vecplay::neuron ........................................ Passed 2.60 sec | |
| Start 71: testcorenrn_vecplay::coreneuron_gpu_online | |
| 59/115 Test #67: testcorenrn_patstim::coreneuron_cpu_offline ........................ Passed 8.63 sec | |
| Start 72: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate | |
| 60/115 Test #72: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate ........ Passed 28.17 sec | |
| Start 73: testcorenrn_vecplay::coreneuron_gpu_offline | |
| 61/115 Test #114: channel_benchmark_sscx::coreneuron_cpu_filemode .................... Passed 63.47 sec | |
| Start 7: parallel_tests | |
| 62/115 Test #113: channel_benchmark_sscx::coreneuron_cpu_online ...................... Passed 65.53 sec | |
| Start 8: parallel_partrans | |
| 63/115 Test #71: testcorenrn_vecplay::coreneuron_gpu_online ......................... Passed 40.98 sec | |
| Start 75: testcorenrn_vecplay::coreneuron_cpu_online | |
| 64/115 Test #7: parallel_tests ..................................................... Passed 5.50 sec | |
| Start 9: parallel_bas | |
| 65/115 Test #8: parallel_partrans .................................................. Passed 3.62 sec | |
| Start 10: coreneuron_modtests::direct_py | |
| 66/115 Test #73: testcorenrn_vecplay::coreneuron_gpu_offline ........................ Passed 20.81 sec | |
| Start 76: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate | |
| 67/115 Test #9: parallel_bas ....................................................... Passed 10.09 sec | |
| Start 11: coreneuron_modtests::direct_hoc | |
| 68/115 Test #10: coreneuron_modtests::direct_py ..................................... Passed 18.34 sec | |
| Start 12: coreneuron_modtests::spikes_py | |
| 69/115 Test #75: testcorenrn_vecplay::coreneuron_cpu_online ......................... Passed 20.53 sec | |
| Start 77: testcorenrn_vecplay::coreneuron_cpu_offline | |
| 70/115 Test #11: coreneuron_modtests::direct_hoc .................................... Passed 14.70 sec | |
| Start 13: coreneuron_modtests::spikes_file_mode_py | |
| 71/115 Test #76: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........ Passed 16.54 sec | |
| Start 90: testcorenrn_watch::neuron | |
| 72/115 Test #90: testcorenrn_watch::neuron .......................................... Passed 2.14 sec | |
| Start 91: testcorenrn_watch::coreneuron_gpu_online | |
| 73/115 Test #12: coreneuron_modtests::spikes_py ..................................... Passed 17.64 sec | |
| Start 14: coreneuron_modtests::fast_imem_py | |
| 74/115 Test #77: testcorenrn_vecplay::coreneuron_cpu_offline ........................ Passed 17.48 sec | |
| Start 92: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate | |
| 75/115 Test #14: coreneuron_modtests::fast_imem_py .................................. Passed 2.45 sec | |
| Start 15: coreneuron_modtests::datareturn_py | |
| 76/115 Test #13: coreneuron_modtests::spikes_file_mode_py ........................... Passed 35.34 sec | |
| Start 16: coreneuron_modtests::test_units_py | |
| 77/115 Test #91: testcorenrn_watch::coreneuron_gpu_online ........................... Passed 35.13 sec | |
| Start 93: testcorenrn_watch::coreneuron_gpu_offline | |
| 78/115 Test #15: coreneuron_modtests::datareturn_py ................................. Passed 29.45 sec | |
| Start 17: coreneuron_modtests::test_netmove_py | |
| 79/115 Test #92: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate .......... Passed 32.95 sec | |
| Start 95: testcorenrn_watch::coreneuron_cpu_online | |
| 80/115 Test #16: coreneuron_modtests::test_units_py ................................. Passed 31.00 sec | |
| Start 18: coreneuron_modtests::test_watchrange_py | |
| 81/115 Test #93: testcorenrn_watch::coreneuron_gpu_offline .......................... Passed 31.27 sec | |
| Start 96: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate | |
| 82/115 Test #95: testcorenrn_watch::coreneuron_cpu_online ........................... Passed 31.05 sec | |
| Start 97: testcorenrn_watch::coreneuron_cpu_offline | |
| 83/115 Test #17: coreneuron_modtests::test_netmove_py ............................... Passed 34.31 sec | |
| Start 19: coreneuron_modtests::test_psolve_py | |
| 84/115 Test #18: coreneuron_modtests::test_watchrange_py ............................ Passed 35.04 sec | |
| Start 20: coreneuron_modtests::test_natrans_py | |
| 85/115 Test #97: testcorenrn_watch::coreneuron_cpu_offline .......................... Passed 29.29 sec | |
| Start 100: testcorenrn_netstimdirect::direct_netstimdirect | |
| 86/115 Test #96: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate .......... Passed 37.10 sec | |
| Start 101: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate | |
| 87/115 Test #19: coreneuron_modtests::test_psolve_py ................................ Passed 31.72 sec | |
| Start 33: external_ringtest::compare_results | |
| 88/115 Test #33: external_ringtest::compare_results ................................. Passed 0.09 sec | |
| Start 43: testcorenrn_bbcore::compare_results | |
| 89/115 Test #43: testcorenrn_bbcore::compare_results ................................ Passed 0.09 sec | |
| Start 53: testcorenrn_deriv::compare_results | |
| 90/115 Test #53: testcorenrn_deriv::compare_results ................................. Passed 0.08 sec | |
| Start 63: testcorenrn_gf::compare_results | |
| 91/115 Test #63: testcorenrn_gf::compare_results .................................... Passed 0.07 sec | |
| Start 69: testcorenrn_patstim::compare_results | |
| 92/115 Test #69: testcorenrn_patstim::compare_results ............................... Passed 0.07 sec | |
| Start 79: testcorenrn_vecplay::compare_results | |
| 93/115 Test #79: testcorenrn_vecplay::compare_results ............................... Passed 0.07 sec | |
| Start 99: testcorenrn_watch::compare_results | |
| 94/115 Test #99: testcorenrn_watch::compare_results ................................. Passed 0.07 sec | |
| Start 103: external_nrntest | |
| 95/115 Test #20: coreneuron_modtests::test_natrans_py ............................... Passed 29.94 sec | |
| Start 109: channel_benchmark_hippo::compare_results | |
| 96/115 Test #109: channel_benchmark_hippo::compare_results ........................... Passed 0.18 sec | |
| Start 115: channel_benchmark_sscx::compare_results | |
| 97/115 Test #115: channel_benchmark_sscx::compare_results ............................ Passed 0.20 sec | |
| 98/115 Test #101: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ... Passed 29.01 sec | |
| Start 21: coreneuron_modtests::spikes_mpi_py | |
| 99/115 Test #100: testcorenrn_netstimdirect::direct_netstimdirect .................... Passed 29.94 sec | |
| Start 22: coreneuron_modtests::spikes_mpi_file_mode_py | |
| Start 102: testcorenrn_netstimdirect::compare_results | |
| 100/115 Test #102: testcorenrn_netstimdirect::compare_results ......................... Passed 0.09 sec | |
| 101/115 Test #103: external_nrntest ................................................... Passed 31.29 sec | |
| 102/115 Test #5: rxdmod_tests::rxd_tests ............................................ Passed 233.99 sec | |
| 103/115 Test #22: coreneuron_modtests::spikes_mpi_file_mode_py ....................... Passed 20.15 sec | |
| Start 84: testcorenrn_vecevent::coreneuron_gpu_offline::preparation | |
| 104/115 Test #21: coreneuron_modtests::spikes_mpi_py ................................. Passed 21.59 sec | |
| 105/115 Test #84: testcorenrn_vecevent::coreneuron_gpu_offline::preparation .......... Passed 9.25 sec | |
| Start 88: testcorenrn_vecevent::coreneuron_cpu_offline::preparation | |
| 106/115 Test #88: testcorenrn_vecevent::coreneuron_cpu_offline::preparation .......... Passed 37.31 sec | |
| Start 80: testcorenrn_vecevent::neuron | |
| 107/115 Test #80: testcorenrn_vecevent::neuron ....................................... Passed 2.54 sec | |
| Start 81: testcorenrn_vecevent::coreneuron_gpu_online | |
| 108/115 Test #81: testcorenrn_vecevent::coreneuron_gpu_online ........................ Passed 9.55 sec | |
| Start 82: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate | |
| 109/115 Test #6: rxdmod_tests::rxd_mpi_tests ........................................ Passed 305.81 sec | |
| Start 83: testcorenrn_vecevent::coreneuron_gpu_offline | |
| 110/115 Test #83: testcorenrn_vecevent::coreneuron_gpu_offline ....................... Passed 15.34 sec | |
| Start 85: testcorenrn_vecevent::coreneuron_cpu_online | |
| 111/115 Test #82: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate ....... Passed 26.18 sec | |
| Start 86: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate | |
| 112/115 Test #85: testcorenrn_vecevent::coreneuron_cpu_online ........................ Passed 10.62 sec | |
| Start 87: testcorenrn_vecevent::coreneuron_cpu_offline | |
| 113/115 Test #86: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ....... Passed 12.70 sec | |
| 114/115 Test #87: testcorenrn_vecevent::coreneuron_cpu_offline ....................... Passed 3.52 sec | |
| Start 89: testcorenrn_vecevent::compare_results | |
| 115/115 Test #89: testcorenrn_vecevent::compare_results .............................. Passed 0.20 sec | |
| 100% tests passed, 0 tests failed out of 115 | |
| Total Test time (real) = 544.80 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.8.3 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1634171586:step_script [0Ksection_start:1634171586:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=186541 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=72848 responseStatus[0;m=201 Created token[0;m=iu5pRvVR | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=186608 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=72848 responseStatus[0;m=201 Created token[0;m=iu5pRvVR | |
| section_end:1634171588:upload_artifacts_on_success [0Ksection_start:1634171588:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1634171588:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1634170867:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1634170867:resolve_secrets [0Ksection_start:1634170867:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor083464397, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 19887, build ref 2ffcc0bd233954f136c937baf23e9593a0be0e8a, job ID 72846 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P19887 | |
| A slurm job will be created with name GL_J72846_PROD_P112_CP0_C0 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job eligible for phase1 and phase2, setting partition=prod_p2,prod_p1 | |
| Submitted batch job 2782703 | |
| job state: R | |
| section_end:1634171021:prepare_executor [0Ksection_start:1634171021:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r4i1n18 via bbpv1.epfl.ch... | |
| section_end:1634171022:prepare_script [0Ksection_start:1634171022:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1634171023:get_sources [0Ksection_start:1634171023:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:neuron+nmodl:intel (72842)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=25002 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=72842 responseStatus[0;m=200 OK token[0;m=mQKikS1x | |
| section_end:1634171024:download_artifacts [0Ksection_start:1634171024:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r4i1n18 | |
| Build name: Linux-icpc | |
| Create new tag: 20211014-0024 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P19887/72842/spack-build/spack-stage-neuron-develop-x5fc6bslh4t3tjgxm7245xtkkgztnyge/spack-build-x5fc6bs | |
| Start 28: external_ringtest::coreneuron_cpu_mpi_offline::preparation | |
| Start 35: testcorenrn_bbcore::coreneuron_cpu_offline::preparation | |
| Start 41: testcorenrn_deriv::coreneuron_cpu_offline::preparation | |
| Start 47: testcorenrn_gf::coreneuron_cpu_offline::preparation | |
| Start 51: testcorenrn_patstim::coreneuron_cpu_offline::preparation | |
| 1/94 Test #35: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............ Passed 1.90 sec | |
| Start 75: testcorenrn_conc::coreneuron_cpu_offline::preparation | |
| 2/94 Test #41: testcorenrn_deriv::coreneuron_cpu_offline::preparation ............. Passed 1.92 sec | |
| Start 81: testcorenrn_kin::coreneuron_cpu_offline::preparation | |
| 3/94 Test #47: testcorenrn_gf::coreneuron_cpu_offline::preparation ................ Passed 2.27 sec | |
| Start 57: testcorenrn_vecplay::coreneuron_cpu_offline::preparation | |
| 4/94 Test #51: testcorenrn_patstim::coreneuron_cpu_offline::preparation ........... Passed 2.27 sec | |
| Start 69: testcorenrn_watch::coreneuron_cpu_offline::preparation | |
| 5/94 Test #28: external_ringtest::coreneuron_cpu_mpi_offline::preparation ......... Passed 2.73 sec | |
| Start 24: external_ringtest::neuron | |
| Start 31: testcorenrn_bbcore::neuron | |
| 6/94 Test #75: testcorenrn_conc::coreneuron_cpu_offline::preparation .............. Passed 1.46 sec | |
| Start 32: testcorenrn_bbcore::coreneuron_cpu_online | |
| 7/94 Test #81: testcorenrn_kin::coreneuron_cpu_offline::preparation ............... Passed 1.51 sec | |
| Start 33: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate | |
| 8/94 Test #57: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ........... Passed 1.69 sec | |
| Start 25: external_ringtest::neuron_mpi | |
| 9/94 Test #69: testcorenrn_watch::coreneuron_cpu_offline::preparation ............. Passed 1.75 sec | |
| Start 26: external_ringtest::coreneuron_cpu_mpi | |
| 10/94 Test #31: testcorenrn_bbcore::neuron ......................................... Passed 1.44 sec | |
| Start 34: testcorenrn_bbcore::coreneuron_cpu_offline | |
| 11/94 Test #24: external_ringtest::neuron .......................................... Passed 1.78 sec | |
| Start 37: testcorenrn_deriv::neuron | |
| 12/94 Test #32: testcorenrn_bbcore::coreneuron_cpu_online .......................... Passed 1.90 sec | |
| Start 38: testcorenrn_deriv::coreneuron_cpu_online | |
| 13/94 Test #34: testcorenrn_bbcore::coreneuron_cpu_offline ......................... Passed 1.41 sec | |
| Start 39: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate | |
| 14/94 Test #33: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ......... Passed 2.54 sec | |
| Start 40: testcorenrn_deriv::coreneuron_cpu_offline | |
| 15/94 Test #37: testcorenrn_deriv::neuron .......................................... Passed 1.69 sec | |
| Start 71: testcorenrn_conc::neuron | |
| 16/94 Test #40: testcorenrn_deriv::coreneuron_cpu_offline .......................... Passed 1.61 sec | |
| Start 72: testcorenrn_conc::coreneuron_cpu_online | |
| 17/94 Test #71: testcorenrn_conc::neuron ........................................... Passed 1.96 sec | |
| Start 73: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate | |
| 18/94 Test #38: testcorenrn_deriv::coreneuron_cpu_online ........................... Passed 3.29 sec | |
| Start 74: testcorenrn_conc::coreneuron_cpu_offline | |
| 19/94 Test #39: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate .......... Passed 3.34 sec | |
| Start 77: testcorenrn_kin::neuron | |
| 20/94 Test #25: external_ringtest::neuron_mpi ...................................... Passed 6.05 sec | |
| Start 27: external_ringtest::coreneuron_cpu_mpi_offline | |
| 21/94 Test #74: testcorenrn_conc::coreneuron_cpu_offline ........................... Passed 1.67 sec | |
| Start 78: testcorenrn_kin::coreneuron_cpu_online | |
| 22/94 Test #72: testcorenrn_conc::coreneuron_cpu_online ............................ Passed 2.84 sec | |
| Start 79: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate | |
| 23/94 Test #77: testcorenrn_kin::neuron ............................................ Passed 2.04 sec | |
| Start 80: testcorenrn_kin::coreneuron_cpu_offline | |
| 24/94 Test #73: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ........... Passed 2.87 sec | |
| Start 87: channel_benchmark_hippo::neuron | |
| 25/94 Test #26: external_ringtest::coreneuron_cpu_mpi .............................. Passed 7.14 sec | |
| Start 29: external_ringtest::coreneuron_cpu_mpi_threads | |
| 26/94 Test #27: external_ringtest::coreneuron_cpu_mpi_offline ...................... Passed 2.80 sec | |
| Start 43: testcorenrn_gf::neuron | |
| 27/94 Test #80: testcorenrn_kin::coreneuron_cpu_offline ............................ Passed 2.37 sec | |
| Start 88: channel_benchmark_hippo::coreneuron_cpu_online | |
| 28/94 Test #78: testcorenrn_kin::coreneuron_cpu_online ............................. Passed 3.84 sec | |
| Start 89: channel_benchmark_hippo::coreneuron_cpu_filemode | |
| 29/94 Test #79: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ............ Passed 4.60 sec | |
| Start 91: channel_benchmark_sscx::neuron | |
| 30/94 Test #43: testcorenrn_gf::neuron ............................................. Passed 6.55 sec | |
| Start 44: testcorenrn_gf::coreneuron_cpu_online | |
| 31/94 Test #29: external_ringtest::coreneuron_cpu_mpi_threads ...................... Passed 10.74 sec | |
| Start 45: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate | |
| 32/94 Test #44: testcorenrn_gf::coreneuron_cpu_online .............................. Passed 9.93 sec | |
| Start 46: testcorenrn_gf::coreneuron_cpu_offline | |
| 33/94 Test #46: testcorenrn_gf::coreneuron_cpu_offline ............................. Passed 5.78 sec | |
| Start 49: testcorenrn_patstim::neuron | |
| 34/94 Test #45: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ............. Passed 15.10 sec | |
| Start 50: testcorenrn_patstim::coreneuron_cpu_offline | |
| 35/94 Test #49: testcorenrn_patstim::neuron ........................................ Passed 3.12 sec | |
| Start 53: testcorenrn_vecplay::neuron | |
| 36/94 Test #50: testcorenrn_patstim::coreneuron_cpu_offline ........................ Passed 2.17 sec | |
| Start 54: testcorenrn_vecplay::coreneuron_cpu_online | |
| 37/94 Test #53: testcorenrn_vecplay::neuron ........................................ Passed 3.25 sec | |
| Start 55: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate | |
| 38/94 Test #54: testcorenrn_vecplay::coreneuron_cpu_online ......................... Passed 5.96 sec | |
| Start 56: testcorenrn_vecplay::coreneuron_cpu_offline | |
| 39/94 Test #56: testcorenrn_vecplay::coreneuron_cpu_offline ........................ Passed 2.98 sec | |
| Start 65: testcorenrn_watch::neuron | |
| 40/94 Test #55: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........ Passed 9.72 sec | |
| Start 66: testcorenrn_watch::coreneuron_cpu_online | |
| 41/94 Test #65: testcorenrn_watch::neuron .......................................... Passed 3.50 sec | |
| Start 67: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate | |
| 42/94 Test #66: testcorenrn_watch::coreneuron_cpu_online ........................... Passed 6.25 sec | |
| Start 68: testcorenrn_watch::coreneuron_cpu_offline | |
| 43/94 Test #67: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate .......... Passed 8.39 sec | |
| Start 83: testcorenrn_netstimdirect::direct_netstimdirect | |
| 44/94 Test #68: testcorenrn_watch::coreneuron_cpu_offline .......................... Passed 2.68 sec | |
| Start 84: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate | |
| 45/94 Test #84: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ... Passed 9.23 sec | |
| Start 92: channel_benchmark_sscx::coreneuron_cpu_online | |
| Start 93: channel_benchmark_sscx::coreneuron_cpu_filemode | |
| 46/94 Test #83: testcorenrn_netstimdirect::direct_netstimdirect .................... Passed 13.37 sec | |
| Start 1: testneuron | |
| Start 2: ringtest | |
| 47/94 Test #1: testneuron ......................................................... Passed 0.07 sec | |
| Start 3: connect_dend | |
| 48/94 Test #3: connect_dend ....................................................... Passed 0.16 sec | |
| Start 4: pynrn_tests::basic_tests | |
| 49/94 Test #2: ringtest ........................................................... Passed 0.28 sec | |
| Start 5: rxdmod_tests::rxd_tests | |
| 50/94 Test #4: pynrn_tests::basic_tests ........................................... Passed 5.17 sec | |
| Start 6: rxdmod_tests::rxd_mpi_tests | |
| 51/94 Test #5: rxdmod_tests::rxd_tests ............................................ Passed 59.51 sec | |
| Start 7: parallel_tests | |
| 52/94 Test #91: channel_benchmark_sscx::neuron ..................................... Passed 128.36 sec | |
| Start 8: parallel_partrans | |
| 53/94 Test #87: channel_benchmark_hippo::neuron .................................... Passed 134.65 sec | |
| Start 9: parallel_bas | |
| 54/94 Test #88: channel_benchmark_hippo::coreneuron_cpu_online ..................... Passed 135.03 sec | |
| Start 10: coreneuron_modtests::direct_py | |
| 55/94 Test #7: parallel_tests ..................................................... Passed 17.04 sec | |
| Start 11: coreneuron_modtests::direct_hoc | |
| 56/94 Test #8: parallel_partrans .................................................. Passed 7.46 sec | |
| Start 12: coreneuron_modtests::spikes_py | |
| 57/94 Test #89: channel_benchmark_hippo::coreneuron_cpu_filemode ................... Passed 137.20 sec | |
| Start 13: coreneuron_modtests::spikes_file_mode_py | |
| 58/94 Test #11: coreneuron_modtests::direct_hoc .................................... Passed 3.89 sec | |
| Start 14: coreneuron_modtests::fornetcon_py | |
| 59/94 Test #9: parallel_bas ....................................................... Passed 19.34 sec | |
| Start 15: coreneuron_modtests::fast_imem_py | |
| 60/94 Test #10: coreneuron_modtests::direct_py ..................................... Passed 23.22 sec | |
| Start 16: coreneuron_modtests::datareturn_py | |
| 61/94 Test #12: coreneuron_modtests::spikes_py ..................................... Passed 27.24 sec | |
| Start 17: coreneuron_modtests::test_units_py | |
| 62/94 Test #14: coreneuron_modtests::fornetcon_py .................................. Passed 29.19 sec | |
| Start 18: coreneuron_modtests::test_netmove_py | |
| 63/94 Test #13: coreneuron_modtests::spikes_file_mode_py ........................... Passed 33.16 sec | |
| Start 19: coreneuron_modtests::test_watchrange_py | |
| 64/94 Test #92: channel_benchmark_sscx::coreneuron_cpu_online ...................... Passed 116.37 sec | |
| Start 20: coreneuron_modtests::test_psolve_py | |
| 65/94 Test #93: channel_benchmark_sscx::coreneuron_cpu_filemode .................... Passed 116.97 sec | |
| Start 21: coreneuron_modtests::test_natrans_py | |
| 66/94 Test #15: coreneuron_modtests::fast_imem_py .................................. Passed 23.51 sec | |
| Start 30: external_ringtest::compare_results | |
| 67/94 Test #30: external_ringtest::compare_results ................................. Passed 0.07 sec | |
| Start 36: testcorenrn_bbcore::compare_results | |
| 68/94 Test #36: testcorenrn_bbcore::compare_results ................................ Passed 0.07 sec | |
| Start 42: testcorenrn_deriv::compare_results | |
| 69/94 Test #42: testcorenrn_deriv::compare_results ................................. Passed 0.06 sec | |
| Start 48: testcorenrn_gf::compare_results | |
| 70/94 Test #48: testcorenrn_gf::compare_results .................................... Passed 0.07 sec | |
| Start 52: testcorenrn_patstim::compare_results | |
| 71/94 Test #52: testcorenrn_patstim::compare_results ............................... Passed 0.06 sec | |
| Start 58: testcorenrn_vecplay::compare_results | |
| 72/94 Test #58: testcorenrn_vecplay::compare_results ............................... Passed 0.10 sec | |
| Start 70: testcorenrn_watch::compare_results | |
| 73/94 Test #70: testcorenrn_watch::compare_results ................................. Passed 0.06 sec | |
| Start 76: testcorenrn_conc::compare_results | |
| 74/94 Test #76: testcorenrn_conc::compare_results .................................. Passed 0.07 sec | |
| Start 82: testcorenrn_kin::compare_results | |
| 75/94 Test #82: testcorenrn_kin::compare_results ................................... Passed 0.08 sec | |
| Start 85: testcorenrn_netstimdirect::compare_results | |
| 76/94 Test #85: testcorenrn_netstimdirect::compare_results ......................... Passed 0.06 sec | |
| Start 86: external_nrntest | |
| 77/94 Test #16: coreneuron_modtests::datareturn_py ................................. Passed 20.30 sec | |
| Start 90: channel_benchmark_hippo::compare_results | |
| 78/94 Test #90: channel_benchmark_hippo::compare_results ........................... Passed 0.24 sec | |
| Start 94: channel_benchmark_sscx::compare_results | |
| 79/94 Test #94: channel_benchmark_sscx::compare_results ............................ Passed 0.28 sec | |
| 80/94 Test #17: coreneuron_modtests::test_units_py ................................. Passed 15.10 sec | |
| Start 22: coreneuron_modtests::spikes_mpi_py | |
| 81/94 Test #19: coreneuron_modtests::test_watchrange_py ............................ Passed 10.03 sec | |
| 82/94 Test #21: coreneuron_modtests::test_natrans_py ............................... Passed 9.43 sec | |
| Start 23: coreneuron_modtests::spikes_mpi_file_mode_py | |
| 83/94 Test #20: coreneuron_modtests::test_psolve_py ................................ Passed 10.33 sec | |
| 84/94 Test #18: coreneuron_modtests::test_netmove_py ............................... Passed 13.04 sec | |
| 85/94 Test #22: coreneuron_modtests::spikes_mpi_py ................................. Passed 4.57 sec | |
| Start 63: testcorenrn_vecevent::coreneuron_cpu_offline::preparation | |
| 86/94 Test #23: coreneuron_modtests::spikes_mpi_file_mode_py ....................... Passed 2.59 sec | |
| 87/94 Test #63: testcorenrn_vecevent::coreneuron_cpu_offline::preparation .......... Passed 2.42 sec | |
| Start 59: testcorenrn_vecevent::neuron | |
| 88/94 Test #59: testcorenrn_vecevent::neuron ....................................... Passed 2.16 sec | |
| Start 60: testcorenrn_vecevent::coreneuron_cpu_online | |
| 89/94 Test #60: testcorenrn_vecevent::coreneuron_cpu_online ........................ Passed 7.64 sec | |
| Start 61: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate | |
| 90/94 Test #61: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ....... Passed 30.29 sec | |
| Start 62: testcorenrn_vecevent::coreneuron_cpu_offline | |
| 91/94 Test #62: testcorenrn_vecevent::coreneuron_cpu_offline ....................... Passed 1.69 sec | |
| Start 64: testcorenrn_vecevent::compare_results | |
| 92/94 Test #64: testcorenrn_vecevent::compare_results .............................. Passed 0.06 sec | |
| 93/94 Test #86: external_nrntest ................................................... Passed 56.36 sec | |
| 94/94 Test #6: rxdmod_tests::rxd_mpi_tests ........................................ Passed 177.26 sec | |
| 100% tests passed, 0 tests failed out of 94 | |
| Total Test time (real) = 256.14 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.8.3 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1634171296:step_script [0Ksection_start:1634171296:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=31846 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=72846 responseStatus[0;m=201 Created token[0;m=UkBRYrYS | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=31878 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=72846 responseStatus[0;m=201 Created token[0;m=UkBRYrYS | |
| section_end:1634171297:upload_artifacts_on_success [0Ksection_start:1634171297:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1634171298:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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